mRNA_P-canaliculata_contig98984.24014.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig98984.24014.1
Unique NamemRNA_P-canaliculata_contig98984.24014.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig98984.24014.1 vs. uniprot
Match: A0A5B2TW97_9FLAO (Phage tail tape measure protein n=1 Tax=Maribacter flavus TaxID=1658664 RepID=A0A5B2TW97_9FLAO)

HSP 1 Score: 82.4 bits (202), Expect = 4.860e-17
Identity = 42/53 (79.25%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 MAKRIVDEEMRFTIVVNGDKAQKELYDLEKSTRELTGRNKELRAEQAKLIASG 159
            MAKRIVDEEMRF+I+VNGD+AQKELYDLEKSTR+LT RNKELR E+ +L A G
Sbjct:    1 MAKRIVDEEMRFSIIVNGDRAQKELYDLEKSTRDLTQRNKELRQEKVRLFAQG 53
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BLAST of mRNA_P-canaliculata_contig98984.24014.1 vs. uniprot
Match: UPI001AAFD4D9 (phage tail tape measure protein n=1 Tax=Salegentibacter sp. BDJ18 TaxID=2816376 RepID=UPI001AAFD4D9)

HSP 1 Score: 76.6 bits (187), Expect = 5.230e-15
Identity = 39/53 (73.58%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 MAKRIVDEEMRFTIVVNGDKAQKELYDLEKSTRELTGRNKELRAEQAKLIASG 159
            MAKRIVDEEMRF++V+NG++AQKEL+DLEKSTR+LT RNKELR E+ KL  +G
Sbjct:    1 MAKRIVDEEMRFSVVINGNEAQKELFDLEKSTRDLTKRNKELREEKRKLSRAG 53
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BLAST of mRNA_P-canaliculata_contig98984.24014.1 vs. uniprot
Match: A0A385BJ74_9FLAO (Phage-related minor tail protein n=1 Tax=Mariniflexile sp. TRM1-10 TaxID=2027857 RepID=A0A385BJ74_9FLAO)

HSP 1 Score: 65.9 bits (159), Expect = 3.280e-11
Identity = 32/48 (66.67%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:    1 MAKRIVDEEMRFTIVVNGDKAQKELYDLEKSTRELTGRNKELRAEQAK 144
            M K+I+DEEMRF+I+VNG++AQKEL++LE +TR+LT  NKEL+AEQA+
Sbjct:    1 MGKKILDEEMRFSIIVNGNQAQKELFELENATRKLTATNKELKAEQAR 48
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BLAST of mRNA_P-canaliculata_contig98984.24014.1 vs. uniprot
Match: A0A2E6VDZ6_9FLAO (Phage tail tape measure protein n=1 Tax=Winogradskyella sp. TaxID=1883156 RepID=A0A2E6VDZ6_9FLAO)

HSP 1 Score: 65.5 bits (158), Expect = 4.480e-11
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    1 MAKRIVDEEMRFTIVVNGDKAQKELYDLEKSTRELTGRNKELR 129
            MAKRIVDEEMRFT++VNG+ AQKELYDLEK  R LT  NK+LR
Sbjct:    1 MAKRIVDEEMRFTVIVNGNSAQKELYDLEKRNRALTASNKDLR 43
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BLAST of mRNA_P-canaliculata_contig98984.24014.1 vs. uniprot
Match: UPI00047E2194 (phage tail tape measure protein n=2 Tax=Maribacter sp. Hel_I_7 TaxID=1249997 RepID=UPI00047E2194)

HSP 1 Score: 64.7 bits (156), Expect = 8.370e-11
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 1 
Query:    1 MAKRIVDEEMRFTIVVNGDKAQKELYDLEKSTR 99
            MAKRIVDEEMRFTIVVNGDKAQKELYDLEKSTR
Sbjct:    1 MAKRIVDEEMRFTIVVNGDKAQKELYDLEKSTR 33
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BLAST of mRNA_P-canaliculata_contig98984.24014.1 vs. uniprot
Match: A0A4Q0PNC7_9FLAO (Tubulin-specific chaperone A n=1 Tax=Leeuwenhoekiella marinoflava TaxID=988 RepID=A0A4Q0PNC7_9FLAO)

HSP 1 Score: 62.4 bits (150), Expect = 5.460e-10
Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    1 MAKRIVDEEMRFTIVVNGDKAQKELYDLEKSTRELTGRNKELRAEQAKLIASG 159
            MAKRIVDEEMRF+I++NG++AQKEL DLEK+ R+L   N++ R EQ KL   G
Sbjct:    1 MAKRIVDEEMRFSIIINGNEAQKELLDLEKANRKLLTANQKNRTEQRKLERQG 53
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BLAST of mRNA_P-canaliculata_contig98984.24014.1 vs. uniprot
Match: UPI0007FE11C6 (phage tail tape measure protein n=1 Tax=Tamlana sp. s12 TaxID=1630406 RepID=UPI0007FE11C6)

HSP 1 Score: 62.0 bits (149), Expect = 7.470e-10
Identity = 32/49 (65.31%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    1 MAKRIVDEEMRFTIVVNGDKAQKELYDLEKSTRELTGRNKELRAEQAKL 147
            M+K I+DE M+ +IVVNG++AQKEL++LEKSTR LT +NK+ R EQAKL
Sbjct:    1 MSKTILDEVMKLSIVVNGNEAQKELFELEKSTRNLTAQNKQYREEQAKL 49
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BLAST of mRNA_P-canaliculata_contig98984.24014.1 vs. uniprot
Match: UPI00047B9900 (phage tail tape measure protein n=1 Tax=Sediminibacter sp. Hel_I_10 TaxID=1392490 RepID=UPI00047B9900)

HSP 1 Score: 58.9 bits (141), Expect = 9.120e-9
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 MAKRIVDEEMRFTIVVNGDKAQKELYDLEKSTRELTGRN 117
            MAKR+VDEEMRFT+V+NGD  +KELYDLEK  R LT  N
Sbjct:    1 MAKRVVDEEMRFTVVINGDAGKKELYDLEKRNRSLTASN 39
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BLAST of mRNA_P-canaliculata_contig98984.24014.1 vs. uniprot
Match: A0A1I7GLC2_9FLAO (Phage tail tape measure protein, TP901 family, core region n=1 Tax=Pustulibacterium marinum TaxID=1224947 RepID=A0A1I7GLC2_9FLAO)

HSP 1 Score: 55.8 bits (133), Expect = 1.120e-7
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 MAKRIVDEEMRFTIVVNGDKAQKELYDLEKSTRELTGRNKELRAEQAKLIASG 159
            MAK I DEE++ +I++NGD AQK+L+DL+KSTR L   NK+LR E+  L   G
Sbjct:    1 MAKTITDEEIKLSIIINGDPAQKQLHDLDKSTRTLISDNKKLRDERRALEREG 53
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BLAST of mRNA_P-canaliculata_contig98984.24014.1 vs. uniprot
Match: UPI001C5AF476 (phage tail tape measure protein n=1 Tax=Flavobacterium sp. NKUCC04_CG TaxID=2842121 RepID=UPI001C5AF476)

HSP 1 Score: 54.3 bits (129), Expect = 3.910e-7
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 MAKRIVDEEMRFTIVVNGDKAQKELYDLEKSTRELTGRNKELRAEQAKLIASG 159
            MAKRIVDEE++ +I+++G+ AQKEL +LEKSTR L   NKEL  ++  L   G
Sbjct:    1 MAKRIVDEELKLSIIIDGNAAQKELLNLEKSTRSLNTENKELLTQKRLLEKQG 53
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98984.24014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A5B2TW97_9FLAO4.860e-1779.25Phage tail tape measure protein n=1 Tax=Maribacter... [more]
UPI001AAFD4D95.230e-1573.58phage tail tape measure protein n=1 Tax=Salegentib... [more]
A0A385BJ74_9FLAO3.280e-1166.67Phage-related minor tail protein n=1 Tax=Marinifle... [more]
A0A2E6VDZ6_9FLAO4.480e-1176.74Phage tail tape measure protein n=1 Tax=Winogradsk... [more]
UPI00047E21948.370e-11100.00phage tail tape measure protein n=2 Tax=Maribacter... [more]
A0A4Q0PNC7_9FLAO5.460e-1062.26Tubulin-specific chaperone A n=1 Tax=Leeuwenhoekie... [more]
UPI0007FE11C67.470e-1065.31phage tail tape measure protein n=1 Tax=Tamlana sp... [more]
UPI00047B99009.120e-971.79phage tail tape measure protein n=1 Tax=Sediminiba... [more]
A0A1I7GLC2_9FLAO1.120e-754.72Phage tail tape measure protein, TP901 family, cor... [more]
UPI001C5AF4763.910e-754.72phage tail tape measure protein n=1 Tax=Flavobacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98984contigP-canaliculata_contig98984:3..164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score65.5
Seed ortholog evalue8.9e-09
Seed eggNOG ortholog1249997.JHZW01000002_gene40
EggNOG free text desc.Phage-related minor tail protein
EggNOG OGs1I01C@117743,4NG54@976,COG1196@1,COG1196@2,COG5283@1,COG5283@2
COG Functional cat.L
Best tax levelFlavobacteriia
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817351.1555214-CDS-P-canaliculata_contig98984:2..1641622817351.1555214-CDS-P-canaliculata_contig98984:2..164Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98984 3..164 -
1693495240.6804774-CDS-P-canaliculata_contig98984:2..1641693495240.6804774-CDS-P-canaliculata_contig98984:2..164Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98984 3..164 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98984.24014.1prot_P-canaliculata_contig98984.24014.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig98984 3..164 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig98984.24014.1

>prot_P-canaliculata_contig98984.24014.1 ID=prot_P-canaliculata_contig98984.24014.1|Name=mRNA_P-canaliculata_contig98984.24014.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=54bp
MAKRIVDEEMRFTIVVNGDKAQKELYDLEKSTRELTGRNKELRAEQAKLI
ASGQ
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mRNA from alignment at P-canaliculata_contig98984:3..164-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig98984.24014.1 ID=mRNA_P-canaliculata_contig98984.24014.1|Name=mRNA_P-canaliculata_contig98984.24014.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at P-canaliculata_contig98984:3..164- (Pelvetia canaliculata dioecious)
ATGGCCAAACGTATTGTAGACGAAGAAATGAGGTTCACCATTGTGGTCAA
TGGTGATAAAGCACAAAAGGAACTGTACGACCTTGAGAAATCTACTCGCG
AGCTTACTGGTCGAAATAAAGAACTACGTGCAGAACAGGCAAAGCTCATT
GCCTCTGGGCAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig98984:3..164-

>mRNA_P-canaliculata_contig98984.24014.1 ID=mRNA_P-canaliculata_contig98984.24014.1|Name=mRNA_P-canaliculata_contig98984.24014.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at P-canaliculata_contig98984:3..164- (Pelvetia canaliculata dioecious)
ATGGCCAAACGTATTGTAGACGAAGAAATGAGGTTCACCATTGTGGTCAA
TGGTGATAAAGCACAAAAGGAACTGTACGACCTTGAGAAATCTACTCGCG
AGCTTACTGGTCGAAATAAAGAACTACGTGCAGAACAGGCAAAGCTCATT
GCCTCTGGGCAAATGGCCAAACGTATTGTAGACGAAGAAATGAGGTTCAC
CATTGTGGTCAATGGTGATAAAGCACAAAAGGAACTGTACGACCTTGAGA
AATCTACTCGCGAGCTTACTGGTCGAAATAAAGAACTACGTGCAGAACAG
GCAAAGCTCATTGCCTCTGGGCAA
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