mRNA_P-canaliculata_contig98984.24014.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig98984.24014.1 vs. uniprot
Match: A0A5B2TW97_9FLAO (Phage tail tape measure protein n=1 Tax=Maribacter flavus TaxID=1658664 RepID=A0A5B2TW97_9FLAO) HSP 1 Score: 82.4 bits (202), Expect = 4.860e-17 Identity = 42/53 (79.25%), Postives = 48/53 (90.57%), Query Frame = 1 Query: 1 MAKRIVDEEMRFTIVVNGDKAQKELYDLEKSTRELTGRNKELRAEQAKLIASG 159 MAKRIVDEEMRF+I+VNGD+AQKELYDLEKSTR+LT RNKELR E+ +L A G Sbjct: 1 MAKRIVDEEMRFSIIVNGDRAQKELYDLEKSTRDLTQRNKELRQEKVRLFAQG 53
BLAST of mRNA_P-canaliculata_contig98984.24014.1 vs. uniprot
Match: UPI001AAFD4D9 (phage tail tape measure protein n=1 Tax=Salegentibacter sp. BDJ18 TaxID=2816376 RepID=UPI001AAFD4D9) HSP 1 Score: 76.6 bits (187), Expect = 5.230e-15 Identity = 39/53 (73.58%), Postives = 48/53 (90.57%), Query Frame = 1 Query: 1 MAKRIVDEEMRFTIVVNGDKAQKELYDLEKSTRELTGRNKELRAEQAKLIASG 159 MAKRIVDEEMRF++V+NG++AQKEL+DLEKSTR+LT RNKELR E+ KL +G Sbjct: 1 MAKRIVDEEMRFSVVINGNEAQKELFDLEKSTRDLTKRNKELREEKRKLSRAG 53
BLAST of mRNA_P-canaliculata_contig98984.24014.1 vs. uniprot
Match: A0A385BJ74_9FLAO (Phage-related minor tail protein n=1 Tax=Mariniflexile sp. TRM1-10 TaxID=2027857 RepID=A0A385BJ74_9FLAO) HSP 1 Score: 65.9 bits (159), Expect = 3.280e-11 Identity = 32/48 (66.67%), Postives = 44/48 (91.67%), Query Frame = 1 Query: 1 MAKRIVDEEMRFTIVVNGDKAQKELYDLEKSTRELTGRNKELRAEQAK 144 M K+I+DEEMRF+I+VNG++AQKEL++LE +TR+LT NKEL+AEQA+ Sbjct: 1 MGKKILDEEMRFSIIVNGNQAQKELFELENATRKLTATNKELKAEQAR 48
BLAST of mRNA_P-canaliculata_contig98984.24014.1 vs. uniprot
Match: A0A2E6VDZ6_9FLAO (Phage tail tape measure protein n=1 Tax=Winogradskyella sp. TaxID=1883156 RepID=A0A2E6VDZ6_9FLAO) HSP 1 Score: 65.5 bits (158), Expect = 4.480e-11 Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 1 Query: 1 MAKRIVDEEMRFTIVVNGDKAQKELYDLEKSTRELTGRNKELR 129 MAKRIVDEEMRFT++VNG+ AQKELYDLEK R LT NK+LR Sbjct: 1 MAKRIVDEEMRFTVIVNGNSAQKELYDLEKRNRALTASNKDLR 43
BLAST of mRNA_P-canaliculata_contig98984.24014.1 vs. uniprot
Match: UPI00047E2194 (phage tail tape measure protein n=2 Tax=Maribacter sp. Hel_I_7 TaxID=1249997 RepID=UPI00047E2194) HSP 1 Score: 64.7 bits (156), Expect = 8.370e-11 Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 1 Query: 1 MAKRIVDEEMRFTIVVNGDKAQKELYDLEKSTR 99 MAKRIVDEEMRFTIVVNGDKAQKELYDLEKSTR Sbjct: 1 MAKRIVDEEMRFTIVVNGDKAQKELYDLEKSTR 33
BLAST of mRNA_P-canaliculata_contig98984.24014.1 vs. uniprot
Match: A0A4Q0PNC7_9FLAO (Tubulin-specific chaperone A n=1 Tax=Leeuwenhoekiella marinoflava TaxID=988 RepID=A0A4Q0PNC7_9FLAO) HSP 1 Score: 62.4 bits (150), Expect = 5.460e-10 Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = 1 Query: 1 MAKRIVDEEMRFTIVVNGDKAQKELYDLEKSTRELTGRNKELRAEQAKLIASG 159 MAKRIVDEEMRF+I++NG++AQKEL DLEK+ R+L N++ R EQ KL G Sbjct: 1 MAKRIVDEEMRFSIIINGNEAQKELLDLEKANRKLLTANQKNRTEQRKLERQG 53
BLAST of mRNA_P-canaliculata_contig98984.24014.1 vs. uniprot
Match: UPI0007FE11C6 (phage tail tape measure protein n=1 Tax=Tamlana sp. s12 TaxID=1630406 RepID=UPI0007FE11C6) HSP 1 Score: 62.0 bits (149), Expect = 7.470e-10 Identity = 32/49 (65.31%), Postives = 42/49 (85.71%), Query Frame = 1 Query: 1 MAKRIVDEEMRFTIVVNGDKAQKELYDLEKSTRELTGRNKELRAEQAKL 147 M+K I+DE M+ +IVVNG++AQKEL++LEKSTR LT +NK+ R EQAKL Sbjct: 1 MSKTILDEVMKLSIVVNGNEAQKELFELEKSTRNLTAQNKQYREEQAKL 49
BLAST of mRNA_P-canaliculata_contig98984.24014.1 vs. uniprot
Match: UPI00047B9900 (phage tail tape measure protein n=1 Tax=Sediminibacter sp. Hel_I_10 TaxID=1392490 RepID=UPI00047B9900) HSP 1 Score: 58.9 bits (141), Expect = 9.120e-9 Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 1 Query: 1 MAKRIVDEEMRFTIVVNGDKAQKELYDLEKSTRELTGRN 117 MAKR+VDEEMRFT+V+NGD +KELYDLEK R LT N Sbjct: 1 MAKRVVDEEMRFTVVINGDAGKKELYDLEKRNRSLTASN 39
BLAST of mRNA_P-canaliculata_contig98984.24014.1 vs. uniprot
Match: A0A1I7GLC2_9FLAO (Phage tail tape measure protein, TP901 family, core region n=1 Tax=Pustulibacterium marinum TaxID=1224947 RepID=A0A1I7GLC2_9FLAO) HSP 1 Score: 55.8 bits (133), Expect = 1.120e-7 Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 1 Query: 1 MAKRIVDEEMRFTIVVNGDKAQKELYDLEKSTRELTGRNKELRAEQAKLIASG 159 MAK I DEE++ +I++NGD AQK+L+DL+KSTR L NK+LR E+ L G Sbjct: 1 MAKTITDEEIKLSIIINGDPAQKQLHDLDKSTRTLISDNKKLRDERRALEREG 53
BLAST of mRNA_P-canaliculata_contig98984.24014.1 vs. uniprot
Match: UPI001C5AF476 (phage tail tape measure protein n=1 Tax=Flavobacterium sp. NKUCC04_CG TaxID=2842121 RepID=UPI001C5AF476) HSP 1 Score: 54.3 bits (129), Expect = 3.910e-7 Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 1 Query: 1 MAKRIVDEEMRFTIVVNGDKAQKELYDLEKSTRELTGRNKELRAEQAKLIASG 159 MAKRIVDEE++ +I+++G+ AQKEL +LEKSTR L NKEL ++ L G Sbjct: 1 MAKRIVDEELKLSIIIDGNAAQKELLNLEKSTRSLNTENKELLTQKRLLEKQG 53 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98984.24014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig98984.24014.1 >prot_P-canaliculata_contig98984.24014.1 ID=prot_P-canaliculata_contig98984.24014.1|Name=mRNA_P-canaliculata_contig98984.24014.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=54bp MAKRIVDEEMRFTIVVNGDKAQKELYDLEKSTRELTGRNKELRAEQAKLIback to top mRNA from alignment at P-canaliculata_contig98984:3..164- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig98984.24014.1 ID=mRNA_P-canaliculata_contig98984.24014.1|Name=mRNA_P-canaliculata_contig98984.24014.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at P-canaliculata_contig98984:3..164- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig98984:3..164- >mRNA_P-canaliculata_contig98984.24014.1 ID=mRNA_P-canaliculata_contig98984.24014.1|Name=mRNA_P-canaliculata_contig98984.24014.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at P-canaliculata_contig98984:3..164- (Pelvetia canaliculata dioecious)back to top |