mRNA_P-canaliculata_contig98983.24013.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig98983.24013.1
Unique NamemRNA_P-canaliculata_contig98983.24013.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98983.24013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98983contigP-canaliculata_contig98983:111..635 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size525
Cds size525
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817351.1158874-CDS-P-canaliculata_contig98983:110..6351622817351.1158874-CDS-P-canaliculata_contig98983:110..635Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98983 111..635 -
1693495240.6660368-CDS-P-canaliculata_contig98983:110..6351693495240.6660368-CDS-P-canaliculata_contig98983:110..635Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98983 111..635 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98983.24013.1prot_P-canaliculata_contig98983.24013.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig98983 111..635 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig98983.24013.1

>prot_P-canaliculata_contig98983.24013.1 ID=prot_P-canaliculata_contig98983.24013.1|Name=mRNA_P-canaliculata_contig98983.24013.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=175bp
DVQGLLDKPFNWSFLFIAIGCLLAAVAIIYFLYRVFFTKAEINSKTNYEI
QLQKLGSASKLIGEDKQDLKTFYFEASMILRSVLQDCYEINLVDKTFAEL
QKVFDRHDPLKSASDSSSWLDFFRRSESIKFAGVAANLEDAQVDLGHVKD
WVAAADPKLKQDSPSDSMSKEGGS*
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mRNA from alignment at P-canaliculata_contig98983:111..635-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig98983.24013.1 ID=mRNA_P-canaliculata_contig98983.24013.1|Name=mRNA_P-canaliculata_contig98983.24013.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=525bp|location=Sequence derived from alignment at P-canaliculata_contig98983:111..635- (Pelvetia canaliculata dioecious)
GATGTACAAGGGCTTTTAGATAAGCCCTTCAATTGGTCATTCTTGTTTAT
AGCCATAGGTTGTCTGCTTGCTGCAGTGGCTATTATTTATTTTCTTTACA
GGGTTTTCTTCACTAAAGCTGAGATAAATTCAAAGACAAACTATGAGATA
CAGCTGCAAAAGTTAGGAAGTGCAAGCAAGCTGATAGGCGAGGATAAGCA
AGATCTGAAGACTTTTTATTTTGAAGCTAGTATGATTCTGCGCTCTGTTT
TGCAAGATTGCTATGAAATAAACCTGGTGGACAAAACATTCGCCGAATTG
CAAAAGGTCTTCGATCGTCACGATCCGCTGAAATCCGCCAGTGATTCTAG
TTCATGGCTAGACTTTTTTCGAAGATCCGAAAGTATAAAGTTTGCTGGTG
TCGCAGCAAATCTGGAAGATGCACAGGTTGATCTTGGCCACGTTAAGGAC
TGGGTTGCTGCCGCAGATCCTAAGCTCAAACAGGACAGTCCTTCTGACTC
AATGTCGAAGGAGGGTGGGAGCTAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig98983:111..635-

>mRNA_P-canaliculata_contig98983.24013.1 ID=mRNA_P-canaliculata_contig98983.24013.1|Name=mRNA_P-canaliculata_contig98983.24013.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1050bp|location=Sequence derived from alignment at P-canaliculata_contig98983:111..635- (Pelvetia canaliculata dioecious)
GATGTACAAGGGCTTTTAGATAAGCCCTTCAATTGGTCATTCTTGTTTAT
AGCCATAGGTTGTCTGCTTGCTGCAGTGGCTATTATTTATTTTCTTTACA
GGGTTTTCTTCACTAAAGCTGAGATAAATTCAAAGACAAACTATGAGATA
CAGCTGCAAAAGTTAGGAAGTGCAAGCAAGCTGATAGGCGAGGATAAGCA
AGATCTGAAGACTTTTTATTTTGAAGCTAGTATGATTCTGCGCTCTGTTT
TGCAAGATTGCTATGAAATAAACCTGGTGGACAAAACATTCGCCGAATTG
CAAAAGGTCTTCGATCGTCACGATCCGCTGAAATCCGCCAGTGATTCTAG
TTCATGGCTAGACTTTTTTCGAAGATCCGAAAGTATAAAGTTTGCTGGTG
TCGCAGCAAATCTGGAAGATGCACAGGTTGATCTTGGCCACGTTAAGGAC
TGGGTTGCTGCCGCAGATCCTAAGCTCAAACAGGACAGTCCTTCTGACTC
AATGTCGAAGGAGGGTGGGAGCTAAGATGTACAAGGGCTTTTAGATAAGC
CCTTCAATTGGTCATTCTTGTTTATAGCCATAGGTTGTCTGCTTGCTGCA
GTGGCTATTATTTATTTTCTTTACAGGGTTTTCTTCACTAAAGCTGAGAT
AAATTCAAAGACAAACTATGAGATACAGCTGCAAAAGTTAGGAAGTGCAA
GCAAGCTGATAGGCGAGGATAAGCAAGATCTGAAGACTTTTTATTTTGAA
GCTAGTATGATTCTGCGCTCTGTTTTGCAAGATTGCTATGAAATAAACCT
GGTGGACAAAACATTCGCCGAATTGCAAAAGGTCTTCGATCGTCACGATC
CGCTGAAATCCGCCAGTGATTCTAGTTCATGGCTAGACTTTTTTCGAAGA
TCCGAAAGTATAAAGTTTGCTGGTGTCGCAGCAAATCTGGAAGATGCACA
GGTTGATCTTGGCCACGTTAAGGACTGGGTTGCTGCCGCAGATCCTAAGC
TCAAACAGGACAGTCCTTCTGACTCAATGTCGAAGGAGGGTGGGAGCTAA
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