mRNA_P-canaliculata_contig98970.24012.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig98970.24012.1
Unique NamemRNA_P-canaliculata_contig98970.24012.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98970.24012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98970contigP-canaliculata_contig98970:505..819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817351.061347-CDS-P-canaliculata_contig98970:504..8101622817351.061347-CDS-P-canaliculata_contig98970:504..810Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98970 505..810 -
1693495240.6431253-CDS-P-canaliculata_contig98970:504..8101693495240.6431253-CDS-P-canaliculata_contig98970:504..810Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98970 505..810 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817351.0777867-UTR-P-canaliculata_contig98970:810..8191622817351.0777867-UTR-P-canaliculata_contig98970:810..819Pelvetia canaliculata dioeciousUTRP-canaliculata_contig98970 811..819 -
1693495240.6563497-UTR-P-canaliculata_contig98970:810..8191693495240.6563497-UTR-P-canaliculata_contig98970:810..819Pelvetia canaliculata dioeciousUTRP-canaliculata_contig98970 811..819 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98970.24012.1prot_P-canaliculata_contig98970.24012.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig98970 505..810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig98970.24012.1

>prot_P-canaliculata_contig98970.24012.1 ID=prot_P-canaliculata_contig98970.24012.1|Name=mRNA_P-canaliculata_contig98970.24012.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=102bp
MMVRAKNEKLYVDQLDPKGNAATAGVRTGDQLVAGGGVDFESVADFNGIA
EVLEDGDQLEFVVKRGGGKKEMLIVYGKATADQAGGMLEGSFESNSAAQK
TS
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mRNA from alignment at P-canaliculata_contig98970:505..819-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig98970.24012.1 ID=mRNA_P-canaliculata_contig98970.24012.1|Name=mRNA_P-canaliculata_contig98970.24012.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=315bp|location=Sequence derived from alignment at P-canaliculata_contig98970:505..819- (Pelvetia canaliculata dioecious)
GGTTTTGGGATGATGGTCAGAGCGAAAAATGAAAAGCTGTACGTAGACCA
GCTTGACCCCAAAGGAAACGCCGCCACAGCAGGTGTGCGGACTGGCGATC
AACTCGTTGCTGGCGGTGGAGTCGATTTTGAATCGGTTGCCGACTTTAAC
GGCATCGCAGAAGTTCTCGAAGACGGCGACCAGCTGGAGTTTGTGGTTAA
ACGTGGCGGTGGCAAAAAAGAAATGCTGATCGTTTACGGCAAAGCCACAG
CAGATCAAGCTGGCGGGATGCTTGAGGGAAGCTTTGAGTCGAATAGCGCA
GCTCAAAAGACCTCC
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Coding sequence (CDS) from alignment at P-canaliculata_contig98970:505..819-

>mRNA_P-canaliculata_contig98970.24012.1 ID=mRNA_P-canaliculata_contig98970.24012.1|Name=mRNA_P-canaliculata_contig98970.24012.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at P-canaliculata_contig98970:505..819- (Pelvetia canaliculata dioecious)
ATGATGGTCAGAGCGAAAAATGAAAAGCTGTACGTAGACCAGCTTGACCC
CAAAGGAAACGCCGCCACAGCAGGTGTGCGGACTGGCGATCAACTCGTTG
CTGGCGGTGGAGTCGATTTTGAATCGGTTGCCGACTTTAACGGCATCGCA
GAAGTTCTCGAAGACGGCGACCAGCTGGAGTTTGTGGTTAAACGTGGCGG
TGGCAAAAAAGAAATGCTGATCGTTTACGGCAAAGCCACAGCAGATCAAG
CTGGCGGGATGCTTGAGGGAAGCTTTGAGTCGAATAGCGCAGCTCAAAAG
ACCTCCATGATGGTCAGAGCGAAAAATGAAAAGCTGTACGTAGACCAGCT
TGACCCCAAAGGAAACGCCGCCACAGCAGGTGTGCGGACTGGCGATCAAC
TCGTTGCTGGCGGTGGAGTCGATTTTGAATCGGTTGCCGACTTTAACGGC
ATCGCAGAAGTTCTCGAAGACGGCGACCAGCTGGAGTTTGTGGTTAAACG
TGGCGGTGGCAAAAAAGAAATGCTGATCGTTTACGGCAAAGCCACAGCAG
ATCAAGCTGGCGGGATGCTTGAGGGAAGCTTTGAGTCGAATAGCGCAGCT
CAAAAGACCTCC
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