mRNA_P-canaliculata_contig9876.23984.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9876.23984.1
Unique NamemRNA_P-canaliculata_contig9876.23984.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig9876.23984.1 vs. uniprot
Match: A0A0P6JS54_AEDAE (Putative pol polyprotein (Fragment) n=2 Tax=Aedes aegypti TaxID=7159 RepID=A0A0P6JS54_AEDAE)

HSP 1 Score: 84.3 bits (207), Expect = 8.080e-17
Identity = 43/92 (46.74%), Postives = 54/92 (58.70%), Query Frame = 1
Query:   13 ITHEFTLPDTPQYNGVAERALGLLREKSIAMLQEMTVAAGDRPWAEALNYACYMSNMCVTSSLEGGTSPYEKWYGRKPSLQHLQPFGTVGYA 288
            I  +FT P TPQ NG+AER    L E +  ML +  +    + WAEA+N A Y+ N   T SLE   +PYE W+G KP L H+QPFGT  Y 
Sbjct:  556 IRQQFTTPHTPQQNGIAERKNRTLNEMARCMLLDAGLPT--KYWAEAVNTASYLQNRLPTRSLE--VTPYEAWWGEKPDLSHVQPFGTDAYV 643          
BLAST of mRNA_P-canaliculata_contig9876.23984.1 vs. uniprot
Match: A0A7D9JVW6_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JVW6_PARCT)

HSP 1 Score: 84.0 bits (206), Expect = 1.070e-16
Identity = 39/92 (42.39%), Postives = 60/92 (65.22%), Query Frame = 1
Query:   13 ITHEFTLPDTPQYNGVAERALGLLREKSIAMLQEMTVAAGDRPWAEALNYACYMSNMCVTSSLEGGTSPYEKWYGRKPSLQHLQPFGTVGYA 288
            I HE T+P +PQ NGVAER    L E + +M+ +  +      WAEA++ A Y+ N   T++++G T+PYE+WY RKP++ HL+ FG + +A
Sbjct:  481 IKHELTVPYSPQQNGVAERMNRTLVESARSMIAQARLPK--MYWAEAISTAVYVRNRMPTTAIKGNTTPYERWYERKPNVSHLRVFGCMAFA 570          
BLAST of mRNA_P-canaliculata_contig9876.23984.1 vs. uniprot
Match: UPI0016531AD1 (uncharacterized protein LOC110900599 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI0016531AD1)

HSP 1 Score: 83.6 bits (205), Expect = 1.510e-16
Identity = 43/98 (43.88%), Postives = 58/98 (59.18%), Query Frame = 1
Query:    1 DSHAITHEFTLPDTPQYNGVAERALGLLREKSIAMLQEMTVAAGDRPWAEALNYACYMSNMCVTSSLEGGTSPYEKWYGRKPSLQHLQPFGTVGYARK 294
            + H I  + T P TPQ NGV ER    + E + ++L+ M V   D  W EA+ +A Y+ N   T +L   T PYE+W GRKP+LQHL+ FG V Y +K
Sbjct:  625 EEHGINRQLTAPYTPQQNGVVERRNRTVLEATRSLLKTMKVP--DTFWGEAVRHAVYVLNRVSTKALNNMT-PYERWKGRKPTLQHLRVFGCVAYVKK 719          
BLAST of mRNA_P-canaliculata_contig9876.23984.1 vs. uniprot
Match: A0A6S7JQN7_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JQN7_PARCT)

HSP 1 Score: 82.4 bits (202), Expect = 3.720e-16
Identity = 38/92 (41.30%), Postives = 59/92 (64.13%), Query Frame = 1
Query:   13 ITHEFTLPDTPQYNGVAERALGLLREKSIAMLQEMTVAAGDRPWAEALNYACYMSNMCVTSSLEGGTSPYEKWYGRKPSLQHLQPFGTVGYA 288
            I HE T+P +PQ NGVAER    L E + +M+ +  +      WAEA++ A Y+ N   T++++G T+PYE+WY RKP++ H + FG + +A
Sbjct:  553 IKHELTVPYSPQQNGVAERMNRTLVESARSMIAQARLPK--MYWAEAISTAVYVRNRMPTTAIKGNTTPYERWYERKPNVSHFRVFGCMAFA 642          
BLAST of mRNA_P-canaliculata_contig9876.23984.1 vs. uniprot
Match: A0A151R9Q4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151R9Q4_CAJCA)

HSP 1 Score: 81.3 bits (199), Expect = 9.250e-16
Identity = 43/96 (44.79%), Postives = 59/96 (61.46%), Query Frame = 1
Query:    1 DSHAITHEFTLPDTPQYNGVAERALGLLREKSIAMLQEMTVAAGDRPWAEALNYACYMSNMCVTSSLEGGTSPYEKWYGRKPSLQHLQPFGTVGYA 288
            D   I H+FT+P TPQ NGV+ER    + E +  +L E  +      WAEA+N + Y+ N+  T +L+G T PYE W GRKPS++HL+ FG V Y 
Sbjct:  392 DQAGIQHQFTVPYTPQQNGVSERKNRTVMEMARCLLFEKGLPKTF--WAEAVNTSVYLLNLLPTKALKGKT-PYEAWCGRKPSVEHLKIFGCVCYT 484          
BLAST of mRNA_P-canaliculata_contig9876.23984.1 vs. uniprot
Match: W8C3B0_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8C3B0_CERCA)

HSP 1 Score: 81.3 bits (199), Expect = 9.520e-16
Identity = 43/92 (46.74%), Postives = 56/92 (60.87%), Query Frame = 1
Query:   13 ITHEFTLPDTPQYNGVAERALGLLREKSIAMLQEMTVAAGDRPWAEALNYACYMSNMCVTSSLEGGTSPYEKWYGRKPSLQHLQPFGTVGYA 288
            I H+FT+P TPQ NGVAER    L E +  ML    ++  +  WAEA+N A Y+ N   T +LE  T PYE WY RKP + H + FG++ YA
Sbjct:  107 ILHQFTVPYTPQQNGVAERFNRTLVEMARCMLVGANLS--EYLWAEAVNTAAYLRNRSTTKALEVMT-PYEAWYKRKPVVSHFKTFGSIAYA 195          
BLAST of mRNA_P-canaliculata_contig9876.23984.1 vs. uniprot
Match: A0A0J7K1E5_LASNI (Gag-pol polyprotein (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K1E5_LASNI)

HSP 1 Score: 80.5 bits (197), Expect = 1.770e-15
Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = 1
Query:   13 ITHEFTLPDTPQYNGVAERALGLLREKSIAMLQEMTVAAGDRPWAEALNYACYMSNMCVTSSLEGGTSPYEKWYGRKPSLQHLQPFGTVGYA 288
            I  E+T+P TPQ NGVAER    L E +  +L +  +   D  WAEA++ A Y+ N C T +L G  +P+E W+GRKP++ H + FG   Y 
Sbjct:    2 IKREYTVPHTPQQNGVAERMNRTLVEMARCLLSQANLP--DEFWAEAVSTAAYIRNRCPTKAL-GNMTPFESWFGRKPNVSHFKTFGCKAYV 90          
BLAST of mRNA_P-canaliculata_contig9876.23984.1 vs. uniprot
Match: A0A0A9XC07_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XC07_LYGHE)

HSP 1 Score: 79.3 bits (194), Expect = 3.960e-15
Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 1
Query:   22 EFTLPDTPQYNGVAERALGLLREKSIAMLQEMTVAAGDRPWAEALNYACYMSNMCVTSSLEGGTSPYEKWYGRKPSLQHLQPFGTVGYAR 291
            +FT P TPQ NG +ER    +  K+ A+L E  +   D  W EA+  A Y+ N   TS+++  T+P+EKWYGRKP + H+Q FG   Y +
Sbjct:    1 DFTTPGTPQLNGKSERIGRTIMNKARALLMESGL--NDEMWGEAVQVAAYLLNRGYTSTVD--TTPFEKWYGRKPDMSHIQKFGCTAYKK 86          
BLAST of mRNA_P-canaliculata_contig9876.23984.1 vs. uniprot
Match: UPI001F07AA44 (LOW QUALITY PROTEIN: uncharacterized protein LOC6637668 n=1 Tax=Drosophila willistoni TaxID=7260 RepID=UPI001F07AA44)

HSP 1 Score: 77.8 bits (190), Expect = 1.550e-14
Identity = 41/90 (45.56%), Postives = 54/90 (60.00%), Query Frame = 1
Query:    4 SHAITHEFTLPDTPQYNGVAERALGLLREKSIAMLQEMTVAAGDRPWAEALNYACYMSNMCVTSSLEGGTSPYEKWYGRKPSLQHLQPFG 273
            SH I  + T+P TPQ N VAERA   L E + +M+    V  G+  W EA+  A Y+ N   T++L   T PYE WYG+KPS+ HL+ FG
Sbjct:   33 SHGIKRQLTVPHTPQQNSVAERANRTLVEMARSMIVHAGV--GESFWGEAIMTAAYLRNRAETATLPDNT-PYEVWYGKKPSVSHLKVFG 119          
BLAST of mRNA_P-canaliculata_contig9876.23984.1 vs. uniprot
Match: A0A2Z6N9Q0_TRISU (Integrase catalytic domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6N9Q0_TRISU)

HSP 1 Score: 77.8 bits (190), Expect = 1.590e-14
Identity = 41/91 (45.05%), Postives = 57/91 (62.64%), Query Frame = 1
Query:   13 ITHEFTLPDTPQYNGVAERALGLLREKSIAMLQEMTVAAGDRPWAEALNYACYMSNMCVTSSLEGGTSPYEKWYGRKPSLQHLQPFGTVGY 285
            I H+FT+P TPQ NGV+ER    + E +  +L E  +      WAEA+N + Y+ N+  T  L+G T P+E WY RKPS++HL+ FG V Y
Sbjct:  605 IQHQFTVPYTPQQNGVSERKNRTVMEMARCLLFEKGIPKTF--WAEAVNTSVYLLNLLPTKVLKGKT-PFEAWYERKPSVEHLRIFGCVCY 692          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9876.23984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0P6JS54_AEDAE8.080e-1746.74Putative pol polyprotein (Fragment) n=2 Tax=Aedes ... [more]
A0A7D9JVW6_PARCT1.070e-1642.39Retrovirus-related Pol poly from transposon TNT 1-... [more]
UPI0016531AD11.510e-1643.88uncharacterized protein LOC110900599 n=1 Tax=Helia... [more]
A0A6S7JQN7_PARCT3.720e-1641.30Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A151R9Q4_CAJCA9.250e-1644.79Retrovirus-related Pol polyprotein from transposon... [more]
W8C3B0_CERCA9.520e-1646.74Retrovirus-related Pol polyprotein from transposon... [more]
A0A0J7K1E5_LASNI1.770e-1542.39Gag-pol polyprotein (Fragment) n=1 Tax=Lasius nige... [more]
A0A0A9XC07_LYGHE3.960e-1542.22Retrovirus-related Pol polyprotein from transposon... [more]
UPI001F07AA441.550e-1445.56LOW QUALITY PROTEIN: uncharacterized protein LOC66... [more]
A0A2Z6N9Q0_TRISU1.590e-1445.05Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9876contigP-canaliculata_contig9876:3315..3626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score78.6
Seed ortholog evalue2e-12
Seed eggNOG ortholog7425.NV18849-PA
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817348.9392982-CDS-P-canaliculata_contig9876:3314..36261622817348.9392982-CDS-P-canaliculata_contig9876:3314..3626Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9876 3315..3626 -
1693495239.1545017-CDS-P-canaliculata_contig9876:3314..36261693495239.1545017-CDS-P-canaliculata_contig9876:3314..3626Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9876 3315..3626 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9876.23984.1prot_P-canaliculata_contig9876.23984.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9876 3315..3626 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9876.23984.1

>prot_P-canaliculata_contig9876.23984.1 ID=prot_P-canaliculata_contig9876.23984.1|Name=mRNA_P-canaliculata_contig9876.23984.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=104bp
DSHAITHEFTLPDTPQYNGVAERALGLLREKSIAMLQEMTVAAGDRPWAE
ALNYACYMSNMCVTSSLEGGTSPYEKWYGRKPSLQHLQPFGTVGYARKRE
RTN*
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mRNA from alignment at P-canaliculata_contig9876:3315..3626-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9876.23984.1 ID=mRNA_P-canaliculata_contig9876.23984.1|Name=mRNA_P-canaliculata_contig9876.23984.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=312bp|location=Sequence derived from alignment at P-canaliculata_contig9876:3315..3626- (Pelvetia canaliculata dioecious)
GACTCGCACGCCATCACTCACGAGTTCACACTACCTGATACGCCACAATA CAATGGGGTGGCAGAGCGAGCCCTCGGACTATTACGAGAAAAGTCTATCG CAATGCTGCAAGAAATGACAGTGGCTGCAGGTGACAGACCATGGGCTGAG GCACTAAACTATGCCTGCTATATGTCCAATATGTGTGTCACATCATCACT TGAGGGCGGCACATCGCCGTATGAGAAGTGGTATGGCAGAAAACCATCTC TGCAGCACCTTCAACCATTTGGCACCGTCGGATACGCGCGAAAAAGAGAG CGCACAAATTAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig9876:3315..3626-

>mRNA_P-canaliculata_contig9876.23984.1 ID=mRNA_P-canaliculata_contig9876.23984.1|Name=mRNA_P-canaliculata_contig9876.23984.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at P-canaliculata_contig9876:3315..3626- (Pelvetia canaliculata dioecious)
GACTCGCACGCCATCACTCACGAGTTCACACTACCTGATACGCCACAATA
CAATGGGGTGGCAGAGCGAGCCCTCGGACTATTACGAGAAAAGTCTATCG
CAATGCTGCAAGAAATGACAGTGGCTGCAGGTGACAGACCATGGGCTGAG
GCACTAAACTATGCCTGCTATATGTCCAATATGTGTGTCACATCATCACT
TGAGGGCGGCACATCGCCGTATGAGAAGTGGTATGGCAGAAAACCATCTC
TGCAGCACCTTCAACCATTTGGCACCGTCGGATACGCGCGAAAAAGAGAG
CGCACAAATTAGGACTCGCACGCCATCACTCACGAGTTCACACTACCTGA
TACGCCACAATACAATGGGGTGGCAGAGCGAGCCCTCGGACTATTACGAG
AAAAGTCTATCGCAATGCTGCAAGAAATGACAGTGGCTGCAGGTGACAGA
CCATGGGCTGAGGCACTAAACTATGCCTGCTATATGTCCAATATGTGTGT
CACATCATCACTTGAGGGCGGCACATCGCCGTATGAGAAGTGGTATGGCA
GAAAACCATCTCTGCAGCACCTTCAACCATTTGGCACCGTCGGATACGCG
CGAAAAAGAGAGCGCACAAATTAG
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