mRNA_P-canaliculata_contig9873.23982.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9873.23982.1
Unique NamemRNA_P-canaliculata_contig9873.23982.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig9873.23982.1 vs. uniprot
Match: A0A6H5JFY4_9PHAE (zf-C2HC5 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFY4_9PHAE)

HSP 1 Score: 327 bits (838), Expect = 8.080e-100
Identity = 294/627 (46.89%), Postives = 338/627 (53.91%), Query Frame = 3 
Query:  138 MGDTRAWFEGELRRMLGFDEVEEIARFALDSYSASQAVELRQYLEQFLGQSHEVRKLCDELSSRRSAAAPLSASKTGSARRQHASAGEDFWGAGGSSGAATRAATAPGGG-VRGQEHERKPAAKGRAKGKAYKKST-EEDFWGGGTTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGKLPTKPEPTGASSKSSARQEHSMSSAAASAGKLRGARAKGRGGKVAA------------------------------GAQTPGPAKSVPSATNVSEQTKKTATWSGVTCLCMGKNHDAITNCTVCGKIACVEEGGFGCSFCGSALPVTGREPRRSGESKRGDSEGSTVAAVETADPTQSAALKEALGRKDKLLLFDRTSASRTRVLDDQGDYFTSHNWLSREEREEEEAKEKAHRDEAAQRRGARRQVKLSIDIMGRRVIETKEPG------DGQAGGQAQDENEQGERLGAAAEEIARVGGVGDDTGGAFAGVDPRNGPRKADQDPA---NHWPSVENTGLRGRAKEVYDVMRANLEKQGRR-RPGGNSTKR-GGFRVA----EKSRVSLWRVQHDVDSDDVVRQNQVGGSNRGVGVGHEEIDFERFGPIDEL 1877
            M  TRAWFEGELRRMLGFDEVEEIARFALDS+  SQ VELRQYLEQFLGQS   + L                                               TA GG               G+ +GK Y+K+  EEDFWGGGTT            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            G ++              A+ G + G R   +    ++                               A+T    +++P+   V E       WSGVTCLCMGK HD +TNCT CGKIACV+EGGFGCSFCG  LP TGREPR    +  G  +G+  AA        SAALKEAL RKD+LLLFDRTSASRTRVLDDQGDYFTSHNWLS+ ERE+ EA+EKA RD+AA RRGARRQVK+SIDIMGRRVIET  PG      DG  G    DE+   +  G + +  +                       +AD   A   N   S+ENTGLRGRAKEVYDVMRANL+K+ RR RPGG   K   G R+     E SRV+LWRVQHDVDSDD++RQ+Q  G             F +F P DEL
Sbjct:    1 MAKTRAWFEGELRRMLGFDEVEEIARFALDSFPVSQPVELRQYLEQFLGQSRGGKSLL----------------------------------------------TAEGGNNXXXXXXXXXXXXXGKGRGKVYQKAAVEEDFWGGGTTSGRVKPASAPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRAGGAT------------GTATKGDVGGGRVSSKQPLASSPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKTTALPETLPAPAPVPE-------WSGVTCLCMGKTHDVVTNCTDCGKIACVKEGGFGCSFCGCRLPTTGREPR---SATSGGVDGAAGAAA-----PHSAALKEALERKDRLLLFDRTSASRTRVLDDQGDYFTSHNWLSQREREKGEAEEKARRDDAASRRGARRQVKMSIDIMGRRVIETH-PGEDGGLADGGGGEXXADEDASRKTQGVSLDFGSXXXXXXXXXXXXXXXXXXXXXAEEADTPGAGNGNQRLSLENTGLRGRAKEVYDVMRANLDKKSRRQRPGGAGGKAVAGSRIVGAVPEASRVNLWRVQHDVDSDDLLRQSQASGXXXXXXX-XXXXGFGKFEPADEL 552
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BLAST of mRNA_P-canaliculata_contig9873.23982.1 vs. uniprot
Match: D7FU14_ECTSI (Similar to thyroid hormone receptor interactor 4 isoform 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU14_ECTSI)

HSP 1 Score: 291 bits (746), Expect = 2.110e-89
Identity = 187/336 (55.65%), Postives = 220/336 (65.48%), Query Frame = 3 
Query:  954 MGKNHDAITNCTVCGKIACVEEGGFGCSFCGSALPVTGREPRRSGESKRGDSEGSTVAAVETADPTQSAALKEALGRKDKLLLFDRTSASRTRVLDDQGDYFTSHNWLSREEREEEEAKEKAHRDEAAQRRGARRQVKLSIDIMGRRVIETKEPGDGQA---GGQAQDENE-----QGERL---------GAAAEEIARV---GGVGDDTGGAFAGVDPRNGPRKADQDPANHWPSVENTGLRGRAKEVYDVMRANLEKQGRRR-PGGNSTKR-GGFRVA----EKSRVSLWRVQHDVDSDDVVRQNQVGGSNRGVGVGHEEIDFERFGPIDELGC 1883
            MGK HD +TNCT CGKIACV+EGGFGCSFCG  LP TGREPR +       + G+T          QSAALKEAL RKD+LLLFDRTSASRTRVLDDQGDYFTSHNWLS+ ERE+ EA+EK  RD+AA RRGARRQVK+SIDIMGRRVIET++PG+G+A   GG+ + +++     QG  L         G AA   A     G +G++ G + AG    NG         N   S+ENTGLRGRAKEVYDVMRANL+K+ RRR P G   K   G R+     E SRV+LWRVQHDVDSDD++RQ+Q  G             F +F P DEL C
Sbjct:    1 MGKTHDVVTNCTDCGKIACVKEGGFGCSFCGCRLPTTGREPRSAASGGVDGAAGATA--------PQSAALKEALERKDRLLLFDRTSASRTRVLDDQGDYFTSHNWLSQREREKGEAEEKVRRDDAASRRGARRQVKMSIDIMGRRVIETQDPGEGRADGGGGEGEADDDASKKTQGVSLDFGSSSAAGGGAAGSSAXXXXXGSIGEEAGTSGAG----NG---------NQRLSLENTGLRGRAKEVYDVMRANLDKKSRRRRPRGAGGKAVAGSRIVGAVPETSRVNLWRVQHDVDSDDLLRQSQASGXXXXXXX-XXXXGFGKFEPADELAC 314
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BLAST of mRNA_P-canaliculata_contig9873.23982.1 vs. uniprot
Match: UPI00077AD339 (activating signal cointegrator 1-like n=2 Tax=Acropora TaxID=6127 RepID=UPI00077AD339)

HSP 1 Score: 100 bits (248), Expect = 2.260e-18
Identity = 65/164 (39.63%), Postives = 100/164 (60.98%), Query Frame = 3 
Query:  945 CLCMGKNHDAITNCTVCGKIACVEEGGFGCSFCGSALPVTGREPRRSGESKRGDS--EGSTVAAVETA-DPTQSAA---LKEALGRKDKLLLFDRTSASRTRVLDDQGDYFTS--HNWLSREEREEEEAKEKAHRDEAAQRRGARRQVKLSIDIMGRRVIETKE 1412
            C C+G+ H  I NC  CG+I C++EG   C FCG+ +  T  +   + +SK+     E     ++E A + T S A   L+EA+  K+KL+ FD++   RT+V+DD+ DYF S  + WLS+ ER+    KE+  R++   R G+RRQ+K+++D  GRRVI+ KE
Sbjct:  134 CECLGQKHQLINNCIECGRIVCMQEGSGPCYFCGALVCSTEEKEILAQKSKKSQKLYEKLLTRSIEDASEETLSVADKGLQEAIAHKNKLIEFDKSGVRRTKVIDDECDYFASDSNRWLSKRERDTLRKKEEDLREK---RHGSRRQMKVTLDFAGRRVIDEKE 294
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BLAST of mRNA_P-canaliculata_contig9873.23982.1 vs. uniprot
Match: A7RPW2_NEMVE (Predicted protein n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7RPW2_NEMVE)

HSP 1 Score: 98.2 bits (243), Expect = 9.080e-18
Identity = 60/167 (35.93%), Postives = 99/167 (59.28%), Query Frame = 3 
Query:  945 CLCMGKNHDAITNCTVCGKIACVEEGGFGCSFCGSAL------PVTGREPRRSGE------SKRGDSEGSTVAAVETADPTQSAALKEALGRKDKLLLFDRTSASRTRVLDDQGDYFTS--HNWLSREEREEEEAKEKAHRDEAAQRRGARRQVKLSIDIMGRRVIE 1403
            C C+G+ H  + NCT CG+I C +EG   C FCG+ +       +  RE ++S +      S+    E  +   + T++      L +A+  K+KLL +D+TS  RT+V+DD+ DYF++  + WLS++E+E+   KE+  R   A+R G+RR +K+++D  GRRV+E
Sbjct:  125 CECLGQKHGLVNNCTSCGRIVCDQEGAGPCYFCGALVCSRAEQEIIARESKKSAKLLKQLMSQEFSEEVKSQGRMGTSNGKDLQGLDKAIAHKNKLLEYDKTSVCRTKVIDDECDYFSTDGNKWLSKKEKEQLTVKEEELR---AKRHGSRRDMKITLDFAGRRVVE 288
[Close]
BLAST of mRNA_P-canaliculata_contig9873.23982.1 vs. uniprot
Match: A0A0C9R7G9_9HYME (Trip4_1 protein n=2 Tax=Fopius arisanus TaxID=64838 RepID=A0A0C9R7G9_9HYME)

HSP 1 Score: 97.1 bits (240), Expect = 1.940e-17
Identity = 62/160 (38.75%), Postives = 90/160 (56.25%), Query Frame = 3 
Query:  939 VTCLCMGKNHDAITNCTVCGKIACVEEGGFGCSFCGSALPVTGREPRRSGESKRGDSEGSTVAAVETADPTQSAALKEALGRKDKLLLFDRTSASRTRVLDDQGDYFTSHN--WLSREEREEEEAKEKAHRDEAAQRRGARRQVKLSIDIMGRRVIETKE 1412
            V C C  K H  I NC  CG+I C +EG   C FCG  +    ++   S  SK  D+  + +         +    K AL ++DKLL FDR SA RTRV+DD+ DY+ S N  WLS+EER E E +E   ++   ++ G+R + K ++DI GR+V+E ++
Sbjct:  132 VKCDCEAKTHKLINNCLTCGRIVCEQEGAGPCFFCGELVCTPNQQNVLSTNSKNSDNLYNKL--------MEQKPSKAALKQRDKLLEFDRNSAKRTRVIDDESDYYQSSNSVWLSKEERAEMERREAEMKE---RKYGSRLEKKFTVDIFGRQVVEEED 280
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BLAST of mRNA_P-canaliculata_contig9873.23982.1 vs. uniprot
Match: E9GBD9_DAPPU (ASCH domain-containing protein n=4 Tax=Daphnia TaxID=6668 RepID=E9GBD9_DAPPU)

HSP 1 Score: 92.8 bits (229), Expect = 4.440e-16
Identity = 63/169 (37.28%), Postives = 91/169 (53.85%), Query Frame = 3 
Query:  909 QTKKTATWSGV-TCLCMGKNHDAITNCTVCGKIACVEEGGFGCSFCGSALPVTGREPR-RSGESKRGDSEGSTVAAVETADPTQSAALKEALGRKDKLLLFDRTSASRTRVLDDQGDYFT--SHNWLSREEREEEEAKEKAHRDEAAQRRGARRQVKLSIDIMGRRVIE 1403
            Q K+T T  G   C C    H  + NC  CG++ C +EG   C FC   +    +E   +S  +    ++ S    ++   P    A   A+  K+KLL FDRTS  RTRV+DD+ DYF   S+ WL+ ++R+    KEK  RD    R G+RRQ+K+++D  GR+VIE
Sbjct:  116 QAKETITLPGQHKCECQASKHSLVRNCLECGRVICAQEGPGPCVFCTENMSACEKEALLQSNNAPAQRTKQSGRRFLDGTAPLPDKAFTTAMAHKEKLLEFDRTSEHRTRVIDDESDYFNADSNKWLNPKQRDALRTKEKELRDS---RHGSRRQIKVTLDFAGRQVIE 281
[Close]
BLAST of mRNA_P-canaliculata_contig9873.23982.1 vs. uniprot
Match: A0A6P8GZP8_ACTTE (activating signal cointegrator 1-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8GZP8_ACTTE)

HSP 1 Score: 92.4 bits (228), Expect = 6.500e-16
Identity = 60/166 (36.14%), Postives = 92/166 (55.42%), Query Frame = 3 
Query:  945 CLCMGKNHDAITNCTVCGKIACVEEGGFGCSFCGSALPVTGREPRRSGESKRGDSEGSTVAAVETADPTQSA------------ALKEALGRKDKLLLFDRTSASRTRVLDDQGDYF-TSHNWLSREEREEEEAKEKAHRDEAAQRRGARRQVKLSIDIMGRRVIE 1403
            C C+ + H  I NCT CG+I C +EG   C FCGS +    ++   + +SK+       +   + +D  +                + A+  K+KLL FD+TSA RT V+DD+ DYF T+  WLS EER + E KE+  R++   R G+RR +K+++D  GR+V+E
Sbjct:  134 CECLAQKHSLINNCTSCGRIVCEQEGEGPCYFCGSLVCTKAQKEILARDSKKSAKLLKQLMQQDFSDDVKKLQKXKNMSAQELEGYQRAVEHKNKLLEFDKTSARRTHVIDDEADYFSTNSKWLSTEERTKLEKKEEELREK---RHGSRRNMKVTLDFAGRKVVE 296
[Close]
BLAST of mRNA_P-canaliculata_contig9873.23982.1 vs. uniprot
Match: A0A0N8D2Q7_9CRUS (Activating signal cointegrator n=2 Tax=Daphnia magna TaxID=35525 RepID=A0A0N8D2Q7_9CRUS)

HSP 1 Score: 91.3 bits (225), Expect = 1.400e-15
Identity = 62/164 (37.80%), Postives = 91/164 (55.49%), Query Frame = 3 
Query:  945 CLCMGKNHDAITNCTVCGKIACVEEGGFGCSFCGSALPVTGRE---------PRRSGESKRGDSEGSTVAAVETADPTQSAALKEALGRKDKLLLFDRTSASRTRVLDDQGDYFTS--HNWLSREEREEEEAKEKAHRDEAAQRRGARRQVKLSIDIMGRRVIE 1403
            C C    H  I NC  CG++ C +EG   C FC   +P   +E         P+RS +S +G  +G T A  + A  T       A+  K+KLL FDRTS  RTRV+DD+ DYF +  + WL+ ++R+   +KE+  R+    R G+RR +K+++D  GR+VIE
Sbjct:  131 CECQASKHSLIRNCLECGRVICSQEGPGPCIFCTENMPANEKETYSQANKPAPQRSKQSGKGFLDG-TAALPDKAFTT-------AMAHKEKLLEFDRTSEHRTRVIDDESDYFNADGNKWLNPKQRDALRSKERELRES---RHGSRRGMKVTLDFAGRQVIE 283
[Close]
BLAST of mRNA_P-canaliculata_contig9873.23982.1 vs. uniprot
Match: UPI00106C9987 (activating signal cointegrator 1-like n=2 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C9987)

HSP 1 Score: 90.9 bits (224), Expect = 1.960e-15
Identity = 59/158 (37.34%), Postives = 88/158 (55.70%), Query Frame = 3 
Query:  945 CLCMGKNHDAITNCTVCGKIACVEEGGFGCSFCGSALPVTGREPRRSGESKRGDSEGSTVAAVETADPTQSAALK--EALGRKDKLLLFDRTSASRTRVLDDQGDYFTSHN-WLSREEREEEEAKEKAHRDEAAQRRGARRQVKLSIDIMGRRVIETK 1409
            C C+G+ H  + NC  CG+I C +EG   C FCG  +         +  SKRG      +     A  ++   LK  +A   KD+LL +DRTS  RT+V+DD+ DYF S + WLS++ER+    KEK  + +   + G+RR  K+++D  GR++IE K
Sbjct:  137 CECLGQKHSLVNNCLQCGRIVCEQEGSGPCYFCGEVVCTAEEREVLAKNSKRGQKLKEKLLESWNAKASEDEELKRRKATELKDRLLEYDRTSVRRTKVIDDESDYFASDSKWLSKKERKI--LKEKEDKLQKL-KHGSRRDKKVTLDFAGRKIIEEK 291
[Close]
BLAST of mRNA_P-canaliculata_contig9873.23982.1 vs. uniprot
Match: UPI0001CB9C0C (activating signal cointegrator 1-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CB9C0C)

HSP 1 Score: 90.5 bits (223), Expect = 3.240e-15
Identity = 62/170 (36.47%), Postives = 92/170 (54.12%), Query Frame = 3 
Query:  945 CLCMGKNHDAITNCTVCGKIACVEEGGFGCSFCGSA------LPVTGREPRRSGESKR---GDS--EGSTVAAVETADPTQSAALKEALGRKDKLLLFDRTSASRTRVLDDQGDYFTS--HNWLSREEREEEEAKEKAHRDEAAQRRGARRQVKLSIDIMGRRVIETKEP 1415
            C C    H  + NC  CG++ C +EG   C FCGS       L +  R   +S +  R   GD   +   +  VE       + L +A+  K+KL+ +D+TSA RT V+DD+ DYF +  + WLS++ERE  + +E   R+   QR G+RR  K+++D  GR+VIE  EP
Sbjct:  178 CECQAHRHRLVNNCIKCGRVVCDQEGAGPCFFCGSLVCSSEQLEILARNSHKSEKLMRKLMGDVIVKDKALGTVEKDSSKLCSGLDKAIMHKNKLIEYDKTSARRTHVIDDESDYFATDTNRWLSKKEREVLKNREDELRE---QRHGSRRGKKITLDFAGRKVIEDNEP 344
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9873.23982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFY4_9PHAE8.080e-10046.89zf-C2HC5 domain-containing protein n=1 Tax=Ectocar... [more]
D7FU14_ECTSI2.110e-8955.65Similar to thyroid hormone receptor interactor 4 i... [more]
UPI00077AD3392.260e-1839.63activating signal cointegrator 1-like n=2 Tax=Acro... [more]
A7RPW2_NEMVE9.080e-1835.93Predicted protein n=2 Tax=Nematostella vectensis T... [more]
A0A0C9R7G9_9HYME1.940e-1738.75Trip4_1 protein n=2 Tax=Fopius arisanus TaxID=6483... [more]
E9GBD9_DAPPU4.440e-1637.28ASCH domain-containing protein n=4 Tax=Daphnia Tax... [more]
A0A6P8GZP8_ACTTE6.500e-1636.14activating signal cointegrator 1-like n=1 Tax=Acti... [more]
A0A0N8D2Q7_9CRUS1.400e-1537.80Activating signal cointegrator n=2 Tax=Daphnia mag... [more]
UPI00106C99871.960e-1537.34activating signal cointegrator 1-like n=2 Tax=Dend... [more]
UPI0001CB9C0C3.240e-1536.47activating signal cointegrator 1-like n=1 Tax=Sacc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9873contigP-canaliculata_contig9873:2241..6933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score298.5
Seed ortholog evalue6.7e-78
Seed eggNOG ortholog2880.D7FU14
EggNOG free text desc.transcription coactivator activity
EggNOG OGsKOG2845@1,KOG2845@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, C2HC5-type
Ec32 orthologEc-27_001060.1
Exons4
Model size2158
Cds size1752
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9873.23982.1prot_P-canaliculata_contig9873.23982.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9873 3264..6664 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817348.7191715-UTR-P-canaliculata_contig9873:2240..22761622817348.7191715-UTR-P-canaliculata_contig9873:2240..2276Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9873 2241..2276 +
1693495239.012762-UTR-P-canaliculata_contig9873:2240..22761693495239.012762-UTR-P-canaliculata_contig9873:2240..2276Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9873 2241..2276 +
1622817348.734101-UTR-P-canaliculata_contig9873:3162..32631622817348.734101-UTR-P-canaliculata_contig9873:3162..3263Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9873 3163..3263 +
1693495239.0350423-UTR-P-canaliculata_contig9873:3162..32631693495239.0350423-UTR-P-canaliculata_contig9873:3162..3263Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9873 3163..3263 +
1622817348.790576-UTR-P-canaliculata_contig9873:6664..69331622817348.790576-UTR-P-canaliculata_contig9873:6664..6933Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9873 6665..6933 +
1693495239.0876875-UTR-P-canaliculata_contig9873:6664..69331693495239.0876875-UTR-P-canaliculata_contig9873:6664..6933Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9873 6665..6933 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817348.7467782-CDS-P-canaliculata_contig9873:3263..33231622817348.7467782-CDS-P-canaliculata_contig9873:3263..3323Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9873 3264..3323 +
1693495239.0476453-CDS-P-canaliculata_contig9873:3263..33231693495239.0476453-CDS-P-canaliculata_contig9873:3263..3323Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9873 3264..3323 +
1622817348.7626681-CDS-P-canaliculata_contig9873:4569..46651622817348.7626681-CDS-P-canaliculata_contig9873:4569..4665Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9873 4570..4665 +
1693495239.068233-CDS-P-canaliculata_contig9873:4569..46651693495239.068233-CDS-P-canaliculata_contig9873:4569..4665Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9873 4570..4665 +
1622817348.7770429-CDS-P-canaliculata_contig9873:5068..66641622817348.7770429-CDS-P-canaliculata_contig9873:5068..6664Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9873 5069..6664 +
1693495239.0785618-CDS-P-canaliculata_contig9873:5068..66641693495239.0785618-CDS-P-canaliculata_contig9873:5068..6664Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9873 5069..6664 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9873.23982.1

>prot_P-canaliculata_contig9873.23982.1 ID=prot_P-canaliculata_contig9873.23982.1|Name=mRNA_P-canaliculata_contig9873.23982.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=584bp
MGDTRAWFEGELRRMLGFDEVEEIARFALDSYSASQAVELRQYLEQFLGQ
SHEVRKLCDELSSRRSAAAPLSASKTGSARRQHASAGEDFWGAGGSSGAA
TRAATAPGGGVRGQEHERKPAAKGRAKGKAYKKSTEEDFWGGGTTVGTTS
GGQSSSMKSATNRPTPAAAPAPRSARNSGGSQKGSAGGGSGKLPTKPEPT
GASSKSSARQEHSMSSAAASAGKLRGARAKGRGGKVAAGAQTPGPAKSVP
SATNVSEQTKKTATWSGVTCLCMGKNHDAITNCTVCGKIACVEEGGFGCS
FCGSALPVTGREPRRSGESKRGDSEGSTVAAVETADPTQSAALKEALGRK
DKLLLFDRTSASRTRVLDDQGDYFTSHNWLSREEREEEEAKEKAHRDEAA
QRRGARRQVKLSIDIMGRRVIETKEPGDGQAGGQAQDENEQGERLGAAAE
EIARVGGVGDDTGGAFAGVDPRNGPRKADQDPANHWPSVENTGLRGRAKE
VYDVMRANLEKQGRRRPGGNSTKRGGFRVAEKSRVSLWRVQHDVDSDDVV
RQNQVGGSNRGVGVGHEEIDFERFGPIDELGCN*
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mRNA from alignment at P-canaliculata_contig9873:2241..6933+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9873.23982.1 ID=mRNA_P-canaliculata_contig9873.23982.1|Name=mRNA_P-canaliculata_contig9873.23982.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=4693bp|location=Sequence derived from alignment at P-canaliculata_contig9873:2241..6933+ (Pelvetia canaliculata dioecious)
TGCTGTCATCGTTGATCCAGGAATTCTCCACACGCGGTGAGCCTAGGTTA
GCTTTATGGAGAATAAAGCATGTGCTAAATCTGCCCTGTTAGTGAGCGAG
ATACGGTGGCTTGCGTGGAGGCATTTCGGAGAAACGAGCATCGGTGTGTC
ACATCACCCTGCACGTCAGAAGATAGCCCGAATTTGCAGTCGGAAGGGCA
GGCAGATACTTGTAACTCGCTTTCGGCTGATGGGCATCAACAACAACGTT
CCAGTTCAATCTATATGCTGCAACGTTGTAATCCTGCCTATGGTTACGAA
GGAATTTCTCATATCTCCCCGGTCCTCGCGCACGATTTTTTATCGCGATG
CAAGGTTCAGCAGACTGGTACACCTCCTCGTCAAACAATAATCGATTTTT
ATTTCAGTTCCTCCTACAGTACTCACGTTCTCGCCCTTTCCGCTACGGAA
ACCAGAATTAAAAGAAATCTTTCTCACTGTCAAGATAAAATTCGAACTCA
CGAATCCGCACGGTTCAATTGCTAGGTCATCCACTACTTTTGTCAATATC
TGTACTCGAATCGTGCATGCACGCCCTACACTAACTACCAACTCTGACTG
ATTGTCAAGTGCGCACAGAATCTTCCACAGCTGCTTCTACAATATACAGA
ACAAAGAGCAGTATCACAACAACGAAAAGCTCTTGTCCTGGTTTGGCCGC
ATGTTTTTCGTGAACTTACTACTATACTACAGTATATTAACAGCACAAGT
AGGGGAATCAGCAAGGAGCATCTGACGCAATTCAGGGTCGCGCGGGGGGT
GCTTCACCGATTGTCGCGTACGAGTGCGTGTATGGTTTTGCAGCTACTCT
GGGGCGGTCTCCTGTACATGGATGTAGTCTACGTTCTAACATTGGGCCGT
ATGTGTGCGGGTAATACTTCAGGCTACATAACGACAGCGTCTCGCCACGG
TCACCGTTCTTCAAATCGCGACCAGGAACAAACGGCGGAACTTCACGAGG
CGTTCGGGAAACTAAAGTTAGACATGGGCGACACTAGGGCGTGGTTCGAA
GGCGAGCTGAGACGGATGCTGGGGTTCGACGAGGTACGGAAACCTTGAGG
TCACGAGGGAGGCGTACTATTTAAGAGTGCGTAAAAAAAATGTGAACTTA
GGACACAAGCTCTTACTGTTTCAAAAATCTGAACGCATCTAGACGTTCTG
AGCATTCCCCAATCTCAAAACGTCTGCTGCTGTACAGTACAGTACAGTAC
GCTCTCTCGGAAAGCGTTAGGCGTGCGTAAGTAAAAAGTAAAACCATGGA
TATTGTAGACTAGATATTAACATGAATAGTGTAGTATAGTATAATAGATA
GGTTGATGAGGTTATTATTAATACTTAGAAGGGCCAAACCATTGGACAAA
CCATTGGACTACTCTGTCACGTGACTCAGTAGTCCGATGGTTTAGCCGTC
AGCAATCAAGAGATATGTCTTGGGCTCTTCAGTTCTCTTTTCCGGTAGCG
ACAGTGATCTCCGGGGACCTCCCCTCGCCGCGCGCTGCATTATACTATAT
CTCAATGTTTGCCACAACTAACTTTTTCCCTTTTTTCATCCTTGTCGCTG
CCGGGGATTGAACCCGCGACATATCCTTTGTTAGTTAGAAGGGCCAATCC
ATTGGACAGGAGTCACGTGACTCGGTAGTCCAATGGTTTGGCCAACTATT
AATAACAGAGGTGTCCCAAGAGTGCTCAACTTGCATCGCGCGTTCAAAAA
CAACCAATTCGTACCACAGTAGAAGTTAACGGGCAGCGTTACAGTATACC
TGTAGACGGGAATTGGTTGCATGGCACGTTGATAATGAGGACCACGGGTT
GTGCCTTAGACTAGTAATGGTACAGTAATAGAATATGTGCAACCCTCAAC
CCTAATCTTCTAGGATCAAGCATGAGGACACCGGCGCACCCGTTACTGAA
TGTTTTTCTTGTCCTGCTGTACAATTAATAGATAGCTCTACTAGATCTCT
ATTGGATTCCTTTCACTGTTCGTATTGACATTATTAGTATCCTTCCCTTC
CCAGTAGCTCTACAGAAGTACAACACGTTGGGCCTACGGTTGTAGTTGGT
GCTGTAAAGCATAGACCAAACTATTTCTATAGATCTAGGCATTCCACTTG
TTCCAGCATTCGATCGAATTCTGAAAGTGTTGGTTGAGATGTTCTACATA
AAGTACGTTGTACACTTGGGGCGTGCTGCCGAGGCACGGATCGGCTTAAG
GCTTTGAAACGCCGTCTGTACACTACATAGCATCTCTGCGACTCTCTGAA
CGCTTGCTTCCGTTGCCTCCTGCAAAAAGGTGGAAGAGATCGCGAGGTTT
GCGCTCGACAGCTATTCGGCGTCGCAGGCCGTTGAACTCAGGCAGTACCT
GGAGCAGTTCCTCGGTCAATCACATGTGAGCGCAACGTTTTTTACTGTAC
TATTCTAAAATTGTTCACAAGACACTAATCTGAGCCAACCGGAGATTCGC
CCTGCGGCTGTTCGCTGTACCGGCGATCTCTGGAAAACAAATACTTGTGT
GGTGTTGAGAGCAACGTCCGCTCCGCTGTGGGCCCAGGATGAAACGCTCT
CCTCTCGAATCGTAGGTCGTGCGCCTCTTAAAGTCAAGCTCATGTGAGAG
TCCATCAATCCGAGTACCGTGGAAAAAATTGCGAGGGCTACCGCTGTTTT
TGCCTTTAGATACCACCCATGGAACGGAGTCCTGGGGAGCACTAGCTTTA
CGCTCTCAGACTTCCTTTCATAGCGAGACAAATAATTTCAAGATTATTTG
CACTTGCTCGGAATCTCGCGTCTCCTAGGAAGTACGAAAACTCTGCGACG
AGCTCTCCTCGCGGCGAAGCGCAGCAGCCCCGTTGTCAGCATCGAAGACG
GGTTCGGCAAGAAGACAGCATGCTAGCGCGGGCGAGGACTTCTGGGGAGC
GGGAGGGAGCTCCGGCGCAGCTACTAGGGCGGCGACAGCGCCCGGGGGAG
GAGTAAGAGGGCAGGAGCACGAGCGAAAGCCAGCGGCCAAGGGCAGGGCA
AAGGGAAAGGCTTACAAAAAATCCACGGAAGAAGACTTCTGGGGAGGTGG
TACGACCGTTGGCACAACCTCTGGTGGCCAGTCATCCTCCATGAAGTCGG
CCACAAATCGACCTACTCCCGCCGCAGCGCCAGCTCCTCGCTCGGCGAGG
AACTCCGGGGGCAGCCAGAAGGGGAGCGCTGGTGGTGGCAGCGGCAAACT
CCCAACCAAGCCGGAACCAACAGGGGCCTCGTCGAAATCAAGCGCACGCC
AAGAACACAGCATGTCGTCCGCCGCTGCTTCTGCCGGCAAGCTCAGGGGC
GCGAGGGCGAAAGGGCGGGGCGGGAAAGTGGCAGCCGGCGCCCAAACGCC
AGGACCTGCGAAGAGTGTTCCTTCGGCGACTAATGTATCCGAACAGACGA
AGAAGACCGCGACGTGGTCGGGAGTGACTTGCCTGTGCATGGGAAAGAAC
CATGACGCGATCACAAACTGTACTGTGTGCGGGAAGATCGCGTGCGTGGA
GGAAGGCGGGTTCGGCTGCTCATTCTGCGGGTCGGCGCTGCCCGTGACGG
GCCGCGAGCCGCGCCGCTCCGGCGAGAGTAAAAGAGGCGATAGCGAAGGT
TCTACGGTTGCAGCGGTCGAGACAGCCGACCCGACACAGTCCGCTGCGCT
GAAGGAGGCGCTCGGAAGGAAGGACAAACTCCTTTTGTTCGATCGGACGT
CGGCGTCGAGGACGCGCGTACTGGACGACCAGGGAGACTACTTCACGAGC
CACAACTGGCTGTCGCGGGAGGAGCGCGAGGAGGAAGAGGCCAAGGAAAA
GGCCCACCGAGATGAAGCTGCCCAGCGCCGGGGAGCGAGGCGGCAGGTGA
AGCTCTCCATCGATATCATGGGTCGGAGGGTGATCGAGACTAAAGAGCCG
GGGGACGGACAGGCTGGGGGGCAAGCGCAAGACGAAAACGAACAAGGCGA
GCGCTTGGGGGCTGCGGCGGAAGAGATAGCCCGCGTTGGCGGCGTTGGAG
ATGATACAGGCGGCGCATTTGCCGGCGTGGACCCTCGCAACGGCCCCCGA
AAGGCTGATCAAGATCCAGCCAATCACTGGCCATCTGTAGAAAACACCGG
CCTCCGGGGTCGGGCAAAGGAGGTATACGACGTTATGCGGGCGAATCTGG
AGAAACAGGGGCGTAGGAGACCCGGTGGGAATTCCACCAAGCGAGGCGGT
TTCAGGGTGGCAGAGAAATCGCGCGTTAGCTTGTGGCGCGTTCAGCACGA
CGTGGATTCGGACGACGTCGTTAGGCAGAACCAGGTCGGAGGCTCTAATC
GAGGGGTCGGAGTTGGCCACGAGGAGATCGACTTCGAACGATTCGGGCCC
ATAGATGAATTGGGGTGCAATTAGTAAGACACCGCTCATGCTCGCAGTAT
TGATCGCGGTATGAGCAACATACAGAACCGACTGCTGTTTTGCGGCGTCC
TTTTATCCTCCATCTATATTGAAACATACTCTGCGCGGAATTCGGAAGAT
GGTAATGCCGCGGAAGCACGATGGTGAACGTGTTCTTGCGACCGACAGCC
AACGACAGGGCGCAAGCAGGATCCGTCGCTCTCGATCATCCCACGCGCGG
GGGTAAACGTTGTCGTGGGTACCCGGATAGAAATTCCCACCAT
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Coding sequence (CDS) from alignment at P-canaliculata_contig9873:2241..6933+

>mRNA_P-canaliculata_contig9873.23982.1 ID=mRNA_P-canaliculata_contig9873.23982.1|Name=mRNA_P-canaliculata_contig9873.23982.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=3504bp|location=Sequence derived from alignment at P-canaliculata_contig9873:2241..6933+ (Pelvetia canaliculata dioecious)
ATGGGCGACACTAGGGCGTGGTTCGAAGGCGAGCTGAGACGGATGCTGGG
GTTCGACGAGATGGGCGACACTAGGGCGTGGTTCGAAGGCGAGCTGAGAC
GGATGCTGGGGTTCGACGAGGTGGAAGAGATCGCGAGGTTTGCGCTCGAC
AGCTATTCGGCGTCGCAGGCCGTTGAACTCAGGCAGTACCTGGAGCAGTT
CCTCGGTCAATCACATGTGGAAGAGATCGCGAGGTTTGCGCTCGACAGCT
ATTCGGCGTCGCAGGCCGTTGAACTCAGGCAGTACCTGGAGCAGTTCCTC
GGTCAATCACATGAAGTACGAAAACTCTGCGACGAGCTCTCCTCGCGGCG
AAGCGCAGCAGCCCCGTTGTCAGCATCGAAGACGGGTTCGGCAAGAAGAC
AGCATGCTAGCGCGGGCGAGGACTTCTGGGGAGCGGGAGGGAGCTCCGGC
GCAGCTACTAGGGCGGCGACAGCGCCCGGGGGAGGAGTAAGAGGGCAGGA
GCACGAGCGAAAGCCAGCGGCCAAGGGCAGGGCAAAGGGAAAGGCTTACA
AAAAATCCACGGAAGAAGACTTCTGGGGAGGTGGTACGACCGTTGGCACA
ACCTCTGGTGGCCAGTCATCCTCCATGAAGTCGGCCACAAATCGACCTAC
TCCCGCCGCAGCGCCAGCTCCTCGCTCGGCGAGGAACTCCGGGGGCAGCC
AGAAGGGGAGCGCTGGTGGTGGCAGCGGCAAACTCCCAACCAAGCCGGAA
CCAACAGGGGCCTCGTCGAAATCAAGCGCACGCCAAGAACACAGCATGTC
GTCCGCCGCTGCTTCTGCCGGCAAGCTCAGGGGCGCGAGGGCGAAAGGGC
GGGGCGGGAAAGTGGCAGCCGGCGCCCAAACGCCAGGACCTGCGAAGAGT
GTTCCTTCGGCGACTAATGTATCCGAACAGACGAAGAAGACCGCGACGTG
GTCGGGAGTGACTTGCCTGTGCATGGGAAAGAACCATGACGCGATCACAA
ACTGTACTGTGTGCGGGAAGATCGCGTGCGTGGAGGAAGGCGGGTTCGGC
TGCTCATTCTGCGGGTCGGCGCTGCCCGTGACGGGCCGCGAGCCGCGCCG
CTCCGGCGAGAGTAAAAGAGGCGATAGCGAAGGTTCTACGGTTGCAGCGG
TCGAGACAGCCGACCCGACACAGTCCGCTGCGCTGAAGGAGGCGCTCGGA
AGGAAGGACAAACTCCTTTTGTTCGATCGGACGTCGGCGTCGAGGACGCG
CGTACTGGACGACCAGGGAGACTACTTCACGAGCCACAACTGGCTGTCGC
GGGAGGAGCGCGAGGAGGAAGAGGCCAAGGAAAAGGCCCACCGAGATGAA
GCTGCCCAGCGCCGGGGAGCGAGGCGGCAGGTGAAGCTCTCCATCGATAT
CATGGGTCGGAGGGTGATCGAGACTAAAGAGCCGGGGGACGGACAGGCTG
GGGGGCAAGCGCAAGACGAAAACGAACAAGGCGAGCGCTTGGGGGCTGCG
GCGGAAGAGATAGCCCGCGTTGGCGGCGTTGGAGATGATACAGGCGGCGC
ATTTGCCGGCGTGGACCCTCGCAACGGCCCCCGAAAGGCTGATCAAGATC
CAGCCAATCACTGGCCATCTGTAGAAAACACCGGCCTCCGGGGTCGGGCA
AAGGAGGTATACGACGTTATGCGGGCGAATCTGGAGAAACAGGGGCGTAG
GAGACCCGGTGGGAATTCCACCAAGCGAGGCGGTTTCAGGGTGGCAGAGA
AATCGCGCGTTAGCTTGTGGCGCGTTCAGCACGACGTGGATTCGGACGAC
GTCGTTAGGCAGAACCAGGTCGGAGGCTCTAATCGAGGGGTCGGAGTTGG
CCACGAGGAGATCGACTTCGAACGATTCGGGCCCATAGATGAATTGGGGT
GCAATTAGGAAGTACGAAAACTCTGCGACGAGCTCTCCTCGCGGCGAAGC
GCAGCAGCCCCGTTGTCAGCATCGAAGACGGGTTCGGCAAGAAGACAGCA
TGCTAGCGCGGGCGAGGACTTCTGGGGAGCGGGAGGGAGCTCCGGCGCAG
CTACTAGGGCGGCGACAGCGCCCGGGGGAGGAGTAAGAGGGCAGGAGCAC
GAGCGAAAGCCAGCGGCCAAGGGCAGGGCAAAGGGAAAGGCTTACAAAAA
ATCCACGGAAGAAGACTTCTGGGGAGGTGGTACGACCGTTGGCACAACCT
CTGGTGGCCAGTCATCCTCCATGAAGTCGGCCACAAATCGACCTACTCCC
GCCGCAGCGCCAGCTCCTCGCTCGGCGAGGAACTCCGGGGGCAGCCAGAA
GGGGAGCGCTGGTGGTGGCAGCGGCAAACTCCCAACCAAGCCGGAACCAA
CAGGGGCCTCGTCGAAATCAAGCGCACGCCAAGAACACAGCATGTCGTCC
GCCGCTGCTTCTGCCGGCAAGCTCAGGGGCGCGAGGGCGAAAGGGCGGGG
CGGGAAAGTGGCAGCCGGCGCCCAAACGCCAGGACCTGCGAAGAGTGTTC
CTTCGGCGACTAATGTATCCGAACAGACGAAGAAGACCGCGACGTGGTCG
GGAGTGACTTGCCTGTGCATGGGAAAGAACCATGACGCGATCACAAACTG
TACTGTGTGCGGGAAGATCGCGTGCGTGGAGGAAGGCGGGTTCGGCTGCT
CATTCTGCGGGTCGGCGCTGCCCGTGACGGGCCGCGAGCCGCGCCGCTCC
GGCGAGAGTAAAAGAGGCGATAGCGAAGGTTCTACGGTTGCAGCGGTCGA
GACAGCCGACCCGACACAGTCCGCTGCGCTGAAGGAGGCGCTCGGAAGGA
AGGACAAACTCCTTTTGTTCGATCGGACGTCGGCGTCGAGGACGCGCGTA
CTGGACGACCAGGGAGACTACTTCACGAGCCACAACTGGCTGTCGCGGGA
GGAGCGCGAGGAGGAAGAGGCCAAGGAAAAGGCCCACCGAGATGAAGCTG
CCCAGCGCCGGGGAGCGAGGCGGCAGGTGAAGCTCTCCATCGATATCATG
GGTCGGAGGGTGATCGAGACTAAAGAGCCGGGGGACGGACAGGCTGGGGG
GCAAGCGCAAGACGAAAACGAACAAGGCGAGCGCTTGGGGGCTGCGGCGG
AAGAGATAGCCCGCGTTGGCGGCGTTGGAGATGATACAGGCGGCGCATTT
GCCGGCGTGGACCCTCGCAACGGCCCCCGAAAGGCTGATCAAGATCCAGC
CAATCACTGGCCATCTGTAGAAAACACCGGCCTCCGGGGTCGGGCAAAGG
AGGTATACGACGTTATGCGGGCGAATCTGGAGAAACAGGGGCGTAGGAGA
CCCGGTGGGAATTCCACCAAGCGAGGCGGTTTCAGGGTGGCAGAGAAATC
GCGCGTTAGCTTGTGGCGCGTTCAGCACGACGTGGATTCGGACGACGTCG
TTAGGCAGAACCAGGTCGGAGGCTCTAATCGAGGGGTCGGAGTTGGCCAC
GAGGAGATCGACTTCGAACGATTCGGGCCCATAGATGAATTGGGGTGCAA
TTAG
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