mRNA_P-canaliculata_contig9868.23977.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig9868.23977.1 vs. uniprot
Match: D7G614_ECTSI (Proteasome subunit alpha type n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G614_ECTSI) HSP 1 Score: 444 bits (1143), Expect = 4.520e-151 Identity = 230/239 (96.23%), Postives = 234/239 (97.91%), Query Frame = 2 Query: 116 MFQTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGIQTKEGVVLAVEKRLTSPLLEPSSVEKIMEVDTHIGAAMSGLIADARTLVDHARVEAQNHRFTYDEPMRVEALTQAVCDLALSFGEGGGSKTMSRPFGVALLMAGYDDRGAQLFFSDPAGMFVRYKCKAIGSGSEGAQITLQEGYSDSLTLAEAETLAVSTLKQVMEEKINPDNVEVASVTEKGYLVYKPEQLTEVIQRL 832
MF TRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGIQTKEGVVLAVEKRLTSPLLEPSSVEKIMEVD+HIGAAMSGLIADARTLVDHARVEAQNHRFTYDEPMRVEALTQAVCDLALSFGEGGGSKTMSRPFGVALLMAG+DDRGAQLFFSDP+GMFVRYKCKAIGSGSEGAQ TLQEGYSDSLTLAEAE LAVSTLKQVMEEKINPDNVEVASVTEKGY VY PEQLTEV+QRL
Sbjct: 1 MFATRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGIQTKEGVVLAVEKRLTSPLLEPSSVEKIMEVDSHIGAAMSGLIADARTLVDHARVEAQNHRFTYDEPMRVEALTQAVCDLALSFGEGGGSKTMSRPFGVALLMAGFDDRGAQLFFSDPSGMFVRYKCKAIGSGSEGAQSTLQEGYSDSLTLAEAEALAVSTLKQVMEEKINPDNVEVASVTEKGYSVYTPEQLTEVLQRL 239
BLAST of mRNA_P-canaliculata_contig9868.23977.1 vs. uniprot
Match: A0A835Z048_9STRA (Proteasome subunit alpha type n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z048_9STRA) HSP 1 Score: 383 bits (983), Expect = 6.340e-127 Identity = 199/239 (83.26%), Postives = 211/239 (88.28%), Query Frame = 2 Query: 116 MFQTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGIQTKEGVVLAVEKRLTSPLLEPSSVEKIMEVDTHIGAAMSGLIADARTLVDHARVEAQNHRFTYDEPMRVEALTQAVCDLALSFGEGGGSKTMSRPFGVALLMAGYDDRGAQLFFSDPAGMFVRYKCKAIGSGSEGAQITLQEGYSDSLTLAEAETLAVSTLKQVMEEKINPDNVEVASVTEKGYLVYKPEQLTEVIQRL 832
MF TRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGIQTKEGV+LAVEKRLTSPLLEPSSV KIMEVD HI AAMSGLIADARTLVDHARVEAQNH FTYDEPMRVEALTQAVCD+ALSFGE GG K MSRPFGVALL+AG+DD+G QLFFSDP+GMF RYK KAIGSGSEGAQ LQE +S++ TL EAE LAV TLKQVMEEKI+ DNVEVASVT+ GY VY L +I RL
Sbjct: 1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGIQTKEGVILAVEKRLTSPLLEPSSVVKIMEVDKHIAAAMSGLIADARTLVDHARVEAQNHTFTYDEPMRVEALTQAVCDVALSFGEDGGGKKMSRPFGVALLIAGFDDQGPQLFFSDPSGMFTRYKAKAIGSGSEGAQTNLQESFSENFTLLEAEALAVQTLKQVMEEKISKDNVEVASVTKDGYTVYDAAMLQTIIDRL 239
BLAST of mRNA_P-canaliculata_contig9868.23977.1 vs. uniprot
Match: A0A6V1KK02_HETAK (Proteasome subunit alpha type n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KK02_HETAK) HSP 1 Score: 379 bits (973), Expect = 2.110e-125 Identity = 195/240 (81.25%), Postives = 216/240 (90.00%), Query Frame = 2 Query: 116 MFQTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGIQTKEGVVLAVEKRLTSPLLEPSSVEKIMEVDTHIGAAMSGLIADARTLVDHARVEAQNHRFTYDEPMRVEALTQAVCDLALSFGEGGGSKTMSRPFGVALLMAGYDDRGAQLFFSDPAGMFVRYKCKAIGSGSEGAQITLQEGYSDSLTLAEAETLAVSTLKQVMEEKINPDNVEVASVTE-KGYLVYKPEQLTEVIQRL 832
MF TR+EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGI+T EGVVLAVEKRLTSPLLEPSSVEKIME+D+HIGAAMSGLIADARTL+DHARVEAQNHRFTYDEP+R+EALTQA+CDLALSFGEGG K MSRPFGVALLMAG DD+G QLFFS+P+G FV YK KAIG+GSEGAQ TL+E YS+S T+ EAE LAV+ LKQVMEEKIN +NVEVASVTE GY VY +QL+ +I R+
Sbjct: 1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGIKTNEGVVLAVEKRLTSPLLEPSSVEKIMEIDSHIGAAMSGLIADARTLIDHARVEAQNHRFTYDEPVRIEALTQAICDLALSFGEGGKEKKMSRPFGVALLMAGCDDKGPQLFFSEPSGTFVEYKAKAIGAGSEGAQSTLEESYSESFTMEEAENLAVTVLKQVMEEKINSENVEVASVTEANGYQVYTADQLSTIIGRV 240
BLAST of mRNA_P-canaliculata_contig9868.23977.1 vs. uniprot
Match: A0A7S2V165_9STRA (Proteasome subunit alpha type n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V165_9STRA) HSP 1 Score: 371 bits (953), Expect = 2.080e-122 Identity = 186/239 (77.82%), Postives = 213/239 (89.12%), Query Frame = 2 Query: 116 MFQTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGIQTKEGVVLAVEKRLTSPLLEPSSVEKIMEVDTHIGAAMSGLIADARTLVDHARVEAQNHRFTYDEPMRVEALTQAVCDLALSFGEGGGSKTMSRPFGVALLMAGYDDRGAQLFFSDPAGMFVRYKCKAIGSGSEGAQITLQEGYSDSLTLAEAETLAVSTLKQVMEEKINPDNVEVASVTEKGYLVYKPEQLTEVIQRL 832
MF TRSEYDRGVNTFSPEGRLFQVEYA+EAIKLGSTAVGIQTK+G++LAVEKRLTSPL+EPSS+EKI E+D+HIGAAMSGLIADARTLVDHARVEAQNHRFTYDEPMR EALTQA+CD+ALSFGEGG K MSRPFGVALL+AG+D+ G QLFFSDP+G FV YK KAIG+GSEGA+ TL+E YS+S TL EAETLA++ LKQVMEEK+N NVEVA++T G+ +Y E+L +I RL
Sbjct: 1 MFLTRSEYDRGVNTFSPEGRLFQVEYALEAIKLGSTAVGIQTKDGIILAVEKRLTSPLMEPSSMEKIFEIDSHIGAAMSGLIADARTLVDHARVEAQNHRFTYDEPMRPEALTQAICDVALSFGEGGKEKKMSRPFGVALLIAGHDESGPQLFFSDPSGTFVPYKAKAIGAGSEGAKATLEESYSESFTLEEAETLAMTVLKQVMEEKVNAGNVEVAAITSSGFNMYNTEKLEAIIGRL 239
BLAST of mRNA_P-canaliculata_contig9868.23977.1 vs. uniprot
Match: A0A4D9D6B9_9STRA (Proteasome subunit alpha type n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6B9_9STRA) HSP 1 Score: 361 bits (927), Expect = 1.700e-118 Identity = 184/239 (76.99%), Postives = 209/239 (87.45%), Query Frame = 2 Query: 116 MFQTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGIQTKEGVVLAVEKRLTSPLLEPSSVEKIMEVDTHIGAAMSGLIADARTLVDHARVEAQNHRFTYDEPMRVEALTQAVCDLALSFGEGGGSKTMSRPFGVALLMAGYDDRGAQLFFSDPAGMFVRYKCKAIGSGSEGAQITLQEGYSDSLTLAEAETLAVSTLKQVMEEKINPDNVEVASVTEKGYLVYKPEQLTEVIQRL 832
MF TRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVG+ TK GV+LAVEKR++SPLLEP+SVEKIMEVDTHIGAAMSGL+ DARTLVDHARVEAQNHRF+Y+EP+RVEALTQ +CDLAL+F E G K MSRPFGVALL+AGYDD+G QLFFSDP+G + ++K KAIGSGSEGAQ LQE YSDS TL EAE LA+STLKQVMEEKI+ + VEV SVT++G+ Y E LT V+ R+
Sbjct: 1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGVCTKHGVILAVEKRISSPLLEPTSVEKIMEVDTHIGAAMSGLMPDARTLVDHARVEAQNHRFSYNEPIRVEALTQGICDLALNFAEDGDEKKMSRPFGVALLLAGYDDKGPQLFFSDPSGTYAQFKAKAIGSGSEGAQTNLQESYSDSFTLEEAEDLALSTLKQVMEEKISAEYVEVCSVTKEGFKSYGKEALTAVLARI 239
BLAST of mRNA_P-canaliculata_contig9868.23977.1 vs. uniprot
Match: A0A1E7FH86_9STRA (Proteasome subunit alpha type n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FH86_9STRA) HSP 1 Score: 352 bits (902), Expect = 1.240e-114 Identity = 183/243 (75.31%), Postives = 209/243 (86.01%), Query Frame = 2 Query: 116 MFQTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGIQTKEGVVLAVEKRLTSPLLEPSSVEKIMEVDTHIGAAMSGLIADARTLVDHARVEAQNHRFTYDEPMRVEALTQAVCDLALSFGEGG---GSKTMSRPFGVALLMAGYDD-RGAQLFFSDPAGMFVRYKCKAIGSGSEGAQITLQEGYSDSLTLAEAETLAVSTLKQVMEEKINPDNVEVASVTEKGYLVYKPEQLTEVIQRL 832
M+ TRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGIQTKEG VLAVEKRLTSPLL+P SVEKI E+D+HIGAAMSGL+ADA+TLVDHARVEAQNH FTYDEP+ VE LTQAVCDLALSFGEG +K MSRPFGVALL+AG+DD G+QL+FSDP+G FVRYK KAIG+GSEGAQ L+E YSDS+TL EAE LA+STLKQVMEEKI+ +N+EVA T G+ + + + V++RL
Sbjct: 1 MYLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGIQTKEGCVLAVEKRLTSPLLDPESVEKIAEIDSHIGAAMSGLVADAKTLVDHARVEAQNHSFTYDEPIGVEPLTQAVCDLALSFGEGSDGDSAKRMSRPFGVALLLAGWDDLEGSQLYFSDPSGTFVRYKAKAIGAGSEGAQSNLEESYSDSMTLKEAEELALSTLKQVMEEKISTENIEVARATPAGFKIVSHDDVAIVLERL 243
BLAST of mRNA_P-canaliculata_contig9868.23977.1 vs. uniprot
Match: A0A7S3LEV1_9STRA (Proteasome subunit alpha type (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LEV1_9STRA) HSP 1 Score: 348 bits (894), Expect = 1.910e-113 Identity = 184/234 (78.63%), Postives = 206/234 (88.03%), Query Frame = 2 Query: 116 MFQTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGIQTKEGVVLAVEKRLTSPLLEPSSVEKIMEVDTHIGAAMSGLIADARTLVDHARVEAQNHRFTYDEPMRVEALTQAVCDLALSFGEG---GGSKTMSRPFGVALLMAGYDDR-GAQLFFSDPAGMFVRYKCKAIGSGSEGAQITLQEGYSDSLTLAEAETLAVSTLKQVMEEKINPDNVEVASVT-EKGYLVYKP 802
M+ TRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTA+G+QTKEG VLAVEKRLTSPLL+PSSVEKI E+D+HIGAAMSGL+ADARTLVDHARVEAQNH FTYDEP+ VEALTQAVCDLALSFGEG K MSRPFGVALL+AGYD+ G QLFFSDP+G FVR+K KAIG+GSEGAQ L+E YS+S+TL EAE LA+STLKQVMEEKI+ +N+E+A VT EKG+ V P
Sbjct: 12 MYLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLQTKEGCVLAVEKRLTSPLLDPSSVEKIAEIDSHIGAAMSGLVADARTLVDHARVEAQNHTFTYDEPIGVEALTQAVCDLALSFGEGQDGDSKKRMSRPFGVALLLAGYDELDGCQLFFSDPSGTFVRFKAKAIGAGSEGAQSNLEEAYSESMTLQEAENLALSTLKQVMEEKISTENIELARVTPEKGFHVCDP 245
BLAST of mRNA_P-canaliculata_contig9868.23977.1 vs. uniprot
Match: A0A7S3M7A0_9STRA (Proteasome subunit alpha type n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M7A0_9STRA) HSP 1 Score: 347 bits (891), Expect = 5.770e-113 Identity = 183/243 (75.31%), Postives = 206/243 (84.77%), Query Frame = 2 Query: 116 MFQTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGIQTKEGVVLAVEKRLTSPLLEPSSVEKIMEVDTHIGAAMSGLIADARTLVDHARVEAQNHRFTYDEPMRVEALTQAVCDLALSFGEG---GGSKTMSRPFGVALLMAGYDDR-GAQLFFSDPAGMFVRYKCKAIGSGSEGAQITLQEGYSDSLTLAEAETLAVSTLKQVMEEKINPDNVEVASVTEKGYLVYKPEQLTEVIQRL 832
M+ TRSEYDRGVNTFSPEGRLFQVEYAIEA+KLGST VGIQTK+G +LA+EKRLTS LLEPSSVEK+MEVDTHIGAA+SGLI DARTLVDHAR+EAQNHRFT+DEPM VEALTQ+VCDLAL FGEG G + MSRPFGV+LLMAGYD + G LFFSDP+G + ++K KAIG+GSEGAQ TLQ+ Y D +TLAEAE LA LKQVMEEKI+ NVEVASVTEKGY +Y +L VI RL
Sbjct: 4 MYLTRSEYDRGVNTFSPEGRLFQVEYAIEAVKLGSTVVGIQTKQGSILAIEKRLTSTLLEPSSVEKVMEVDTHIGAAVSGLIGDARTLVDHARIEAQNHRFTFDEPMGVEALTQSVCDLALGFGEGRKEGEGQKMSRPFGVSLLMAGYDRKEGPLLFFSDPSGSYFQFKAKAIGAGSEGAQATLQDKYRDDMTLAEAENLAFEILKQVMEEKISNINVEVASVTEKGYHLYTAAELDTVIARL 246
BLAST of mRNA_P-canaliculata_contig9868.23977.1 vs. uniprot
Match: A0A7S3JPG8_9STRA (Proteasome subunit alpha type n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JPG8_9STRA) HSP 1 Score: 345 bits (885), Expect = 7.740e-112 Identity = 178/241 (73.86%), Postives = 206/241 (85.48%), Query Frame = 2 Query: 116 MFQTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGIQTKEGVVLAVEKRLTSPLLEPSSVEKIMEVDTHIGAAMSGLIADARTLVDHARVEAQNHRFTYDEPMRVEALTQAVCDLALSFGEGGGSKTMSRPFGVALLMAGYDD-RGAQLFFSDPAGMFVRYKCKAIGSGSEGAQITLQEGYSDSLTLAEAETLAVSTLKQVMEEKINPDNVEVASVT-EKGYLVYKPEQLTEVIQRL 832
MFQ RSEYDRGVNTFSPEGRLFQVEYAI+A+KLGSTAVGI+T EGVVLAVEKRLTS LLE +SVEKI+EVD+HIG AMSGLIADARTLVDHARVE+QNHRFTY+EPM ALTQ++CDLALSFGE G K MSRPFGVALL+AGYD RG QL+++DP+G F YK KAIGSG EGAQ LQE YSDS++L +AE LA+STLKQVME+K+ DN+++ASVT E G+ +Y EQ+ V+ RL
Sbjct: 1 MFQARSEYDRGVNTFSPEGRLFQVEYAIQAVKLGSTAVGIKTSEGVVLAVEKRLTSSLLESASVEKILEVDSHIGVAMSGLIADARTLVDHARVESQNHRFTYNEPMNTMALTQSICDLALSFGEDGDDKKMSRPFGVALLIAGYDQSRGPQLYYADPSGTFALYKAKAIGSGGEGAQSNLQELYSDSMSLKDAEVLALSTLKQVMEDKLTDDNIDLASVTAENGFQIYNTEQVHHVVNRL 241
BLAST of mRNA_P-canaliculata_contig9868.23977.1 vs. uniprot
Match: A0A7S4KBM8_9STRA (Proteasome subunit alpha type n=9 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S4KBM8_9STRA) HSP 1 Score: 343 bits (879), Expect = 3.290e-111 Identity = 183/244 (75.00%), Postives = 209/244 (85.66%), Query Frame = 2 Query: 116 MFQTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGIQTKEGVVLAVEKRLTSPLLEPSSVEKIMEVDTHIGAAMSGLIADARTLVDHARVEAQNHRFTYDEPMRVEALTQAVCDLALSFGEGG---GSKTMSRPFGVALLMAGYDDR-GAQLFFSDPAGMFVRYKCKAIGSGSEGAQITLQEGYSDSLTLAEAETLAVSTLKQVMEEKINPDNVEVASVT-EKGYLVYKPEQLTEVIQRL 832
M+ TRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVG+QTK G VLAVEKRLTSPLL+P+SVEKI E+D+HIGAAMSGL+ADARTLVDHARVEA NH FTYDEP+ VEALTQAVCDLALSFGEG SK MSRPFGVALL+AG D+ G QLFFSDP+G FV+YK KAIG+GSEGAQ L E YS+ +TL EAE LA++TLKQVMEEKI+ +N+E+A VT EKG+ + E++ EV+ RL
Sbjct: 1 MYLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGLQTKTGCVLAVEKRLTSPLLDPASVEKIAEIDSHIGAAMSGLVADARTLVDHARVEAVNHTFTYDEPIGVEALTQAVCDLALSFGEGSDGSSSKRMSRPFGVALLLAGVDELDGPQLFFSDPSGTFVQYKAKAIGAGSEGAQSNLSESYSEEMTLEEAEELALATLKQVMEEKISTENIELARVTKEKGFHIATVEEVGEVLGRL 244 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9868.23977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9868.23977.1 >prot_P-canaliculata_contig9868.23977.1 ID=prot_P-canaliculata_contig9868.23977.1|Name=mRNA_P-canaliculata_contig9868.23977.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=240bp MFQTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGIQTKEGVVLAVback to top mRNA from alignment at P-canaliculata_contig9868:4462..10445- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig9868.23977.1 ID=mRNA_P-canaliculata_contig9868.23977.1|Name=mRNA_P-canaliculata_contig9868.23977.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=5984bp|location=Sequence derived from alignment at P-canaliculata_contig9868:4462..10445- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9868:4462..10445- >mRNA_P-canaliculata_contig9868.23977.1 ID=mRNA_P-canaliculata_contig9868.23977.1|Name=mRNA_P-canaliculata_contig9868.23977.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1440bp|location=Sequence derived from alignment at P-canaliculata_contig9868:4462..10445- (Pelvetia canaliculata dioecious)back to top |