mRNA_P-canaliculata_contig98619.23969.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig98619.23969.1
Unique NamemRNA_P-canaliculata_contig98619.23969.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot
Match: UPI00167247B0 (shikimate kinase n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI00167247B0)

HSP 1 Score: 175 bits (443), Expect = 6.260e-54
Identity = 87/96 (90.62%), Postives = 90/96 (93.75%), Query Frame = 1 
Query:    1 MPLHIDKPIALVGLMGVGKTTVGRRLAKRLNRGFEDSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLLTEHPPLILATGGGAFIHPATREL 288
            MPL I+KPIALVGLMGVGKTTVGRRLAKRL+R F+DSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLL   PPLILATGGGAFIHP TREL
Sbjct:    1 MPLQIEKPIALVGLMGVGKTTVGRRLAKRLSREFDDSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLLEVQPPLILATGGGAFIHPPTREL 96
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BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot
Match: UPI000412AF15 (shikimate kinase n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI000412AF15)

HSP 1 Score: 131 bits (329), Expect = 8.590e-37
Identity = 69/90 (76.67%), Postives = 77/90 (85.56%), Query Frame = 1 
Query:   19 KPIALVGLMGVGKTTVGRRLAKRLNRGFEDSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLLTEHPPLILATGGGAFIHPATREL 288
            +PIALVGLMGVGKTTVGRRLAK+L R F DSDD IE ASGRTVAGYFRDHGEA+FR GE RVI+RLL +  P+ILATGGGAFI   TR++
Sbjct:    8 RPIALVGLMGVGKTTVGRRLAKKLGRDFYDSDDEIELASGRTVAGYFRDHGEAEFRKGERRVIERLL-DGTPIILATGGGAFIPNETRKI 96
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BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot
Match: A0A8J3CRK1_9PROT (Shikimate kinase n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3CRK1_9PROT)

HSP 1 Score: 131 bits (330), Expect = 1.120e-36
Identity = 66/90 (73.33%), Postives = 77/90 (85.56%), Query Frame = 1 
Query:   19 KPIALVGLMGVGKTTVGRRLAKRLNRGFEDSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLLTEHPPLILATGGGAFIHPATREL 288
            +PIALVGLMGVGKTTVGRRLAK L+R F DSD+ IE+ASGRTVAGYFRDHGEA FR+GE RV++RL+   P ++LATGGGAFIHP T  +
Sbjct:   24 RPIALVGLMGVGKTTVGRRLAKALDRDFYDSDEEIERASGRTVAGYFRDHGEAAFRNGERRVVERLIAL-PDIVLATGGGAFIHPTTHAI 112
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BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot
Match: A0A848V1Y5_9PROT (Shikimate kinase n=1 Tax=Hellea sp. TaxID=2715692 RepID=A0A848V1Y5_9PROT)

HSP 1 Score: 126 bits (317), Expect = 8.580e-35
Identity = 66/90 (73.33%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:   19 KPIALVGLMGVGKTTVGRRLAKRLNRGFEDSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLLTEHPPLILATGGGAFIHPATREL 288
            +PIALVGLMGVGKTTVGRRL++RL   F DSD+ IEQASGRTVAGYFRDHGE DFR GE RVI+R+L +  PL+LATGGGAFI   TR +
Sbjct:   11 RPIALVGLMGVGKTTVGRRLSRRLGMPFYDSDEEIEQASGRTVAGYFRDHGEEDFRAGERRVIERIL-DGRPLVLATGGGAFIPDETRAI 99
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BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot
Match: A0A520XMF7_9ACTN (Shikimate kinase n=2 Tax=Bacteria TaxID=2 RepID=A0A520XMF7_9ACTN)

HSP 1 Score: 124 bits (310), Expect = 6.140e-34
Identity = 65/90 (72.22%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:   19 KPIALVGLMGVGKTTVGRRLAKRLNRGFEDSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLLTEHPPLILATGGGAFIHPATREL 288
            + IALVGLMGVGKTT+GRRLAKRL+  F DSDD IEQASGRTV GYF+D+GE  FRDGE RVI+RLL + P L+L+TGGGAFI  ATR++
Sbjct:    7 RSIALVGLMGVGKTTIGRRLAKRLDLPFYDSDDEIEQASGRTVKGYFKDYGEEAFRDGERRVIERLLGDGP-LVLSTGGGAFIPEATRKI 95
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BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot
Match: A0A420WF20_9PROT (Shikimate kinase n=1 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WF20_9PROT)

HSP 1 Score: 123 bits (308), Expect = 1.770e-33
Identity = 65/95 (68.42%), Postives = 76/95 (80.00%), Query Frame = 1 
Query:   16 DKP-IALVGLMGVGKTTVGRRLAKRLNRGFEDSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLLT---EHPPLILATGGGAFIHPATREL 288
            D P IAL+G+MGVGKTT+GRRLA+RL+R F DSD  IE+ASGRTVAGYFRDHGEA FR+GE RVI RL+    +   +ILATGGGAF H  TRE+
Sbjct:   10 DAPNIALIGMMGVGKTTIGRRLARRLSREFFDSDHEIEKASGRTVAGYFRDHGEAQFREGEKRVINRLVDPDIKKASIILATGGGAFTHEETREI 104
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BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot
Match: UPI00035C4E49 (shikimate kinase n=1 Tax=Robiginitomaculum antarcticum TaxID=437507 RepID=UPI00035C4E49)

HSP 1 Score: 119 bits (299), Expect = 3.440e-32
Identity = 61/93 (65.59%), Postives = 73/93 (78.49%), Query Frame = 1 
Query:   10 HIDKPIALVGLMGVGKTTVGRRLAKRLNRGFEDSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLLTEHPPLILATGGGAFIHPATREL 288
             + + IALVG+MGVGKTT+GRRLAKRLN  F DSD  IE+ASGRT+ GYFRDHG+  FR+GE +VI RL+ E  P+ILATGGGAFI   TR +
Sbjct:    8 QLAQSIALVGMMGVGKTTIGRRLAKRLNMPFYDSDSEIERASGRTIKGYFRDHGQDAFREGERKVISRLI-EGTPIILATGGGAFIPELTRNI 99
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BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot
Match: A0A2G2J3K2_9PROT (Shikimate kinase n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2J3K2_9PROT)

HSP 1 Score: 119 bits (298), Expect = 4.610e-32
Identity = 62/90 (68.89%), Postives = 74/90 (82.22%), Query Frame = 1 
Query:   19 KPIALVGLMGVGKTTVGRRLAKRLNRGFEDSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLLTEHPPLILATGGGAFIHPATREL 288
            + I++VGLMGVGKTT+GRRLAKRL   F DSDD IE+ASGRT+ GYF+D+GEA FR GE RVI+RLL +  PLIL+TGGGAFI   TRE+
Sbjct:   10 RSISIVGLMGVGKTTIGRRLAKRLELPFFDSDDEIEKASGRTIKGYFKDYGEAAFRSGEQRVIERLL-DGSPLILSTGGGAFIPEETREI 98
[Close]
BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot
Match: A0A2U2BS13_9PROT (Shikimate kinase n=1 Tax=Marinicauda salina TaxID=2135793 RepID=A0A2U2BS13_9PROT)

HSP 1 Score: 117 bits (292), Expect = 4.040e-31
Identity = 57/92 (61.96%), Postives = 71/92 (77.17%), Query Frame = 1 
Query:   13 IDKPIALVGLMGVGKTTVGRRLAKRLNRGFEDSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLLTEHPPLILATGGGAFIHPATREL 288
            +++ I LVGLMG GKTTVGRRLA+RL R F+D+D  IE+A+GR+V   F D GE+ FRDGE +VI RLL E PP++LA GGGAF+ P TR L
Sbjct:   10 LERTIVLVGLMGAGKTTVGRRLARRLGRPFKDADAEIERAAGRSVPDIFADFGESAFRDGERKVIARLLEEEPPMVLAVGGGAFVDPDTRRL 101
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BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot
Match: A0A7C5R853_9PROT (Shikimate kinase n=1 Tax=Hellea balneolensis TaxID=287478 RepID=A0A7C5R853_9PROT)

HSP 1 Score: 116 bits (291), Expect = 4.870e-31
Identity = 64/94 (68.09%), Postives = 73/94 (77.66%), Query Frame = 1 
Query:   10 HI-DKPIALVGLMGVGKTTVGRRLAKRLNRGFEDSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLLTEHPPLILATGGGAFIHPATREL 288
            HI  + IALVGLMGVGKTT+GRRLAKRL   F D+DD IE+ASGRTV GYF+D+GE  FR GE+RVI RLL    P++LATGGGAFI   TR L
Sbjct:    7 HIRTQTIALVGLMGVGKTTIGRRLAKRLEMPFYDTDDEIEKASGRTVKGYFKDYGEEAFRAGEYRVIDRLLGG-APMVLATGGGAFIPENTRAL 99
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00167247B06.260e-5490.63shikimate kinase n=1 Tax=Litorimonas cladophorae T... [more]
UPI000412AF158.590e-3776.67shikimate kinase n=1 Tax=Hellea balneolensis TaxID... [more]
A0A8J3CRK1_9PROT1.120e-3673.33Shikimate kinase n=1 Tax=Algimonas arctica TaxID=1... [more]
A0A848V1Y5_9PROT8.580e-3573.33Shikimate kinase n=1 Tax=Hellea sp. TaxID=2715692 ... [more]
A0A520XMF7_9ACTN6.140e-3472.22Shikimate kinase n=2 Tax=Bacteria TaxID=2 RepID=A0... [more]
A0A420WF20_9PROT1.770e-3368.42Shikimate kinase n=1 Tax=Litorimonas taeanensis Ta... [more]
UPI00035C4E493.440e-3265.59shikimate kinase n=1 Tax=Robiginitomaculum antarct... [more]
A0A2G2J3K2_9PROT4.610e-3268.89Shikimate kinase n=1 Tax=Robiginitomaculum sp. Tax... [more]
A0A2U2BS13_9PROT4.040e-3161.96Shikimate kinase n=1 Tax=Marinicauda salina TaxID=... [more]
A0A7C5R853_9PROT4.870e-3168.09Shikimate kinase n=1 Tax=Hellea balneolensis TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98619contigP-canaliculata_contig98619:2..289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score133.3
Seed ortholog evalue6.2e-29
Seed eggNOG ortholog1121948.AUAC01000008_gene792
Preferred namearoK
KEGG rclassRC00002,RC00078,RC00847
KEGG koko:K00891,ko:K13829
KEGG ReactionR02412,R03083
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00022
EggNOG free text desc.Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
EggNOG OGs1MUFJ@1224,2U76C@28211,43XTC@69657,COG0703@1,COG0703@2
EC2.7.1.71,4.2.3.4
COG Functional cat.F
Best tax levelHyphomonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionShikimate Kinase
Ec32 orthologEc-02_005600.1
Exons1
Model size288
Cds size288
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817347.6752934-CDS-P-canaliculata_contig98619:1..2891622817347.6752934-CDS-P-canaliculata_contig98619:1..289Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98619 2..289 -
1693495238.3982074-CDS-P-canaliculata_contig98619:1..2891693495238.3982074-CDS-P-canaliculata_contig98619:1..289Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98619 2..289 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98619.23969.1prot_P-canaliculata_contig98619.23969.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig98619 2..289 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig98619.23969.1

>prot_P-canaliculata_contig98619.23969.1 ID=prot_P-canaliculata_contig98619.23969.1|Name=mRNA_P-canaliculata_contig98619.23969.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=96bp
MPLHIDKPIALVGLMGVGKTTVGRRLAKRLNRGFEDSDDAIEQASGRTVA
GYFRDHGEADFRDGEFRVIKRLLTEHPPLILATGGGAFIHPATREL
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mRNA from alignment at P-canaliculata_contig98619:2..289-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig98619.23969.1 ID=mRNA_P-canaliculata_contig98619.23969.1|Name=mRNA_P-canaliculata_contig98619.23969.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=288bp|location=Sequence derived from alignment at P-canaliculata_contig98619:2..289- (Pelvetia canaliculata dioecious)
ATGCCGCTGCACATTGATAAACCGATTGCCCTCGTCGGCTTGATGGGTGT
CGGCAAGACGACCGTCGGTCGGCGGCTGGCCAAACGGCTCAACCGCGGCT
TTGAGGATAGTGATGACGCCATTGAACAGGCGTCCGGTCGCACGGTCGCG
GGCTATTTCCGGGATCACGGCGAAGCGGATTTTCGCGACGGCGAGTTTCG
GGTGATTAAGCGCCTTCTGACCGAGCATCCGCCGCTCATTCTCGCCACAG
GCGGCGGGGCTTTTATTCATCCGGCAACCCGGGAATTG
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Coding sequence (CDS) from alignment at P-canaliculata_contig98619:2..289-

>mRNA_P-canaliculata_contig98619.23969.1 ID=mRNA_P-canaliculata_contig98619.23969.1|Name=mRNA_P-canaliculata_contig98619.23969.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at P-canaliculata_contig98619:2..289- (Pelvetia canaliculata dioecious)
ATGCCGCTGCACATTGATAAACCGATTGCCCTCGTCGGCTTGATGGGTGT
CGGCAAGACGACCGTCGGTCGGCGGCTGGCCAAACGGCTCAACCGCGGCT
TTGAGGATAGTGATGACGCCATTGAACAGGCGTCCGGTCGCACGGTCGCG
GGCTATTTCCGGGATCACGGCGAAGCGGATTTTCGCGACGGCGAGTTTCG
GGTGATTAAGCGCCTTCTGACCGAGCATCCGCCGCTCATTCTCGCCACAG
GCGGCGGGGCTTTTATTCATCCGGCAACCCGGGAATTGATGCCGCTGCAC
ATTGATAAACCGATTGCCCTCGTCGGCTTGATGGGTGTCGGCAAGACGAC
CGTCGGTCGGCGGCTGGCCAAACGGCTCAACCGCGGCTTTGAGGATAGTG
ATGACGCCATTGAACAGGCGTCCGGTCGCACGGTCGCGGGCTATTTCCGG
GATCACGGCGAAGCGGATTTTCGCGACGGCGAGTTTCGGGTGATTAAGCG
CCTTCTGACCGAGCATCCGCCGCTCATTCTCGCCACAGGCGGCGGGGCTT
TTATTCATCCGGCAACCCGGGAATTG
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