mRNA_P-canaliculata_contig98542.23966.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig98542.23966.1
Unique NamemRNA_P-canaliculata_contig98542.23966.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig98542.23966.1 vs. uniprot
Match: A0A521T1V3_9CHLR (Uncharacterized protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A521T1V3_9CHLR)

HSP 1 Score: 80.9 bits (198), Expect = 1.880e-14
Identity = 67/256 (26.17%), Postives = 117/256 (45.70%), Query Frame = 1
Query:   58 FILFGDPDAPYWFLGLEEGDHPGDGVVIDNFVRHLLVKTKKYKDAGKLSLRSFSPEGGHKFLPKLEDSGVRSGKNVKYQATWGGYIKLLLSAEMHGSGTSWTIEDVKQYQKYNLGELDNSEGLPKSCLMELFPMARKGRKKGQWPYSPLADREGMEFMKTPSSYKDYAEQDRAKLLLSLVKKHQPKYLVCFGGDCKRVLMSQIDEEPKLLKIHQGKREMKVSTVSYGTTKVIFSNHPTSHGISNLYWKNLGAQLAS 825
            F  +G+PDAP WF+GLEE      G  +++  R +L   ++ K       R+F  E    +  +L D   R   N   Q TWG  I+L L+ +      + T+E V+ YQ+  LG  + +E      L+EL+P+   G  K  W Y+  +    + ++   ++Y+ Y  + R + +   +  H+P  +V +    K+   +  D         +  +E+ +       T  + S HP S G+SN Y++ +G  L S
Sbjct:   14 FFGYGNPDAPIWFVGLEESG----GKTLEDAQRRMLTWARRGK-------RTF--EDVADYHRELNDQ-TRFDSNPTIQPTWGKLIRLQLAFQ---GIRNVTVETVRDYQQTILGRENCNE-----LLIELYPLPSPG--KNIWRYNEFSP---LRWLADRAAYQQYLFEYRTQSISKFIGGHRPAAVVFYCKTEKQSWQTIADTH------FEENKELDILVSKKAKTVFVVSKHPVSVGVSNGYFEQIGTYLRS 236          
BLAST of mRNA_P-canaliculata_contig98542.23966.1 vs. uniprot
Match: UPI0019823AB4 (hypothetical protein n=1 Tax=Nostoc sp. UHCC 0702 TaxID=2814655 RepID=UPI0019823AB4)

HSP 1 Score: 76.6 bits (187), Expect = 7.260e-13
Identity = 64/271 (23.62%), Postives = 116/271 (42.80%), Query Frame = 1
Query:   52 ETFILFGDPDAPYWFLGLEEGDHPGDGVVIDNFVRHLLVK-TKKYKDAGKLSLRSFSPEGGHKFLPKLEDSGVRSGKNVKYQATWGGYIKLLLSAEMHGSGTSWTIEDVKQYQKYNLGELDNSEGLPKSCLMELFPMARKGRKKGQWPYSPLADREGMEFMKTPSSYKDYAEQDRAKLLLSLVKKHQPKYLVCFGGDCKRVLMSQIDEEPKLLKIHQGKREMKVSTVSY------------GTTKVIFSNHPTSHGISNLYWKNLGAQLAS 825
            ETF  +G+    YWF+G+EE    GD   +++ +     +  K+  D  +  +     +G   F P+              Q+TW G I+++LS+E      +  +ED++QYQ YNLG  D       +CL+EL P+     K   W ++       + ++   ++Y+ +    R   +   +K+HQPK +V +G               KL +    K   K+  V +              T  + + HP + G++  Y+ N+G  +A+
Sbjct:   17 ETFYGYGNYQGNYWFIGMEEAG--GDFQDVNHRINIWAKRGEKEIDDVAEYHINMGCADG---FQPR-----------AVIQSTWKGLIRIVLSSE---GKENIDLEDIRQYQIYNLGRKDKE-----TCLLELLPLPSPSIK--NWIFNKHTQ---LAYLSDRAAYEKHCLDKRINHIAQKIKEHQPKGVVFYG---------------KLYEYSWRKITKKIMDVDFTLTPEGFLVCRNSRTVFVIAQHPVAFGVTKQYFHNIGRVIAA 243          
BLAST of mRNA_P-canaliculata_contig98542.23966.1 vs. uniprot
Match: A0A355H3A7_9DELT (Uncharacterized protein n=1 Tax=Syntrophaceae bacterium TaxID=2052184 RepID=A0A355H3A7_9DELT)

HSP 1 Score: 74.3 bits (181), Expect = 4.720e-12
Identity = 72/269 (26.77%), Postives = 115/269 (42.75%), Query Frame = 1
Query:    1 MNSELKDITQNDLNSLHETFILFGDPDAPYWFLGLEEGDHPGDGVVIDNFVRHLLVKTKKYKDAGKLSLRSFSPEGGHKFLPKLEDSGVRSGKNVKYQATWGGYIKLLLSAEMHGSGTSWTIEDVKQYQKYNLGELDNSEGLPKSCLMELFPMARKGRKKGQWPYSPLADREGMEFMKTPSSYKDYAEQDRAKLLLSLVKKHQPKYLVCFGGDCKRVLMSQIDEEPKLLKIHQGKREMKVSTVSYGTTKVIFSNHPTSHGISNLYWKNL 807
            MN  L +I  N L      F  +G+ +A +WF+G+EEG          N +  L  +   + + G+  L           +P   +  +   + V+ Q TWG  I++LL A+   +    T E+V+ YQ+Y+LG  D+     ++CLMEL P+         W Y      +G+E   T + Y +     R K L  L+ +H  K ++ +G       M  I  +    K   G    K +++       I  NHP    ISN Y KN+
Sbjct:    1 MNINLNNININTLYEFMHKFYGYGNLNAKFWFIGMEEGG--------GNDIDELHKRISAWNENGQRLLEDVVSYHVRIGMPHFFE--INGNEPVRIQRTWGQLIRILLLAKNENA----TTENVRDYQRYSLGRDDDHS---ETCLMELMPLPSPNI--NNWIYGQF---QGIE---TRAEYFNNISPLRIKKLKKLIDEHPGKIILFYGKSYINYWMRLIGSD---FKARDGFMWCKSNSL------FIVINHPCR--ISNEYCKNV 233          
BLAST of mRNA_P-canaliculata_contig98542.23966.1 vs. uniprot
Match: A0A355H335_9DELT (Uncharacterized protein n=1 Tax=Syntrophaceae bacterium TaxID=2052184 RepID=A0A355H335_9DELT)

HSP 1 Score: 71.6 bits (174), Expect = 4.420e-11
Identity = 74/273 (27.11%), Postives = 116/273 (42.49%), Query Frame = 1
Query:    1 MNSELKDITQNDLNSLHETFILFGDPDAPYWFLGLEEGDHPGDGVVIDNFVRHLLVKTKKYKDAGKLSLRSFSPEGGHKFLPKLEDSGVRSGKNVKYQATWGGYIKLLLSAEMHGSGTSWTIEDVKQYQKYNLGELDNSEGLPKSCLMELFPMARKGRKKGQWPYSPLADREGMEFMKTPSSYKDYAEQDRAKLLLSLVKKHQPKYLVCFGGDCKRVLMSQIDEEPKL----LKIHQGKREMKVSTVSYGTTKVIFSNHPTSHGISNLYWKNL 807
            MN  L +I  N L      F  +G+ +A +WF+G+EEG          N +  L  +   + + GK  L        H  +P   +      K V+ Q TWG  I++LL ++    G + T+E ++ YQ  +LG  D+     ++CLMEL P+         W Y      +G+E   T   Y +     R   L  L+ ++ PK ++ F G       S ID    +    LK+  G    K +++       I  NHP    ISN Y +N+
Sbjct:    1 MNINLNNININTLYDFMHKFYGYGNLNAKFWFIGMEEGG--------GNDIDELHKRISAWNENGKKLLEDVVSYHIHIGMPHFFEKN--GNKKVRIQRTWGQLIRILLLSK----GINATMEHIRAYQTCSLGRADDHS---ETCLMELMPLPSSST--NDWIYGQF---QGIE---TRVKYFENISPHRINKLKELINEN-PKKIILFYGK------SYIDRWRHIIGSDLKVDNGFMWFKKNSL------FIVINHPCR--ISNEYCQNV 233          
BLAST of mRNA_P-canaliculata_contig98542.23966.1 vs. uniprot
Match: A0A1T1ASI7_RHOFE (Uncharacterized protein n=2 Tax=Rhodoferax fermentans TaxID=28066 RepID=A0A1T1ASI7_RHOFE)

HSP 1 Score: 64.3 bits (155), Expect = 1.650e-8
Identity = 53/193 (27.46%), Postives = 93/193 (48.19%), Query Frame = 1
Query:   55 TFILFGDPDAPYWFLGLEEGDHPGDGVVIDNFVRHLLVKTKKYKDAGKLSLRSFSPEGGHKFLPKLEDSGVRSGKNVKYQATWGGYIKLLLSAEMHGSGTSWTIEDVKQYQKYNLGELDNSEGLPKSCLMELFPMARKGRKKGQWPYSPLADREGMEFMKTPSSYKDYAEQDRAKLLLSLVKKHQPKYLVCFG 633
            TF  +G+  APYWF+G+EEG  P       ++   ++ + K ++  G+  +        H  L   E     +G+ VK Q TW   ++ LL A+    G   + E+V+Q Q  N   ++ S+    +CL+EL P+     K   + Y  L +++   F  + S Y+ Y   +R   +  LV  H+P+++V +G
Sbjct:    3 TFYGYGNLQAPYWFIGMEEGCGP-------SWENDVIPRFKIWESRGRKMIDDAREY--HFDLGIREFWEAPTGRQVKVQRTWRRLLETLLCAK----GQEVSEENVRQLQA-NAFAMEGSD----TCLLELLPLPSSSIK--SFDYVRLENQDHAYFA-SRSKYRRYVLANRIPKIRELVLTHRPRHVVLYG 174          
BLAST of mRNA_P-canaliculata_contig98542.23966.1 vs. uniprot
Match: UPI001CCBF01B (hypothetical protein n=1 Tax=Salegentibacter tibetensis TaxID=2873600 RepID=UPI001CCBF01B)

HSP 1 Score: 57.0 bits (136), Expect = 6.710e-6
Identity = 53/207 (25.60%), Postives = 96/207 (46.38%), Query Frame = 1
Query:   37 LNSLHETFILFGDPDAPYWFLGLEE--GDHPGD-GVVIDNFVRH--LLVKTKKYKDAGKLSLRSFSPEGGHKFLPKLEDSGVRSGKNVKYQATWGGYIKLLLSAEMHGSGTSWTIEDVKQYQKYNLGELDNSEGLPKSCLMELFPMARKGRKKGQWP--YSPLADREGMEFMKTPSSYKDYAEQDRAKLLLSLVKKHQPKYLVCFGG 636
            L +   TF  +G+ +A YWF+G+EE  G  P D  + ID++ ++   L+  K++     + L+ F  EG            +R       Q TW G I+L  + E    G   + E ++  QK N G++ +S     + L++LFP+     +   +   Y+   D  G+ ++KT   Y +   + R K L   + KH+P+ ++ +  
Sbjct:    7 LENYINTFFGYGNWNATYWFIGIEENGGYSPEDVNLRIDSWEKYGTELIDCKRHHV--NIGLKRFFTEG------------LR-------QKTWWGLIRLRNTIE----GKEISTETIRSVQKENWGQIKSS-----NLLIDLFPLPSPSVELWNYRNWYTNEWDNLGLTYLKTREKYFEKISKKRIKRLKEKLNKHKPRVVIFYAS 183          
BLAST of mRNA_P-canaliculata_contig98542.23966.1 vs. uniprot
Match: A0A521HYW6_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A521HYW6_9CHLR)

HSP 1 Score: 53.5 bits (127), Expect = 7.560e-5
Identity = 52/194 (26.80%), Postives = 79/194 (40.72%), Query Frame = 1
Query:   58 FILFGDPDAPYWFLGLEEGDHPGDGVVIDNFVRHLLVKTKKYKDAGKLSLRSFSP-EGGHKFLPKLEDSGVRSGKNVKYQATWGGYIKLLLSAEMHGSGTSWTIEDVKQYQKYNLGELDNSEGLPKSCLMELFPMARKGRKKGQWPYSPLADREGMEFMKTPSSYKDYAEQDRAKLLLSLVKKHQP-KYLVCFG 633
            F+ +G+ +AP+WF+G+EE                   +  K +   +L  R F   +  HK L   +    +S    K Q TW     L+L+        +  + D   YQ   LG   +      + L+EL P+  K  K   W           E  K+ S YK      R KLL  L++KHQP K ++C+G
Sbjct:   15 FVGYGNRNAPFWFVGMEE-------------------RGSKKRLRRRLKFRRFEDLKRAHKILGIKDYHWTKS----KLQPTWKRMCWLMLALNHQNFDDNQLVLD---YQAERLGRKKDE-----TFLLELMPLPAKNLK--SWDLH--------ELFKSRSEYKRKVRPKRIKLLNRLLRKHQPEKVVICYG 167          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98542.23966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A521T1V3_9CHLR1.880e-1426.17Uncharacterized protein n=1 Tax=Anaerolineae bacte... [more]
UPI0019823AB47.260e-1323.62hypothetical protein n=1 Tax=Nostoc sp. UHCC 0702 ... [more]
A0A355H3A7_9DELT4.720e-1226.77Uncharacterized protein n=1 Tax=Syntrophaceae bact... [more]
A0A355H335_9DELT4.420e-1127.11Uncharacterized protein n=1 Tax=Syntrophaceae bact... [more]
A0A1T1ASI7_RHOFE1.650e-827.46Uncharacterized protein n=2 Tax=Rhodoferax ferment... [more]
UPI001CCBF01B6.710e-625.60hypothetical protein n=1 Tax=Salegentibacter tibet... [more]
A0A521HYW6_9CHLR7.560e-526.80Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98542contigP-canaliculata_contig98542:68..898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score70.5
Seed ortholog evalue1.4e-09
Seed eggNOG ortholog163908.KB235896_gene64
EggNOG OGs2FBIX@1,343Q5@2
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size831
Cds size831
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817347.2433393-CDS-P-canaliculata_contig98542:67..8981622817347.2433393-CDS-P-canaliculata_contig98542:67..898Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98542 68..898 +
1693495238.112554-CDS-P-canaliculata_contig98542:67..8981693495238.112554-CDS-P-canaliculata_contig98542:67..898Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98542 68..898 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98542.23966.1prot_P-canaliculata_contig98542.23966.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig98542 68..898 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig98542.23966.1

>prot_P-canaliculata_contig98542.23966.1 ID=prot_P-canaliculata_contig98542.23966.1|Name=mRNA_P-canaliculata_contig98542.23966.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=277bp
MNSELKDITQNDLNSLHETFILFGDPDAPYWFLGLEEGDHPGDGVVIDNF
VRHLLVKTKKYKDAGKLSLRSFSPEGGHKFLPKLEDSGVRSGKNVKYQAT
WGGYIKLLLSAEMHGSGTSWTIEDVKQYQKYNLGELDNSEGLPKSCLMEL
FPMARKGRKKGQWPYSPLADREGMEFMKTPSSYKDYAEQDRAKLLLSLVK
KHQPKYLVCFGGDCKRVLMSQIDEEPKLLKIHQGKREMKVSTVSYGTTKV
IFSNHPTSHGISNLYWKNLGAQLASL*
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mRNA from alignment at P-canaliculata_contig98542:68..898+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig98542.23966.1 ID=mRNA_P-canaliculata_contig98542.23966.1|Name=mRNA_P-canaliculata_contig98542.23966.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=831bp|location=Sequence derived from alignment at P-canaliculata_contig98542:68..898+ (Pelvetia canaliculata dioecious)
ATGAATTCTGAGTTAAAAGATATTACTCAAAACGATCTAAACTCATTGCA CGAGACATTTATTTTATTTGGAGATCCAGATGCGCCCTACTGGTTCTTAG GTTTGGAGGAAGGCGATCATCCTGGTGACGGTGTTGTCATAGATAACTTT GTACGTCACTTGCTGGTAAAAACAAAAAAGTATAAGGATGCTGGTAAGCT AAGTTTGAGAAGTTTTTCTCCAGAAGGTGGTCATAAATTTTTGCCAAAAC TAGAGGATTCTGGTGTTCGTTCTGGTAAGAACGTCAAATATCAGGCGACT TGGGGTGGCTATATAAAACTATTATTGTCTGCTGAGATGCATGGTTCGGG AACGAGTTGGACTATTGAGGATGTTAAGCAATATCAAAAATATAATTTGG GAGAATTAGACAACTCAGAAGGGTTGCCAAAGTCCTGCCTTATGGAATTA TTTCCTATGGCAAGGAAGGGTAGAAAAAAGGGGCAATGGCCCTATTCTCC GTTGGCAGATCGTGAAGGGATGGAGTTTATGAAAACACCATCTTCTTATA AAGATTATGCCGAACAAGATAGAGCAAAATTGCTTCTGTCGTTGGTGAAG AAGCATCAACCAAAGTATCTTGTATGCTTCGGTGGAGATTGCAAGAGAGT GTTAATGTCTCAAATAGATGAAGAGCCAAAATTGTTAAAAATTCATCAAG GCAAAAGGGAGATGAAGGTGTCTACAGTGTCTTATGGAACTACGAAGGTG ATATTTTCTAACCATCCAACTTCACATGGTATTTCAAATCTCTATTGGAA AAATCTCGGCGCACAATTGGCGAGTCTTTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig98542:68..898+

>mRNA_P-canaliculata_contig98542.23966.1 ID=mRNA_P-canaliculata_contig98542.23966.1|Name=mRNA_P-canaliculata_contig98542.23966.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1662bp|location=Sequence derived from alignment at P-canaliculata_contig98542:68..898+ (Pelvetia canaliculata dioecious)
ATGAATTCTGAGTTAAAAGATATTACTCAAAACGATCTAAACTCATTGCA
CGAGACATTTATTTTATTTGGAGATCCAGATGCGCCCTACTGGTTCTTAG
GTTTGGAGGAAGGCGATCATCCTGGTGACGGTGTTGTCATAGATAACTTT
GTACGTCACTTGCTGGTAAAAACAAAAAAGTATAAGGATGCTGGTAAGCT
AAGTTTGAGAAGTTTTTCTCCAGAAGGTGGTCATAAATTTTTGCCAAAAC
TAGAGGATTCTGGTGTTCGTTCTGGTAAGAACGTCAAATATCAGGCGACT
TGGGGTGGCTATATAAAACTATTATTGTCTGCTGAGATGCATGGTTCGGG
AACGAGTTGGACTATTGAGGATGTTAAGCAATATCAAAAATATAATTTGG
GAGAATTAGACAACTCAGAAGGGTTGCCAAAGTCCTGCCTTATGGAATTA
TTTCCTATGGCAAGGAAGGGTAGAAAAAAGGGGCAATGGCCCTATTCTCC
GTTGGCAGATCGTGAAGGGATGGAGTTTATGAAAACACCATCTTCTTATA
AAGATTATGCCGAACAAGATAGAGCAAAATTGCTTCTGTCGTTGGTGAAG
AAGCATCAACCAAAGTATCTTGTATGCTTCGGTGGAGATTGCAAGAGAGT
GTTAATGTCTCAAATAGATGAAGAGCCAAAATTGTTAAAAATTCATCAAG
GCAAAAGGGAGATGAAGGTGTCTACAGTGTCTTATGGAACTACGAAGGTG
ATATTTTCTAACCATCCAACTTCACATGGTATTTCAAATCTCTATTGGAA
AAATCTCGGCGCACAATTGGCGAGTCTTTGAATGAATTCTGAGTTAAAAG
ATATTACTCAAAACGATCTAAACTCATTGCACGAGACATTTATTTTATTT
GGAGATCCAGATGCGCCCTACTGGTTCTTAGGTTTGGAGGAAGGCGATCA
TCCTGGTGACGGTGTTGTCATAGATAACTTTGTACGTCACTTGCTGGTAA
AAACAAAAAAGTATAAGGATGCTGGTAAGCTAAGTTTGAGAAGTTTTTCT
CCAGAAGGTGGTCATAAATTTTTGCCAAAACTAGAGGATTCTGGTGTTCG
TTCTGGTAAGAACGTCAAATATCAGGCGACTTGGGGTGGCTATATAAAAC
TATTATTGTCTGCTGAGATGCATGGTTCGGGAACGAGTTGGACTATTGAG
GATGTTAAGCAATATCAAAAATATAATTTGGGAGAATTAGACAACTCAGA
AGGGTTGCCAAAGTCCTGCCTTATGGAATTATTTCCTATGGCAAGGAAGG
GTAGAAAAAAGGGGCAATGGCCCTATTCTCCGTTGGCAGATCGTGAAGGG
ATGGAGTTTATGAAAACACCATCTTCTTATAAAGATTATGCCGAACAAGA
TAGAGCAAAATTGCTTCTGTCGTTGGTGAAGAAGCATCAACCAAAGTATC
TTGTATGCTTCGGTGGAGATTGCAAGAGAGTGTTAATGTCTCAAATAGAT
GAAGAGCCAAAATTGTTAAAAATTCATCAAGGCAAAAGGGAGATGAAGGT
GTCTACAGTGTCTTATGGAACTACGAAGGTGATATTTTCTAACCATCCAA
CTTCACATGGTATTTCAAATCTCTATTGGAAAAATCTCGGCGCACAATTG
GCGAGTCTTTGA
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