mRNA_P-canaliculata_contig9852.23963.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9852.23963.1
Unique NamemRNA_P-canaliculata_contig9852.23963.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig9852.23963.1 vs. uniprot
Match: A0A6H5JMA5_9PHAE (UDENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA5_9PHAE)

HSP 1 Score: 442 bits (1136), Expect = 1.320e-137
Identity = 253/448 (56.47%), Postives = 298/448 (66.52%), Query Frame = 1 
Query:    1 RSLLLKSSPPRLLAPSAE---VLVLLLYPFSWSHVYIPVLPEALLGVLSAPMPFLIGVHRSFIEDTGMDISPYAVEVDLDNDIVNVG-MQAPRIPDLPSRGKAKLLAALAEHAKLSYCRMSSFREEVMQKSDLAFRMALRPCDFIDGEVLIPPPDWDAVREAFLRFFVALFAEYRRFLVYPTKANPSPPRLFNTSDFLDKLDSEARPFAKAMCHTQARDHLFTILAFQNFVDARIQPEEGDLDVRFFDASIVAKKNRSKLHVIKK-DANFLRPETYV-AKTVYALTPDTTGLDMSAPAKTRDRFPHLSAASYTTPRDVPSISNHYKNDDGEGGGGRS-----------------GAGGVFNWGFR---------------RGSSGDYSXXXXXXXXXXXXXXXXXXXXXWKGHDEWAPLSAEATVFAVFLVGFCATIGHDPPRRSKAA 1230
            RS+LLKSS   LL P AE   VL L+LYP SWSHVYIPVLPEALLGVL+APMPFLIGVHRSF+E TGMD++P  V+VDLDND+V +G  +A  +P LP + ++KLLA LAEHA+L +CR  ++R++VMQKSDLAF MA+RPCDF D E+  PPPDWDAVREAFLRFFV   + YRR LVYPTKANP+P RLFN  D+LDKLD ++RPFA+ +C TQA         FQNF+DARIQPE  DLDV FFDA I AK+NRS LHV KK DANFLRP+T+V AKTV+ALTPDTTGLDM+APA++ + FP LS A Y  PRD+PS+SN    D G GG  +                    G  FN  F                 G  G                          G D+W+PL AEATVFAVF+VGFCATIG DP R  + A
Sbjct:  422 RSILLKSSQLSLLTPCAEASIVLTLVLYPLSWSHVYIPVLPEALLGVLAAPMPFLIGVHRSFVEGTGMDVAPDVVQVDLDNDVVEMGGEEAATMPRLPQKRRSKLLAKLAEHAQLGHCRTPAYRQDVMQKSDLAFPMAIRPCDFDDDELDTPPPDWDAVREAFLRFFVTFLSGYRRCLVYPTKANPNPARLFNVDDYLDKLDRDSRPFAEKLCVTQA---------FQNFIDARIQPETYDLDVVFFDACIAAKRNRSMLHVTKKSDANFLRPDTFVKAKTVFALTPDTTGLDMTAPARSHESFPALSPALYPIPRDIPSLSNPTNYDSGGGGPSKGKXXXXXXXXXXXXNAYRNEGSTFNKYFGGSSKKGDRGGDGXAGSGEEGGAGKLSSTSLAGRRGVFARLESSRGGGDDDWSPLCAEATVFAVFIVGFCATIGVDPGRPKRGA 860
[Close]
BLAST of mRNA_P-canaliculata_contig9852.23963.1 vs. uniprot
Match: D7FMH7_ECTSI (UDENN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH7_ECTSI)

HSP 1 Score: 416 bits (1069), Expect = 3.950e-130
Identity = 241/413 (58.35%), Postives = 285/413 (69.01%), Query Frame = 1 
Query:    1 RSLLLKSSPPRLLAPSAEVLVLLLYPFSWSHVYIPVLPEALLGVLSAPMPFLIGVHRSFIEDTGMDISPYAVEVDLDNDIVNVG-MQAPRIPDLPSRGKAKLLAALAEHAKLSYCRMSSFREEVMQKSDLAFRMALRPCDFIDGEVLIPPPDWDAVREAFLRFFVALFAEYRRFLVYPTKANPSPPRLFNTSDFLDKLDSEARPFAKAMCHTQARDHLFTILAFQNFVDARIQPEEGDLDVRFFDASIVAKKNRSKLHVIKK-DANFLRPETYV-AKTVYALTPDTTGLDMSAPAKTRDRFPHLSAASYTTPRDVPSISNHYKNDDGEGGGGRSGAGGVFNWGFRRGSSGDYSXXXXXXXXXXXXXXXXXXXXXWKGHDEWAPLSAEATVFAVFLVGFCATIGHDPPRRSKAA 1230
            RS++LKSS   LL P AEVL L+LYP SWSHVYIPVLPEALLGVL+APMPFLIGVHRSF+E T MD++PY V+VDLDND+V +G  +A  +P LP + ++KLLA LAEHA+L +CR  ++R++VMQKSDLAF MA+RPCD+ D E+  PPPDWDAVREAFLRFFV   + YRR LVYPTKANP+P RLFN  D+LDKLD ++RPFA+AMC TQA         FQNF+DARIQPE  DLDV FFDA I AK+NRS LHV KK DANFLRP+T+V AKTV+ALTPDTTGLDM+APA++ +             R+  S  N Y       GG                      XXXXXX                   D+W+PL AEATVFAVF+VGFCATIG DP R  + A
Sbjct:  227 RSIVLKSSQLSLLTPCAEVLSLVLYPLSWSHVYIPVLPEALLGVLAAPMPFLIGVHRSFVEGTDMDVAPYVVQVDLDNDVVEMGGEEAATMPPLPQKRRSKLLAKLAEHAQLGHCRTPAYRQDVMQKSDLAFSMAIRPCDYDDDELDTPPPDWDAVREAFLRFFVTFLSGYRRCLVYPTKANPNPARLFNVDDYLDKLDRDSRPFAEAMCDTQA---------FQNFIDARIQPETDDLDVVFFDACIAAKRNRSMLHVTKKSDANFLRPDTFVKAKTVFALTPDTTGLDMTAPARSHES------------RNEGSTFNKYF------GGSSKXXXXXXXXXXXXXXXXXXXXXXXXXLAGRRGVFARSGSSRGXXDDDWSPLCAEATVFAVFIVGFCATIGVDPVRPKRGA 612
[Close]
BLAST of mRNA_P-canaliculata_contig9852.23963.1 vs. uniprot
Match: A0A835ZGT0_9STRA (UDENN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGT0_9STRA)

HSP 1 Score: 232 bits (592), Expect = 3.840e-63
Identity = 177/508 (34.84%), Postives = 232/508 (45.67%), Query Frame = 1 
Query:    1 RSLLLKSSPPRLLAPSAEVLVLLLYPFSWSHVYIPVLPEALLGVLSAPMPFLIGVHRSFIEDTGMD-------------------------------------------ISPYAVEVDLDNDIVNVGMQAPRIPDLPSRGKAKLLAALAEH-----------------------------AKLSYCRMSSFREEVM-----------------------QKSDLAFRMALRPCDFID---GEVLIPPPDWDAVREAFLRFFVALFAEYRRFLVYPTKANPSPPRLFNTSDFLDKLDSEARPFAKAMCHTQARDHLFTILAFQNFVDARIQPEEGDLDVRFFDASIVAKKNRSKLHVIKKDANFLRPETYV-AKTVYALTPDTTGLD-MSAPAKTRDRFPHLSAASYTTPRDVPSISNHYKNDDGEGGGGRSGAGGVFNWGFRR---GSSGDYSXXXXXXXXXXXXXXXXXXXXXWKGHDEWAPLSAEATVFAVFLVGFCATIGHDPPR 1215
            R +LL+SS   LL  +AEVL  LLYP  W+HVYIPVLPE L+GVL APMPF++GVH  +  + G+D                                           + P+ V+VDLD + V++G   P    LP++ ++KLL+ALAE                              A L+ C+  S R+ V                         ++DLAF M ++PC   D   G V    PDWD VREAFLR FV+L   Y RFLV PTKA+PSP   F  + F++K D++ RPF  A+  TQA         FQNF+DAR+QP+  DLDVR FD SI AKKNRSKL+VIK+D  FL  + Y    T++ALTPD +GL+ +  P      FP L+      P                            + G RR   G  G+                           D    L+A+  VFAVF+VGF A +G +PPR
Sbjct:  276 RCILLRSSQLFLLTAAAEVLTTLLYPLCWTHVYIPVLPEPLMGVLGAPMPFIVGVHVDWAGERGLDGGXXXXXXXGAVVFSRVDGLAEQLALSHLTLNPRPPGAARARAVPPHVVQVDLDRNTVDLGNNPPET--LPAKRRSKLLSALAESSAVAASREISELVIGNPDCRARARSAAGAAILAICKKHSIRQRVRISAPRAAATDRTWRMCTLCARPPPQADLAFSMVVKPCKLNDDGEGGVHEEAPDWDPVREAFLRLFVSLLRGYHRFLVLPTKADPSPKEPFMRAQFVEKQDADYRPFMGALVCTQA---------FQNFIDARLQPDPDDLDVRLFDESIEAKKNRSKLNVIKRDTGFLSTDEYSQVNTIFALTPDKSGLEGIPRPPPVPGVFPALNEDLADPPXXXXXXXXXXX---------------XXHPGIRRKLGGGEGETGLTGKRRPVGRSRSAMMLHGASSGKDDGGIKLTADEAVFAVFVVGFSAAVGREPPR 757
[Close]
BLAST of mRNA_P-canaliculata_contig9852.23963.1 vs. uniprot
Match: A0A7S2RHS4_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RHS4_9STRA)

HSP 1 Score: 150 bits (380), Expect = 2.140e-35
Identity = 127/378 (33.60%), Postives = 173/378 (45.77%), Query Frame = 1 
Query:    1 RSLLLKSSPPRLLAPSAEVLVLLLYPFSWSHVYIPVLPEALLGVLSAPMPFLIGVHRSFIEDT---GMDISPYAVEVDLDNDIVNVGMQAPRIPDLPSRGKAKLLAALAEHAKLSYCRMSSFREEVMQKSDLAFRMALRPCDF--------------IDGEVLIPPP----------DWDAVREAFLRFFVALFAEYRRFLVYP----------------TKANPSPPRLFNTSDFLDKLDSEARPFAKAMCHTQARDHLFTILAFQNFVDARIQPEEG-DLDVRFFDASIVAKKNRSKLH----VIKKDANFLRPETY-VAKTVYALTPDTTGLDM-------SAPAKTRDRFPHLSAASYTTPRDVPSISNHYKND 966
            R +L++SS   LL    EV+  LLYPF WSHVYIP+LP+A+L VL AP+PF+IGVH   +E     G+   P  V V+LD + V V      I +LP     KLL+ +++ A     R S ++ +++   D A   A++P +                DGE+               +W  VR AF RFFV+L  +Y+ FL+YP                 KAN S    F+   FL +       F   +  TQ          FQ FVD R+ P+   D DV FFD S+ AK NRS L     V+K +  FL    Y + KTV    PD++ +           P K  DRFP L    Y T R V  I    K++
Sbjct:  234 RQILVRSSQRSLLTTFGEVMRALLYPFCWSHVYIPLLPKAMLMVLQAPLPFMIGVHEPILESALAAGLVPQPTTVIVNLDRNEVTVSSLKYAILELPVHDTKKLLSRISQCAPAFRNRQSFWQRDILPFMDSAICHAVKPYEIDDYTVAHVRQVAQSADGEINGRTSVWCTLRNGECNWPMVRTAFFRFFVSLLRDYKDFLIYPIQKPTKKAVSINKEQRAKANGS----FDFVTFLSRRKKSEHAFMSCLVQTQH---------FQCFVDDRLHPDGAHDADVVFFDQSLGAKHNRSFLTRMIPVMKSETRFLNDHQYDITKTVVTHPPDSSDVTRPNEYWMPENPQKGYDRFPRLLTDLYGTIRPVSEIVQRLKSE 598
[Close]
BLAST of mRNA_P-canaliculata_contig9852.23963.1 vs. uniprot
Match: A0A7S1TYQ9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYQ9_9STRA)

HSP 1 Score: 147 bits (372), Expect = 2.620e-34
Identity = 124/406 (30.54%), Postives = 171/406 (42.12%), Query Frame = 1 
Query:    1 RSLLLKSSPPRLLAPSAEVLVLLLYPFSWSHVYIPVLPEALLGVLSAPMPFLIGVHRSFIE----------------------------------------------------DTGMDISPYA--------VEVDLDNDIVNVGMQAPRIPDLPSRGKAKLLAALAEHAKLSYCRMSSFREEVMQKSDLAFRMALRPCD----------------------------------FIDGEVLIP-PPDWDAVREAFLRFFVALFAEYRRFLVYPTKANPSPPRLFNTSDFLDKLDSEARPFAKAMCHTQARDHLFTILAFQNFVDARIQPE-EGDLDVRFFDASIVAKKNRSKLHVIKKDANFLRPETYVAKTVY-----ALTPDTTGLDMSAPAKTRDRFPHLSAAS 915
            + ++L SS   LL+ ++E +  LL+P  WSHVYIP+LP  L GVL APMPFLIG+H   IE                                                    D  +D+   +        V V LD   +++G    ++P LP +   KLL  L  HA L   R +++RE V+   D AF    RPCD                                  F+DGE      P+W+ VREAFLRFFVA+  +YR+F+  PT+  P PP  F   +FL +  ++ +   KA+  TQ          F NFVD R  P+ E  LD+  FD +I AKKNRS   +  +   FL+   Y     Y      + P   G     PA+T    P LS ++
Sbjct:  325 KHVVLISSQQFLLSTASEAVTSLLFPLRWSHVYIPILPAPLFGVLHAPMPFLIGMHTDAIEYGLEQQRIADGGDLPECGAQCAGDEADLINAVRQSTTGNIMRREDSKASHASDGKLDVDAASAQLMPQSVVRVFLDEGRIDLGTT--KLPALPDKRLKKLLRTLETHADLHRRRNAAWRELVLPFYDAAFHHTYRPCDAEQIMRELEQTVPFWRRPFRNRKESEAKKAANDAFLDGEKNTEYTPNWNEVREAFLRFFVAMLRDYRQFMTLPTQDVPMPPLRFRKHEFLREQKNDRQALLKALVDTQN---------FHNFVDERCWPDVESALDIDLFDEAIDAKKNRSNFRLRNRHTPFLQSGRYKEVGTYFVCSPEMAPAGAGAGGPEPAQTAPENPSLSPSA 719
[Close]
BLAST of mRNA_P-canaliculata_contig9852.23963.1 vs. uniprot
Match: B8C810_THAPS (UDENN domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C810_THAPS)

HSP 1 Score: 141 bits (356), Expect = 3.000e-32
Identity = 106/323 (32.82%), Postives = 153/323 (47.37%), Query Frame = 1 
Query:    1 RSLLLKSSPPRLLAPSAEVLVLLLYPFSWSHVYIPVLPEALLGVLSAPMPFLIGVHRSFIEDTGMDISPYAVEVDLDNDIVNVGMQAPRIPDLPSRGKAKLLAALAEHAKLSYCRMSSFREEVMQKS---------------------------DLAFRMALRPCDFI-----DGEVLIPPPDWDAVREAFLRFFVALFAEYRRFLVYPTKANPS-------PPRLFNTSDFLDKLDSEARPFAKAMCHTQARDHLFTILAFQNFVDARIQPEEGDLDVRFFDASIVAKKNRSKLHVIKKDANFLRPETY--VAKTVYALTPD 846
            R +LL SS   LL   AE+L  +L+P  WSH+YIPVLP  L  +L APMP+L G+ R        DIS   V VDLD +++ +G   P +P LP R K KL A+L ++A   + +     +  ++K+                           D AF +A  P         D +V      WDAV+EAFLRF+V++  +YR++L   T  + S           F   +F+ K   + +PF + +  TQ          F +F+  R+  +    DV FFD SI AKKNRSKL + K +  FL         K + A+TP+
Sbjct:  624 RKILLVSSQSSLLTVCAEILCSMLFPMKWSHLYIPVLPRFLTPMLDAPMPYLCGISRENFPYAIGDISDETVVVDLDRNLITMGTHTPDLPSLPHRRKMKLEASLEKYAGNVFWKARGLSKAEVEKTTKSGDKNALEQMFGVADAVWDEKICAMDEAFNLAHAPDSMSLIHEDDSDVNKKQSRWDAVQEAFLRFYVSMLKDYRKYLPTTTTEHSSWRGSVGMEDVQFRVEEFVTKSSPDFQPFLEELVGTQQ---------FDDFITRRMYNKGKAPDVSFFDESISAKKNRSKLKLRKVETPFLNSAVARREMKRIDAVTPN 937
[Close]
BLAST of mRNA_P-canaliculata_contig9852.23963.1 vs. uniprot
Match: B8C8C1_THAPS (UDENN domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C8C1_THAPS)

HSP 1 Score: 140 bits (354), Expect = 3.260e-32
Identity = 115/355 (32.39%), Postives = 160/355 (45.07%), Query Frame = 1 
Query:    1 RSLLLKSSPPRLLAPSAEVLVLLLYPFSWSHVYIPVLPEALLGVLSAPMPFLIGVHRSFIEDTGMDISPYAVEVDLDNDIVNVGMQAPRIPDLPSRGKAKLLAALAEHA---------------------------KLSYCRMSSFREEVMQKSDLAFRMALRPC--------DFIDG-EVLIPPPDWDAVREAFLRFFVALFAEYRRFLVYPTKA---------NPSPPRLFNTSDFLDKLDSEARPFAKAMCHTQARDHLFTILAFQNFVDARIQPEEGDLDVRFFDASIVAKKNRSKLHVIKKDANFLRPETYVAKTVY--ALTPDTTGLDMSAPAKTRDRFPHLSAASYTT 924
            R +LL S    LL   +E+L  LL+P  WSH+YIPVLP +L  +L APMP+L G+ R        D     V VDLD ++++VG   P +P LP + + KL AAL ++                            K    + +S   E ++  D AF +A  P         D  D  E L     WDAV+EAFLRF+VA   EYR+F+    ++         N  P   F +  F+     + +PF K +  TQ          F +F+  RI     + DV FFD SI AKKNRS L + K D  FL   +   +     A+ P + G+  SA +K   +   LS   Y T
Sbjct:  363 RKVLLVSDQLSLLTVCSEILCSLLFPMRWSHLYIPVLPRSLSPMLDAPMPYLCGIRRENFAFAVGDTGDETVVVDLDRNVISVGPNTPDLPPLPHKRRVKLEAALEKNVGHVFWNTRGVPPIKAESILRSGDEKSIKEMKSKANSLWHERIRSVDEAFNLAHAPGSTSILYNDDAKDASEGLAKQSRWDAVQEAFLRFYVAALKEYRKFIPQEARSGQHASWRGQNGKPDFRFQSHQFVLSQRRDFQPFLKGLVSTQQ---------FDDFITKRIYNSSNEADVVFFDKSIDAKKNRSVLKIKKTDTTFLHSASAQRELQQYKAIAPTSDGVPSSASSKVGSKG--LSVYQYPT 706
[Close]
BLAST of mRNA_P-canaliculata_contig9852.23963.1 vs. uniprot
Match: A0A0G4IP83_PLABS (UDENN domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IP83_PLABS)

HSP 1 Score: 141 bits (355), Expect = 3.440e-32
Identity = 114/330 (34.55%), Postives = 146/330 (44.24%), Query Frame = 1 
Query:    1 RSLLLKSSPPRLLAPSAEVLVLLLYPFSWSHVYIPVLPEALLGVLSAPMPFLIGVHRSFIEDTGMDISPYAVEVDLDNDIVNVGMQAPRIPDLPSRGKAKLLAALAEHAKLSY------------------CRMSSFREEVM-QKSDLAFRMALRPCDFIDGEVLIPPPDWDAVREAFLRFFVALFAEYRRFLVYPTKANPSPPRLFNTSDFLDKLDSEARPFAKAMCHTQARDHLFTILAFQNFVDARIQP-------------------------EEGDLDVRFFDASIVAKKNRSKLHVIKKDANFLRPETYVAKTVYALTPDTTGL 858
            R ++L SS   LL P  E  +LL+YPF W HVYIP+LPEALL  L+APMP+LIG H SF+     D+    V V+LD   + V  + P  PD     + KLLAAL   A                      C     ++ V   +SDLAF  A  P        L    D  A+R AF R  V++F  YR F+VYP++A P P  LF + +F+    + A  F      TQA         F  F++ R+ P                         E+ D D+ FFD SIV K NRSK    K+   FL        T  A  PD T L
Sbjct:  324 RKVVLLSSQYSLLTPVVETFLLLMYPFRWQHVYIPLLPEALLDFLNAPMPYLIGTHLSFVRSYA-DLPDSVVIVNLDTQSIVVPGKPPHFPD---HERVKLLAALKSLADYQTTLWERRQPASSGPSPTGSCASVCEQQAVSWTQSDLAFTNAPPPDQVETSRTLRFGMDSKAIRTAFFRVHVSIFKSYRDFIVYPSEAEPFPASLFKSDEFIASFPNTAHRFLHDFLTTQA---------FSRFIEERVVPGCDSGSAISSPNASPTESLGAMWSCEQTDADILFFDESIVEKHNRSKF-AKKRPTPFLDQNLSETTTFVAPCPDQTQL 639
[Close]
BLAST of mRNA_P-canaliculata_contig9852.23963.1 vs. uniprot
Match: A0A6V2ED04_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2ED04_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.420e-30
Identity = 106/312 (33.97%), Postives = 147/312 (47.12%), Query Frame = 1 
Query:    1 RSLLLKSSPPRLLAPSAEVLVLLLYPFSWSHVYIPVLPEALLGVLSAPMPFLIGVHRSFIEDTGMDISPYAVEVDLDNDIVNVGMQAPRIPDLPSRGKAKLLAALAEH----------------AKLSYCRMSSFREEVMQKS-----------DLAFRMALRPCD--------FIDGEVLIPPPDWDAVREAFLRFFVALFAEYRRFLV---YPTKANPSPP-------RLFNTSDFLDKLDSEARPFAKAMCHTQARDHLFTILAFQNFVDARI-QPEEGDLDVRFFDASIVAKKNRSKLHVIKKDANFL 798
            R +LL SS   +L   AE+L  LL+P  WSH+YIP+LP  L  +L APMP+L G+ R  +     DI+   + VDLD +++ +G   P +P +P R +AKL  AL  +                AK+      S  ++V+ K+           D AF +A  P            D +  +    WDAV+EAFLRF+VAL  +YR+FL        AN           R F   +F+     + +PF + +C TQ          F  FV  R+  P E D  V FFD SI AK NRS+L + K D  FL
Sbjct:  587 RKVLLVSSQYSILTVCAEILCSLLFPMQWSHLYIPILPRFLSPMLDAPMPYLCGISRDNLPYAVADINEETIVVDLDQNVITIGSHMPELPPIPYRRRAKLELALEANVGNVFWNARGLTKKKVAKIQRLGNDSAMDDVLAKAEACWGEKLKTFDEAFNLAYTPDSPNLLLNDGMYDDKGKLEQSMWDAVQEAFLRFYVALLKDYRKFLSEYDIGGDANSGSKSKRWGARRDFKADEFIKSQRVDFQPFLEELCITQM---------FDEFVTKRMYNPNEPD--VTFFDQSINAKNNRSRLKLKKVDTTFL 887
[Close]
BLAST of mRNA_P-canaliculata_contig9852.23963.1 vs. uniprot
Match: A0A7S4IB80_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IB80_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.690e-29
Identity = 121/399 (30.33%), Postives = 170/399 (42.61%), Query Frame = 1 
Query:    1 RSLLLKSSPPRLLAPSAEVLVLLLYPFSWSHVYIPVLPEALLGVLSAPMPFLIGVHRSFIEDTGMDISPYAVEVDLDNDIVNVGMQAPRIPDLPSRGKAKLLAALAEHA----------------KLSYCRMSSFREEV--------------MQKSDLAFRMALRPCD-------FIDGEVLIPPPDWDAVREAFLRFFVALFAEYRRFLVYPT--------------------------------KANPSPPR-LFNTSDFLDKLDSEARPFAKAMCHTQARDHLFTILAFQNFVDARIQPEEGDLDVRFFDASIVAKKNRSKLHVIKKDANFLRPETY--VAKTVYALTPDTTGL------DMSAPAKTRDRFPH------LSAASYTTPRDVPSI 945
            R +LL SS   LL   +E+L+ LL+P  WSH+YIPVLP  L  +L APMPFL G+ R  +     DI    + VDLD + +  G     +P +P R + KL A+L +HA                 L   R S   EE+              +   D AF +A  P D        +    L     WDAV+EAFLRF+VA+  +Y+RFL  P                                 ++ PS  R  F++  F      + RPF   +  TQ          F +F+  R+  + G  DV FFD SI AK+NRS+L + K D  FL   +   V  T+ A+ P+  G+      D       R +F +      L ++ Y  PR VP +
Sbjct:  161 RKVLLVSSQYSLLTLCSEILLSLLFPMQWSHLYIPVLPRFLSPMLDAPMPFLCGIGRDHLPHCVCDIGDETIVVDLDRNFITQGPATLDLPPIPHRRRLKLEASLDDHAGEVFWAARGLTRERVRSLQSRRQSGAEEELDAALEEADQTWEVKLGSYDKAFGLAGTPVDTDCGVDDILGASALCVQSQWDAVQEAFLRFYVAVLKDYKRFLKRPDFSAPDSKNGGGGATGRGGDSPGVTGRERATSWRSTPSQRRPTFDSELFASSQRPDFRPFLSELIMTQQ---------FDDFITKRMH-DPGASDVAFFDQSIEAKRNRSRLKLKKTDTLFLVSASAHKVLNTIDAVAPNADGIAAYDADDEDNGNVQRRKFMYTSWPDTLDSSLYCPPRPVPDM 549
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9852.23963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMA5_9PHAE1.320e-13756.47UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FMH7_ECTSI3.950e-13058.35UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835ZGT0_9STRA3.840e-6334.84UDENN domain-containing protein n=1 Tax=Tribonema ... [more]
A0A7S2RHS4_9STRA2.140e-3533.60Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S1TYQ9_9STRA2.620e-3430.54Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
B8C810_THAPS3.000e-3232.82UDENN domain-containing protein n=1 Tax=Thalassios... [more]
B8C8C1_THAPS3.260e-3232.39UDENN domain-containing protein n=1 Tax=Thalassios... [more]
A0A0G4IP83_PLABS3.440e-3234.55UDENN domain-containing protein n=1 Tax=Plasmodiop... [more]
A0A6V2ED04_9STRA1.420e-3033.97Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A7S4IB80_9STRA1.690e-2930.33Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9852contigP-canaliculata_contig9852:6..11260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score425.2
Seed ortholog evalue3.9e-116
Seed eggNOG ortholog2880.D7FMH7
KEGG koko:K20163
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG2127@1,KOG2127@2759
Ec32 ortholog descriptiondDENN domain
Ec32 orthologEc-23_000340.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categorysignal peptide
Exons11
Model size1416
Cds size1416
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817346.8961928-CDS-P-canaliculata_contig9852:5..591622817346.8961928-CDS-P-canaliculata_contig9852:5..59Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9852 6..59 +
1693495237.850477-CDS-P-canaliculata_contig9852:5..591693495237.850477-CDS-P-canaliculata_contig9852:5..59Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9852 6..59 +
1622817346.9101293-CDS-P-canaliculata_contig9852:730..8461622817346.9101293-CDS-P-canaliculata_contig9852:730..846Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9852 731..846 +
1693495237.864406-CDS-P-canaliculata_contig9852:730..8461693495237.864406-CDS-P-canaliculata_contig9852:730..846Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9852 731..846 +
1622817346.9247859-CDS-P-canaliculata_contig9852:1658..18401622817346.9247859-CDS-P-canaliculata_contig9852:1658..1840Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9852 1659..1840 +
1693495237.8731928-CDS-P-canaliculata_contig9852:1658..18401693495237.8731928-CDS-P-canaliculata_contig9852:1658..1840Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9852 1659..1840 +
1622817346.9372437-CDS-P-canaliculata_contig9852:3210..33251622817346.9372437-CDS-P-canaliculata_contig9852:3210..3325Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9852 3211..3325 +
1693495237.8825116-CDS-P-canaliculata_contig9852:3210..33251693495237.8825116-CDS-P-canaliculata_contig9852:3210..3325Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9852 3211..3325 +
1622817346.947664-CDS-P-canaliculata_contig9852:4680..48761622817346.947664-CDS-P-canaliculata_contig9852:4680..4876Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9852 4681..4876 +
1693495237.8919845-CDS-P-canaliculata_contig9852:4680..48761693495237.8919845-CDS-P-canaliculata_contig9852:4680..4876Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9852 4681..4876 +
1622817346.959355-CDS-P-canaliculata_contig9852:5885..60221622817346.959355-CDS-P-canaliculata_contig9852:5885..6022Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9852 5886..6022 +
1693495237.904451-CDS-P-canaliculata_contig9852:5885..60221693495237.904451-CDS-P-canaliculata_contig9852:5885..6022Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9852 5886..6022 +
1622817346.9729557-CDS-P-canaliculata_contig9852:7965..80551622817346.9729557-CDS-P-canaliculata_contig9852:7965..8055Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9852 7966..8055 +
1693495237.9193008-CDS-P-canaliculata_contig9852:7965..80551693495237.9193008-CDS-P-canaliculata_contig9852:7965..8055Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9852 7966..8055 +
1622817346.9837196-CDS-P-canaliculata_contig9852:8522..87841622817346.9837196-CDS-P-canaliculata_contig9852:8522..8784Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9852 8523..8784 +
1693495237.932011-CDS-P-canaliculata_contig9852:8522..87841693495237.932011-CDS-P-canaliculata_contig9852:8522..8784Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9852 8523..8784 +
1622817346.9978118-CDS-P-canaliculata_contig9852:9335..94001622817346.9978118-CDS-P-canaliculata_contig9852:9335..9400Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9852 9336..9400 +
1693495237.9409592-CDS-P-canaliculata_contig9852:9335..94001693495237.9409592-CDS-P-canaliculata_contig9852:9335..9400Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9852 9336..9400 +
1622817347.0109565-CDS-P-canaliculata_contig9852:10133..103001622817347.0109565-CDS-P-canaliculata_contig9852:10133..10300Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9852 10134..10300 +
1693495237.950661-CDS-P-canaliculata_contig9852:10133..103001693495237.950661-CDS-P-canaliculata_contig9852:10133..10300Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9852 10134..10300 +
1622817347.0246527-CDS-P-canaliculata_contig9852:11228..112601622817347.0246527-CDS-P-canaliculata_contig9852:11228..11260Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9852 11229..11260 +
1693495237.9634519-CDS-P-canaliculata_contig9852:11228..112601693495237.9634519-CDS-P-canaliculata_contig9852:11228..11260Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9852 11229..11260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9852.23963.1prot_P-canaliculata_contig9852.23963.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9852 6..11260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9852.23963.1

>prot_P-canaliculata_contig9852.23963.1 ID=prot_P-canaliculata_contig9852.23963.1|Name=mRNA_P-canaliculata_contig9852.23963.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=472bp
RSLLLKSSPPRLLAPSAEVLVLLLYPFSWSHVYIPVLPEALLGVLSAPMP
FLIGVHRSFIEDTGMDISPYAVEVDLDNDIVNVGMQAPRIPDLPSRGKAK
LLAALAEHAKLSYCRMSSFREEVMQKSDLAFRMALRPCDFIDGEVLIPPP
DWDAVREAFLRFFVALFAEYRRFLVYPTKANPSPPRLFNTSDFLDKLDSE
ARPFAKAMCHTQARDHLFTILAFQNFVDARIQPEEGDLDVRFFDASIVAK
KNRSKLHVIKKDANFLRPETYVAKTVYALTPDTTGLDMSAPAKTRDRFPH
LSAASYTTPRDVPSISNHYKNDDGEGGGGRSGAGGVFNWGFRRGSSGDYS
GSGPGAGGTPTGGSKGSHSGSWKGHDEWAPLSAEATVFAVFLVGFCATIG
HDPPRRSKAANGDVPSTTPGDQEHSSPSSEAVASPEHPSVPTTTTTANGA
VDQGSESSWGSGSARAPIPSNA
back to top

mRNA from alignment at P-canaliculata_contig9852:6..11260+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9852.23963.1 ID=mRNA_P-canaliculata_contig9852.23963.1|Name=mRNA_P-canaliculata_contig9852.23963.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=11255bp|location=Sequence derived from alignment at P-canaliculata_contig9852:6..11260+ (Pelvetia canaliculata dioecious)
CGGTCCCTTCTTCTTAAGAGCTCCCCGCCCCGCCTCCTTGCGCCCTCCGC
TGAGGTAAGGGTAACTAACCCCCCCCCCCCCCCCCCTTTGCCTCTGCGCC
ACCCACCCCATCATGGCGATCGACAGCGGTGCTTGAAGTCTTGTGTTGTT
TTGGCGTCTGGTGAAGATATTCAGGCCGCCAAGACGATTTTTTTTTTTGT
CAAGTGTCAACGTTGTATTCTTAAATCATCTTCACCAACCGAGGTATAGG
AAGGCAGGAAACCGCCCCGCTTCTTCATATCTGGGGGATAGACGTACTGG
ATGTTCCGCGGCTGAGGCTCTGGGAAGGGGCGGGGGGGGGTTGAGGGAGG
GAGTTAGTATTCGTGGGAGTGTTTTAATTTGTGCCTTAACGGGAGGTATA
CGGGGGACGTTTTGCTTGCATCGTTACAGAGAGGCGTTTGGTGTATGTCT
TATTACGAGGAAGGAGTTTTGCTTGCGCCTCCATAGGGAGGCGTTTTTCG
CTTGTTCCTGCGAGGGCGAGGAACCGATTTCGTGTCGCCTCCGCCCTCCG
TCACCGCGTTTACAGCTGCTAATGCTCGGGGAATCAAATATCTCGTGCAG
CACTTTTGTGCTCGCCCTATCATCATGAAGGGAGCAGGCGAGTGGGGGGA
GGGATGAATTGTCTCTTCTTCATTTTATCGCACTATGTCCGCTACGCCCC
CCCCTCCCCCCTCCCCGAAAAACAGGTTCTAGTGCTGCTTCTCTACCCCT
TTAGCTGGAGTCACGTGTACATCCCCGTTCTGCCTGAAGCGCTGCTGGGG
GTGCTGTCTGCTCCGATGCCGTTTCTCATCGGAGTGCATCGGTGAGAAGG
AAGGAGGCAAGGACTGAAATTACATGCGCGCATCCCCTTGAAAGTTAGTA
TATTCCTGGTTTGACAATTTCCATGGTTCTCCTCTACAAATTGTACAGAA
CGTTTTTTTTTTTGTGTGTGTAGGTATTTTTTGGGGGGTAAGGCGGGGGC
GAAAGGGCTTATATAATTTTTTGTTTTGTTTTTTATATAGAGCCTCGGGA
TAAAAATGTCGTCGATTCTAAATACAGTACATACGGTACAGTACAATCAT
TTTGTCGAAACACCGCACGTGTTTATACGTTTTCGAGGACTCTTTCGAGA
ACTGTATGAGTGAGCGTTGCAGAAACGAGAGGTTTTGTGTCTCGCTCTCT
GTGAATTAAATTACAATCACGGGAAAAGAAGAGAAAAAAGTAGAATGAGA
TGTACTGTACATTCCTTCCTCCTTCTCTTCTCCGAAAATTGTTTTCTATA
GGGGGGGGAGGTGGTTCCATGTGTTTCTAAGGAAAAACACTTTTGATTTT
TAGTACAGTATGTGATAGTATTTCTCGCCTCGCCCTTGTAGAGCCTATCG
TAGCGTCATGTGCATCTGAAAACAGTAATTTGATGGTAGAACCTTCTGTA
TTATAGTGTATTATAGTGTATTTTAGCGTATGCACTCTAAATATTGACAG
TGTGTACGGCGGAGCATTCACTACGCAGACAGGCTGAACGGCGACATCTC
GTCGAGGACCAAAACGAGCACACACTCATTGTCGCCCTGTCGTGTTAGTG
TGTTGGTGTCTTTAGTCTTGACCGGATTAGATTATCGACTGGACACCCCC
TAGGAGTTTCATCGAGGACACCGGCATGGACATATCCCCATACGCGGTGG
AGGTGGACCTCGACAACGACATCGTGAACGTCGGGATGCAGGCGCCACGT
ATCCCGGACTTGCCTTCAAGGGGGAAGGCGAAGTTGCTCGCGGCGCTGGC
GGAGCACGCAAAGCTCAGCTACTGCAGGATGTCGAGTGCGTACTATTATA
TACTGTAGTACGTAATTTGTTATCGTACAATACAGCGGCGTCTTATATCA
CACTACTATATAACAGTTATCATAAATGGTTGTTGTGATGAATCGTCGAG
GTGAGCCGTTCCCTCATGATTATTATATAAAGTGTGATGATAAGGCGTGA
CCATCGTTTTCCTGTGTCGATCGTAATTTTTAAATCGTTATAGATGTACT
TTTAAATATATTTAGCCATGATAAATACAATCCTCTTTGATAAATCGTTA
CGTAGCAAGATCATGATAATATGTTGCGATGATAGATTGTCACGACAGTT
CGTTCGTTTAAAGAAAAATCTGAACGCGTCTAGGCCTTCTGAGCATCCCC
CAGTCAGAAGGAAATTATCACATATACCTCATTATAACTAACCTTTCAAA
TTATTTTCGTCAAGTGTGATGGATCTCTTATAACAAAAAAGCCGTTATGA
TGAATCGTCATGAGAAGTCTGTACGACTTTCTAAGTTTTTATCACAACGT
TTTTGTTTTTTGTTTTCTCTGCCGATGCGTCAAATCAACTTGCTAATAGC
TCTACTAGGTTACCAATCCCAGCTATAATAAGGTACTGCACCGTTAACAA
TCACGCCTGAGATCAACTTACTACGAGCACCTCTCCTTTTTTTTTATCGT
GGTGCAAGTTCATCACTCTTTTTTTGAGACATAGATCTATACAGTACTGG
TATTAATACTGATAGTCTCAATCCGTAGCTATTATGGTATATTAACTTTA
TTAGTGGCCGATCAATGCCTCGATTTACGGCGAATCGTCATATGGGAAAA
GAAATAAAATCGCTGTTGTTGTAAAGTGGAAGTCCAGTATAGTATATTGG
TGCAGTGTAAGGAATTGTACTGTAGTCATCCGTATTTATTATGATAACGA
CAGGTCTCATTCCTTCCACCTCTTGCAACGGCGACGACGCAAGCCATACC
TTTACAAAACCCTGTACCATCATCGTAGCTCTTTAAGCAATAAGCAGTGT
CAGTCTGCTGTCTGCAACGTGAAAGCTGCTCGACTCTTTTTCTCTATGGA
GTAAAGTGAAAGCATGTGAGGAAGGAGGGAAGCGGTGTCCCGATCCGCTA
CTTTTCCTCTTGCCAGAGAGCACGTTTTGTTTTCCCCAAAACGCCTCATT
TATGCAGAGGCACGAAATTGAGGTAAAACGAAAAGGACAGAAGTAAGCAA
TCAAACAGGCGACAGTAGTAAGGGTCGATCAGAAAACAACAGAAAACAGG
TTGTTGCCGCCGGTGGGCAGCTCTTCAGTCTTCATTCTCCTAATTAAATC
AAATCCGTACGTTCCCTTTTCTAATCTAGTTTATAAAAAAATCGCCCTCT
TCCAGGTTTCCGGGAGGAAGTGATGCAGAAGAGCGATCTGGCCTTCAGGA
TGGCCCTCCGACCCTGCGACTTCATCGACGGGGAGGTGCTCATTCCACCG
CCCGACTGGGACGCTGTCAGGTTTGTGCGGGGGGGGGGGAAGTCTGAATG
TTTCTTTTTTCACATACATTTACGCAAGTGGTTTACCGTGTTTGACTACT
ACTTTCACTGATACACTGTCACACTTTACACGGCTATACTGTTAAACACT
ATAATTGTACACCGTTACACTAATGTACTGCTACATTGTTACGCTGTTAA
CCTGTTACACGGTCACTATTAGCCTGTTACACTTTTAGCTCATACACTTC
TACACTATTATACAGCTACATTATTATATTGTTACACTATTCCACTTTTA
TAGAGCTACACCTTTATATTGTTAAACTGTTCCTGGTACACTGTTAGAGC
TATGCAGCTGCACTAAGATATTGTTACATTATTACACTATTTGCACGGCT
AAACTCTCACACTAGTACAGTGGCACGCTAATACATGGCTGGACTAATCC
ACTATTACCATGTTACACTGTCACACTAATTGTCACGCTAATACATTTTT
ATGCTATATCCTATTACATTATTACACTAATACACTGTTACACTATTACA
CTAATACACTCTTACACTGTTACAAATCGCGTGGCAAAGTAGTGACCAAA
ACGTATCCCTCCAGTTACAACCAAAGTAGTCTGAGAACGCGTAAATACGA
TACTAAATGATGAGCGACATTGTGTGTGATCCATGGACCTTAGCAGTCAC
CATATACTCCAGTTGCGAGACTACAGAGCTGTACAATACTATAAATAGCT
ACGTTTCAGATGTACCTACTGCATAGTTCACTAGATTAATGGATCGATAA
GTTGTGGCACCGTGGTTCTCAGGTTGCAATGGCAGCAACGCTGCACAGGG
TGTGAATCATCCAACGGTGAACAAGAACATCAGTCTTGCATAAACCATAC
AGTACAATACCTTGCGCTGCGGCCACACTTTGTTTTGTACTGTACCTCGT
ATGCAATACTTGATATGCAATAAAGCATGGCCCCTCGTACAAATCAGTAT
CGGGTAGCTCCTTCATACGAATAGAGAGATTCAATGGCGCAGAAGAGAAG
AGAAGAGAAGAAGCGAGACTGACACCATGGTGGAGGATTCACATTATGTG
CTTCAGTTGCGTCGCTGTTCAGTACTGTAGCTATACTGTATGTAGCGTTC
CATCAGTGATAGGTTTGTACTGTATGCGAAGACAACTTAAACGATATTTG
CAGTATCAACAGCATTAGACTAAACGGATGATGTAGTCGAAGTCTATAAG
GGTGAGACAGAGCAACAAAAAGCATCAGGAACAACTGACACTTTGTGCAC
ATAATTCGGCGCCTCGCATTCCGCTTTGAATCTCAATCTCACGCCATCTC
ACGCATGCCGTCGACTGTTGCCCAGGGAGGCGTTCCTAAGGTTCTTCGTG
GCGTTGTTTGCCGAGTACCGACGCTTTCTCGTGTACCCCACGAAGGCGAA
CCCGAGCCCTCCCCGGCTGTTCAACACGAGCGACTTCTTGGACAAGCTGG
ACAGTGAAGCCAGGCCCTTCGCTAAGGCCATGTGCCACACTCAGGCAAGG
GATCATCTATTTACTATCCTCGTCTAAAACCTGGTATGCTGTCTACAACT
ACTAGTGTGACATTTATTACAGTATTACTATTACCATTACTATTATTACT
ATTACTATATTTACTATTACTATTACTATATTTACTATTACTAATATCGT
TAATATTAATATAACTTTGTTATTGTTGTTATTATCATTATTATTATCAT
TGTTAGTATAAGTATTACTATTATTACTTTTATTATTATTATTATTATTA
TTATTTTATTATTACTATTATTATTATTACTAATATTATTGCTATTATTG
TTATTATTACTGTTATTGTTATTACTATTATTATTGATATTATTGTTATT
ATTACTATCATTATTACTATTATTATTATTATTATTATTATATGATTACT
ATTATTATTATTACTATTATTATTATTGTATTATTATCATTGTTGCTATT
ATTACTATTATTATTGCTATTATTGTTATTATTACTATCATTATTATTAT
TATTATTATTATTCTCACTATTATTACCATTATTATTATTATTCTCACTA
TTTTTACTATTATTATTATCATTATTATCATTGTTTCTATTATTACTATT
GTCATTTTGTTATTATTCTTGTCTTTTTTGTTTTTATCAGTCCATTGAGG
GCGCTAGCGATATTTTGATCCCTGCCTTGCCGTTGCGACAGTCACAGTTA
TTTTACCACATCTTGATGCTGCGGGGAGGAGATTAAAACGTGACTTGATG
TTGATGCTGACTTGATCACCCTCCTCTGTGGGAGAGAATTTTCCACGAAA
GCGCAGCAAATTTCTCAATGGACCAATGAACCACAAAGAAAAACAAAATA
AAACGAAGCAACGGCCAGACTATGTACTATAATATACTCCGGCACGGTAC
ACAGCAGAGCTTGCTTCCTGGGTGTCTCGCTCAACACGTCGGCACCTGCT
GGTACTAGTCAAAATGTCTATGTATTGGGTATTGGGTGATGTTTGCGTGC
GTTGGTGCGGGGGGGTACGGGGAGGAGCAGGCATTCCAGAACTTTGTGGA
CGCACGGATACAGCCTGAGGAGGGCGACCTCGACGTTCGTTTCTTCGACG
CCTCTATCGTGGCGAAGAAAAACCGCAGCAAGCTGCACGTGATTAAGAAA
GACGCCAACTTTCTGCGGTGAGCGGCGGTCGGGGTTGTGCTGCAGCGGAA
TAAGTCTTTGAACCCTGTACCGTATACTAATGTTATTATTGTTAATTACT
ATTATTATTACTGTAATTGTTATTATTGTTATTATTACTACTGCTACTAT
TACTAAATTACTGTCACTATTTGTAGCTCTATCTGGATGTCGTGGTAAGT
ACTGTACTAGAGAACTCCTTGCAAGTGCTATAATAGATATGATGACATCT
AGAAAAGGCACTGTAGTGTATTTGCCTTTAATACCTCAACTTAAAAATAA
TAAAACTACTACCTAGACTATTAATACTGTTCAAACAGTTATATTTATCG
TATGTTTTGATGCACGAGATCCTTTGGATACGTTATTCATATGTAGTACA
GTACAGCAGGACAGTACGGCACAGTACCTGGTAAACGCCAAGTTTTACGT
ACTATATAGGGTATCTATATAGGCGCTAAGTTTATGATATCGTTAAATAT
ACATAATGTATATATATATGTATAATCTGTGCCGTTTTCAGTTGTCAGTG
TAAATTGTCTGCTTCTCTTGCGAAACGTAATAAGTACTACTATGGATAAT
GGGACACCAGACTAAAATTTATAGACCTCGGACGCCTCCTTATGGATAAA
ATTTTGGACTCTCTGTTGTCATTTTTTTGTGTGCGTTGATTAAGGTCTAC
GTTCGTAACGTGGATACAGAAAAAAATCGTTCAGCTTCGATAATTATAAT
GCAAAAAAAACAGATAAAAAATAAGAATCCAAGCCGTAATCGGAAAAGTC
CGCGTGCCCCTTTCATACTTAGTTCTATAAGTACGCTGTCGAGCGAAGAC
AGGAGAGGTGTTGGGAGGACGGGGGGGGTATTTGATCCATCCCCGGGGCG
TGTGTTCTATACCGTCACCTGTGGAGTTACGATCCTCCGAAATCCCAAGT
ACCATAACAATGGGGAGGTACTAGTGTGGCGGGTAACAAACGAGTCTACT
CTATAACGCCGGGGCTCGTCGGCTCTCGTGTAGAGTCAAAGGGGGTGGTA
TGCCTCAGCCTGGGAGAGTTTTCTCTTTGCGTTCATACCAAGCATCCGGT
AGCGGTACCGGACATTCCCCGAGAGCCCCTAATTGCAGCGCGCATCTGCA
TACGCATTTTTGCAGTGCTCAAAACGCCCTATGAACCCATCCACAGGAAA
CCCTCAACACACAAAAAGCGCCAGCCATGAATTGGAACCTCGCGGTTAGC
TGGTGTAGGGGGGTCTAGGTTAGCGGTAGGGTCGGGTTGGCAAAGCGGAA
TATAAACACAGACGAAGGGACAAGACCAGCCCACAGGGTACTATCACCAA
GCGCCAGCCATTAATTGGGACCTTGCGGTCAGCTGGGGTAGGGGTGTCTC
GGTTAGCGTTAGCGATAGCGTTAGGGTTGGATTGGCCAACCGAAATTGAA
ACACAGATGAAGAAATTTCGCGAGAAGTTACTCGCCTATTCGTTGGAAGC
CATACCCCCCTACCCCAGCTGATCAATTCATGGCTGGTGCTTGGTCACAA
AGTACCCTGTGGGCTGAATTTGTCCCTTCGCCTGTGTTTATATTCCGGTT
TGCCAACCCGGCCCTACCGCTAACGCTAACCCAGACCCCCTACACCAGCT
GACTGCGAGGTTCCAATTCATGGCTGGTGCTTTTTGTGTGTTGAGGGTTT
CCTGTGGATGGGTTCATAGGGCGTTTTGAGCACTGCAAAAATGCGTATGC
AGATGCGCGCTGCAAAAAGGGGCTCTCACATTCCCCGGGAGTTCGAGCTA
AATGGGCAGGATGTCTACCCCACAACCGATTTGTACGATAATGCTCGAAA
GACGATCCGTCCCCTTTTGTGTAAAGGAAGCAGCACTCTCTTAGCGACGG
CCCACTTACGCCACTCCATCCCCGGAACGCCAACTCGGTGTTCCAAACGC
ACCAAATCAGGCCCGAGACGTACGTGGCGAAGACCGTATACGCCCTCACC
CCGGACACCACGGGCCTCGACATGAGCGCCCCGGCCAAGACTCGCGACAG
GTGGGTGGACGAGGGGACGACGGCAACGGAGCTTGATCGTGCTTGCGTTG
GTTTCCGTTCCGCCACGAATCGTGTGGCGGGTGGCATGTTTCATTACCCC
CCGTCCGTCCGTCCGATCGTCCCGAGAGGCTATCCGCCACGATCGGTTTT
TGGTGGAGGCGTTATTCACGCCCCCATTGATTCTCCTGCTTGGCTTGATG
ACGATTGACTTTCTTTGGTCGATTGCTCTTGCGTCGGCGACGCAGGGCGG
ATAGGCAATCCCCCTTCGGTCGCTCCAAACGTGTCACCGACGGGGATAGG
GGGAAGGAAGTCGTGTCACGTGAAAACGTCCCCGTCTCCAGAGCACGAGC
GGATGGATTTTCCCGACCGATCGTTGCAACCACGGTGACAAAAGCCAAGC
TTTCGATTCACAACCGCCTCCGCTATTATACTAACCTGAACTCTCCCCGA
ACGTCTCACTTCCTCAGGTTTCCACATCTTTCTGCGGCGTCGTATACTAC
CCCACGGGACGTCCCTTCCATATCGAACCATTACAAGAATGACGATGGAG
AGGGAGGCGGGGGGAGAAGCGGCGCGGGCGGCGTTTTCAACTGGGGTTTC
CGCAGAGGAAGCAGTGGAGATTACAGCGGTAGCGGCCCCGGCGCCGGCGG
AACTCCGACCGGCGGCAGCAAGGGTTCCCACTCAGGGTCTTGGAAGGGGC
ACGACGAATGGGCGCCGCTCTCGGCGGAGGTGGGTGCATGTGAGAGGGAG
GGATGGGAGGGGAGGGGAGGCGGTATCCCTCGGTGGGGTTGAATAAGGAT
GTGCCTGAGGATAGGGAATATATGTTGCCCGAGAGGAAGTTGAGGGGGGT
TGGGAGGTATCTTCGGGGAGAGAGGGGAATCAGCGTCCTCGGGAAGGCGT
TGACGGATACTGTCTAGGAGCGGGGGGTATGAGTAGGTATGTCCGCGGAG
GAGGGGTTGACGGACGTCGAAGAGTTTATAACGCTAATTTTTTATGTGTT
CCACAGTTTTTTATTTCAGTTTTTGACACCTACGGCAGGAAGCGTGAAGT
CTCTTTTCCGCGTTCAAACACTTTCCAAGTCAACGTCAACGTTCGCACGC
AGATGAACGCTGGCTAGAAAGCACTTACTTCACAGTCTCCTCTTGAGGTG
CACCGTAGGCACTTAACAACAGGAGTAGACATATTTCCCCCCAGCAGTTA
GACTACTGCCGCACCACTTACACTGCCTCTCCCACCCTCTCCGTTAATCT
GGTCGATGGTCGCTGTGGTGTTCTCCCCAGGCCACGGTCTTCGCCGTTTT
TCTGGTGGGATTCTGCGCTACGATCGGACACGACCCGCCACGCAGGTCAA
CTTGACACGTTTATCTTTTGCCTGCTCCCCACCCCTTTCTCCTTTGGTTG
CTGGATTTTTACCGTTCAATAAATAAACAAGAGAACGAGGCGATTTATGT
GCACACAAAACAACTTTGTCAACACCTACGGCGAGACGATCTGAGGGGGG
GGTGGGCTTGGTTCATTTTTTATTATGTTTTTTGTTGTGAATTTTATCGA
GTATGGAGTTTTGAAAACTTGATAGAAAGGCACACAGAGCCACAAGTATA
CACGTATTACTACGTTGCTGTTTTTTCCCGCGAGATGTTTTGGAGGGGTT
TCCACTTTTTGTTTTGTTTTTTTCGGTTTTTTAGTTGTTTTTTCTGGCTT
TGGGCTTCCAGTCTTTGGCTCTGTTTTTGTTGAGATATCTTAAATAATCT
AAGAGCATCCCCTTAAGTATAGTTCGGAGGAGTTTTGTCGAAACGTTAAG
TTGGTAAAATTGGCTGATTCAGACAAAAATCTCACGTGGGTTTTTTTTTC
GTTGGGTATTAGTTCCCCAACGTTAGGGTAGTATTAGTTAATAATAGTGC
TTTTGTGGTTGTTTTGTTTTTATAGAAAAGTCTTGAAGGCATTTTTTGTT
TTGTTTCGCGATTCGTTTTTATTACTTGGGAAGGTGTCTCGTAATCTATG
TTCTACCTCAAACGCAGTATTGTACCAGTATATCTGTGCACACCTTCCCT
GAATATAACGCGTCTGTTCACCACACAGGTCAAAGGCGGCGAACGGGGAT
GTTCCGTCAACAACCCCAGGGGACCAAGAACACTCGTCCCCGAGTTCGGA
AGCCGTAGCCTCTCCGGAACACCCATCCGTGCCGACAACGACAACGACCG
CCAATGGCGCCGTCGACCAGGGGTCCGAGTCTTCGTGGGGAAGCGGTATG
AGGATGTTGGGTCGGAAACTCGGACAGCACACATACCCTTGACCCTCCGA
GAACATCTAGTTTTTTTTCTTCTATTTAGTACCGCGAGTTCGACTCTTGT
CAAAGCGGGATATTTATTCTGGCGTCCGTAGCGGAAAGCTTTAGTGCCCG
CGTAAGTAAAATTCAACCATTATGATTGGTTGACGAGTTGCAAGAGTGCT
GAACTTGCATCGCGATGAAAAATTGTGAGGCATGGACCGGGGAGAGATAG
GAAGATCTTTCGTGACCACAGGCACGATGGCGACGCTGGGGCCCATCGGC
TACCCGTGGGATCGGGTTGGTTGACGAGAAAAAGTAAAAACAGCCTGGTC
TGGTCTGGTCTGATCTGGCCTGATGCTCGTGGCTCGCCTTTTGAGGACGT
GTCGGGTCGTGCCGTGCCGTGCCGAATCGGGTGATAGATCGCATCCATTT
AATCGCGATCCCTATAGCGGGACGTTGTCTCTGTGCGCAGATCGAGTTGT
CCTGTACCCTGTCTCTCATCTGCCCTCAAACCTTCCGCATACTGCTCTTC
CATGCGAGGCATAAACGGGACGGGGCTGTCTTTCTACGTCCCCCTTCCCT
CCTCTTGCGTAATGATTTTAAGGCCGTTGTCTGATATTTTATTTTACTCT
TGAAACCCTCTGAAATCTACCCCGCCATTATATTTGGTATATAATATTGC
TGCCTCCGCGTCTCGCTCGTCTCATCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNTTTTTTTTTTTTC
TTAAAACCCCCCCATATCCCCCCCCCCCTTTTTTTTGTTTTATAATTTTT
CTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCC
TCAACCCTCTTCAAAAAAAAAAGGATCGGCAAGAGCTCCGATCCCCTCAA
ACGCC
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig9852:6..11260+

>mRNA_P-canaliculata_contig9852.23963.1 ID=mRNA_P-canaliculata_contig9852.23963.1|Name=mRNA_P-canaliculata_contig9852.23963.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2832bp|location=Sequence derived from alignment at P-canaliculata_contig9852:6..11260+ (Pelvetia canaliculata dioecious)
CGGTCCCTTCTTCTTAAGAGCTCCCCGCCCCGCCTCCTTGCGCCCTCCGC
TGAGCGGTCCCTTCTTCTTAAGAGCTCCCCGCCCCGCCTCCTTGCGCCCT
CCGCTGAGGTTCTAGTGCTGCTTCTCTACCCCTTTAGCTGGAGTCACGTG
TACATCCCCGTTCTGCCTGAAGCGCTGCTGGGGGTGCTGTCTGCTCCGAT
GCCGTTTCTCATCGGAGTGCATCGGTTCTAGTGCTGCTTCTCTACCCCTT
TAGCTGGAGTCACGTGTACATCCCCGTTCTGCCTGAAGCGCTGCTGGGGG
TGCTGTCTGCTCCGATGCCGTTTCTCATCGGAGTGCATCGGAGTTTCATC
GAGGACACCGGCATGGACATATCCCCATACGCGGTGGAGGTGGACCTCGA
CAACGACATCGTGAACGTCGGGATGCAGGCGCCACGTATCCCGGACTTGC
CTTCAAGGGGGAAGGCGAAGTTGCTCGCGGCGCTGGCGGAGCACGCAAAG
CTCAGCTACTGCAGGATGTCGAGAGTTTCATCGAGGACACCGGCATGGAC
ATATCCCCATACGCGGTGGAGGTGGACCTCGACAACGACATCGTGAACGT
CGGGATGCAGGCGCCACGTATCCCGGACTTGCCTTCAAGGGGGAAGGCGA
AGTTGCTCGCGGCGCTGGCGGAGCACGCAAAGCTCAGCTACTGCAGGATG
TCGAGTTTCCGGGAGGAAGTGATGCAGAAGAGCGATCTGGCCTTCAGGAT
GGCCCTCCGACCCTGCGACTTCATCGACGGGGAGGTGCTCATTCCACCGC
CCGACTGGGACGCTGTCAGGTTTCCGGGAGGAAGTGATGCAGAAGAGCGA
TCTGGCCTTCAGGATGGCCCTCCGACCCTGCGACTTCATCGACGGGGAGG
TGCTCATTCCACCGCCCGACTGGGACGCTGTCAGGGAGGCGTTCCTAAGG
TTCTTCGTGGCGTTGTTTGCCGAGTACCGACGCTTTCTCGTGTACCCCAC
GAAGGCGAACCCGAGCCCTCCCCGGCTGTTCAACACGAGCGACTTCTTGG
ACAAGCTGGACAGTGAAGCCAGGCCCTTCGCTAAGGCCATGTGCCACACT
CAGGCAAGGGATCATCTATTTACTATCCTCGGAGGCGTTCCTAAGGTTCT
TCGTGGCGTTGTTTGCCGAGTACCGACGCTTTCTCGTGTACCCCACGAAG
GCGAACCCGAGCCCTCCCCGGCTGTTCAACACGAGCGACTTCTTGGACAA
GCTGGACAGTGAAGCCAGGCCCTTCGCTAAGGCCATGTGCCACACTCAGG
CAAGGGATCATCTATTTACTATCCTCGCATTCCAGAACTTTGTGGACGCA
CGGATACAGCCTGAGGAGGGCGACCTCGACGTTCGTTTCTTCGACGCCTC
TATCGTGGCGAAGAAAAACCGCAGCAAGCTGCACGTGATTAAGAAAGACG
CCAACTTTCTGCGGCATTCCAGAACTTTGTGGACGCACGGATACAGCCTG
AGGAGGGCGACCTCGACGTTCGTTTCTTCGACGCCTCTATCGTGGCGAAG
AAAAACCGCAGCAAGCTGCACGTGATTAAGAAAGACGCCAACTTTCTGCG
GCCCGAGACGTACGTGGCGAAGACCGTATACGCCCTCACCCCGGACACCA
CGGGCCTCGACATGAGCGCCCCGGCCAAGACTCGCGACAGGCCCGAGACG
TACGTGGCGAAGACCGTATACGCCCTCACCCCGGACACCACGGGCCTCGA
CATGAGCGCCCCGGCCAAGACTCGCGACAGGTTTCCACATCTTTCTGCGG
CGTCGTATACTACCCCACGGGACGTCCCTTCCATATCGAACCATTACAAG
AATGACGATGGAGAGGGAGGCGGGGGGAGAAGCGGCGCGGGCGGCGTTTT
CAACTGGGGTTTCCGCAGAGGAAGCAGTGGAGATTACAGCGGTAGCGGCC
CCGGCGCCGGCGGAACTCCGACCGGCGGCAGCAAGGGTTCCCACTCAGGG
TCTTGGAAGGGGCACGACGAATGGGCGCCGCTCTCGGCGGAGGTTTCCAC
ATCTTTCTGCGGCGTCGTATACTACCCCACGGGACGTCCCTTCCATATCG
AACCATTACAAGAATGACGATGGAGAGGGAGGCGGGGGGAGAAGCGGCGC
GGGCGGCGTTTTCAACTGGGGTTTCCGCAGAGGAAGCAGTGGAGATTACA
GCGGTAGCGGCCCCGGCGCCGGCGGAACTCCGACCGGCGGCAGCAAGGGT
TCCCACTCAGGGTCTTGGAAGGGGCACGACGAATGGGCGCCGCTCTCGGC
GGAGGCCACGGTCTTCGCCGTTTTTCTGGTGGGATTCTGCGCTACGATCG
GACACGACCCGCCACGCAGGCCACGGTCTTCGCCGTTTTTCTGGTGGGAT
TCTGCGCTACGATCGGACACGACCCGCCACGCAGGTCAAAGGCGGCGAAC
GGGGATGTTCCGTCAACAACCCCAGGGGACCAAGAACACTCGTCCCCGAG
TTCGGAAGCCGTAGCCTCTCCGGAACACCCATCCGTGCCGACAACGACAA
CGACCGCCAATGGCGCCGTCGACCAGGGGTCCGAGTCTTCGTGGGGAAGC
GGTCAAAGGCGGCGAACGGGGATGTTCCGTCAACAACCCCAGGGGACCAA
GAACACTCGTCCCCGAGTTCGGAAGCCGTAGCCTCTCCGGAACACCCATC
CGTGCCGACAACGACAACGACCGCCAATGGCGCCGTCGACCAGGGGTCCG
AGTCTTCGTGGGGAAGCGGATCGGCAAGAGCTCCGATCCCCTCAAACGCC
GATCGGCAAGAGCTCCGATCCCCTCAAACGCC
back to top