mRNA_P-canaliculata_contig98514.23962.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig98514.23962.1
Unique NamemRNA_P-canaliculata_contig98514.23962.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98514.23962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98514contigP-canaliculata_contig98514:433..1009 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size290
Cds size165
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98514.23962.1prot_P-canaliculata_contig98514.23962.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig98514 556..1009 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817346.8395405-UTR-P-canaliculata_contig98514:432..5551622817346.8395405-UTR-P-canaliculata_contig98514:432..555Pelvetia canaliculata dioeciousUTRP-canaliculata_contig98514 433..555 +
1693495237.8133187-UTR-P-canaliculata_contig98514:432..5551693495237.8133187-UTR-P-canaliculata_contig98514:432..555Pelvetia canaliculata dioeciousUTRP-canaliculata_contig98514 433..555 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817346.852311-CDS-P-canaliculata_contig98514:555..6031622817346.852311-CDS-P-canaliculata_contig98514:555..603Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98514 556..603 +
1693495237.8273818-CDS-P-canaliculata_contig98514:555..6031693495237.8273818-CDS-P-canaliculata_contig98514:555..603Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98514 556..603 +
1622817346.8642898-CDS-P-canaliculata_contig98514:892..10091622817346.8642898-CDS-P-canaliculata_contig98514:892..1009Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98514 893..1009 +
1693495237.8383594-CDS-P-canaliculata_contig98514:892..10091693495237.8383594-CDS-P-canaliculata_contig98514:892..1009Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98514 893..1009 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig98514.23962.1

>prot_P-canaliculata_contig98514.23962.1 ID=prot_P-canaliculata_contig98514.23962.1|Name=mRNA_P-canaliculata_contig98514.23962.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=55bp
MQDFAHSTNFLQRTEEGGCLKGLDWIQAEPMHAHGILAQVATVFDPHATC
AMKGA
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mRNA from alignment at P-canaliculata_contig98514:433..1009+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig98514.23962.1 ID=mRNA_P-canaliculata_contig98514.23962.1|Name=mRNA_P-canaliculata_contig98514.23962.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=577bp|location=Sequence derived from alignment at P-canaliculata_contig98514:433..1009+ (Pelvetia canaliculata dioecious)
GTTGAAATCGCCGAGCTAACTAAAGGAGTATTGAAAAACGACAATCTCAT
CGTAATTTCGGTGAAGGATCTTTCGCGTCTTCCGGACTTCGACTGACTGT
AATAGTTGATCGTCGAGCCATCAATGCAAGATTTTGCCCACTCTACAAAC
TTTCTGCAAAGGACGGAGGAGGTGAGAGGGGTACACCTCATTTGAAACTT
CTTTTAATAAAACCTTCCGACCACATCCACAAAAACCTAGTTTGGGTGAA
GACCAGGGACACAATGCGCCGCGGGGATGCGAAAGCCTGCACCAAAGTAG
ATGCGCCAACACTTACTTGTGTTGAGCACCGTAAGAGTGAGAGACGTCCA
TGAAGCTTCAACGCACTTGCAGCACCATTTCATCATCCGCGTGCAACGAG
TTTTTGTCCTTACAGTCTATTTTCCCACCTAAACGTTTTGACGATTTCCC
CCCGTGACAGGGTGGATGCTTAAAAGGTTTGGACTGGATACAAGCTGAAC
CAATGCATGCTCATGGCATTCTGGCGCAAGTGGCCACGGTCTTCGATCCG
CATGCGACTTGTGCCATGAAAGGCGCA
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Coding sequence (CDS) from alignment at P-canaliculata_contig98514:433..1009+

>mRNA_P-canaliculata_contig98514.23962.1 ID=mRNA_P-canaliculata_contig98514.23962.1|Name=mRNA_P-canaliculata_contig98514.23962.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at P-canaliculata_contig98514:433..1009+ (Pelvetia canaliculata dioecious)
ATGCAAGATTTTGCCCACTCTACAAACTTTCTGCAAAGGACGGAGGAGAT
GCAAGATTTTGCCCACTCTACAAACTTTCTGCAAAGGACGGAGGAGGGTG
GATGCTTAAAAGGTTTGGACTGGATACAAGCTGAACCAATGCATGCTCAT
GGCATTCTGGCGCAAGTGGCCACGGTCTTCGATCCGCATGCGACTTGTGC
CATGAAAGGCGCAGGTGGATGCTTAAAAGGTTTGGACTGGATACAAGCTG
AACCAATGCATGCTCATGGCATTCTGGCGCAAGTGGCCACGGTCTTCGAT
CCGCATGCGACTTGTGCCATGAAAGGCGCA
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