mRNA_P-canaliculata_contig985.23960.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig985.23960.1
Unique NamemRNA_P-canaliculata_contig985.23960.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig985.23960.1 vs. uniprot
Match: D8LNE9_ECTSI (Ferredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNE9_ECTSI)

HSP 1 Score: 395 bits (1014), Expect = 9.700e-127
Identity = 207/331 (62.54%), Postives = 251/331 (75.83%), Query Frame = 1 
Query:  229 LFLLGSLRGGSSFLSPFAPIARKASLLRKT------NAEASDVDSMTPAQEKAPSDSPPAGLAMEEEESDSGMAKSPAGLTLEGVYRKLKLETQGLDDGIVGLESKDTDYGVEIVKSKLIRKPTLGIQLEEVARGGDGRGLVLVAGVEPRGNAEASGQIFVGDTLCWVGVEPTRMTRVEALDWDLTVSALSSLADVREITVVCKRLVKRKTINVKFELPDGDKTYDIKTGSNLRGEMIRLDVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEIQEGAELLTPADREEDMLISKGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQTEWREQ 1203
            L L   LR G+SFL P   I R +    ++       A  +D D+   A      +      A  E+E D G+A+SP+GLTL+GVY++L LETQ   DG+VGLESKDTDY +E+VK ++ RKP+LG+QLEEVARGGDGRGLVLVAG+EP GNAEASG+I VGDTLC  G+E   M+RVEALDWD TVS L S A+  EI +V KRLVKR++INV+FELP G + ++IK GSNLRGEMIRLDVPVYDP+T R+DQPYATGNCAGEG CGTCFVE+Q+GA+LLT  D+EE ML+S+GNLP+RWRLSCK IVG+EN  GTVR+KAVPQ EWR Q
Sbjct:   11 LLLALQLRNGASFLLPSPAITRCSGFASRSASCGVMRASEADGDAEETASLNVEDE------AKVEDEGDDGLARSPSGLTLDGVYKRLTLETQSRADGVVGLESKDTDYAIEVVKVQMQRKPSLGMQLEEVARGGDGRGLVLVAGLEPGGNAEASGKICVGDTLCSAGIEGD-MSRVEALDWDQTVSVLGSFAEESEIVLVIKRLVKRESINVQFELPSGSRDHEIKAGSNLRGEMIRLDVPVYDPRTKRFDQPYATGNCAGEGTCGTCFVEVQQGADLLTSPDQEELMLLSRGNLPVRWRLSCKVIVGKENKAGTVRLKAVPQAEWRSQ 334
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BLAST of mRNA_P-canaliculata_contig985.23960.1 vs. uniprot
Match: A0A836CRA8_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRA8_9STRA)

HSP 1 Score: 248 bits (632), Expect = 1.090e-71
Identity = 136/262 (51.91%), Postives = 173/262 (66.03%), Query Frame = 1 
Query:  445 GLTLEGVYRKLKLETQGLDDGIVGLESKDTDYGVEIVKSKLIRKPTLGIQLEEVARGGDGRGLVLVAGVEPRGNAEASGQIFVGDTLCWVGVEPTR-MTRVEALDWDLTVSALSSLADVREITVVCKRLVKRKTINVKFELPD-----------GDKTYDIKTGSNLRGEMIRLDVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEIQEGAELLTPADREEDMLISKGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQTEW 1194
            G++LEG+Y++LK+E   LD+GI+GLES+D  +G+EIV                       RGLVL+  V   GNA  SG I  GDTL +VG E  R MTRVE  D+D TV+AL   AD+ EIT+V KRLV+RKT+ V FE P            G +   +  GSNLR EMIR D+PVYD KT R+DQPYATGNC GEGICGTCFVE+QEGAELL+P D  E+M++   NLP RWRLSC+T+VG +N  G VR++++PQ+ +
Sbjct:   41 GVSLEGIYKRLKIEILDLDEGIIGLESRDPAFGIEIV-----------------------RGLVLIGDVG--GNAAESGLINTGDTLTYVGNEAARDMTRVEGQDYDTTVAALGKYADLAEITLVLKRLVQRKTLEVTFETPTAYAEDGTAVEWGGQGVQMLAGSNLRSEMIRRDIPVYDAKTRRFDQPYATGNCGGEGICGTCFVEVQEGAELLSPPDGLENMVMR--NLPRRWRLSCRTVVGGKNEAGQVRLRSIPQSAY 275
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BLAST of mRNA_P-canaliculata_contig985.23960.1 vs. uniprot
Match: A0A7S4DIM7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DIM7_HETAK)

HSP 1 Score: 241 bits (614), Expect = 9.740e-69
Identity = 127/262 (48.47%), Postives = 172/262 (65.65%), Query Frame = 1 
Query:  409 EESDSGMAKSPAGLTLEGVYRKLKLETQGLDDGIVGLESKDTDYGVEIVKSKLIRKPTLGIQLEEVARGGDGRGLVLVAGVEPRGNAEASGQIFVGDTLCWVGVEPTRMTRVEALDWDLTVSALSSLADVREITVVCKRLVKRKTINVKFELPDGDKT-YDIKTGSNLRGEMIRLDVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEIQEGAELLTPADREEDMLISKGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQTE 1191
            E ++ G+ ++  GLTLE +    K+    LD+G+ GL+++D +YG+EI K+++ R+  LG+ L E+  G DGRGLVLV  V   GNA  +GQ  VGD L WVG EP  MTRVE LD+D T++AL   AD   +T+V KRLV+R+ + V    PDG +   ++  GS LRGEM+R  + VYDP   R+DQPY TGNC GEG+CGTC V + EG ELL+  DR E M++ K   P R+RLSC+TIVG  N  G V +K++P  E
Sbjct:   54 EGAEDGVTRNADGLTLEEIAGLFKMSVFDLDEGLYGLDTRDVNYGIEIAKARVSREGGLGLGLSEMMAGRDGRGLVLVEDVAEGGNAATTGQFRVGDALSWVGEEPGDMTRVEGLDFDGTLAALGKYADREAVTLVAKRLVRRQPLEVTLIQPDGSEAKLEMLAGSVLRGEMLRQGLQVYDPSQKRFDQPYVTGNCGGEGLCGTCLVAVLEGKELLSLPDRVEAMVLEKR--PARYRLSCRTIVGVTNQPGKVVLKSMPTLE 313
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BLAST of mRNA_P-canaliculata_contig985.23960.1 vs. uniprot
Match: A0A4D9CWU2_9STRA (PDZ domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWU2_9STRA)

HSP 1 Score: 209 bits (533), Expect = 9.620e-58
Identity = 122/275 (44.36%), Postives = 159/275 (57.82%), Query Frame = 1 
Query:  415 SDSGMAKSPAGLTLEGVYRKLKLETQGLDDGIVGLESKDTDYGVEIVKSKL-IRKPTLGIQLEEVARGGDGRGLVLVAGVEPRGNAEAS----GQIFVGDTLCWVGVEPTRMTRVEALDWDLTVSALSSLADVRE--ITVVCKRLVKRKTINVKFELPDGD-----------KTYDIKTGSNLRGEMIRLDVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEIQEGAELLTPADREEDMLISKGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQ 1185
            S++  +  P  LTLE +  K+K E   LD G  GLESKD  Y VEI K  + + +  +G+ LEE+ RG DGRG VLV+ + P GNA  +    G+I VGD +C++G EP  M R E LD++ T+ AL    +     IT+V KRLV R +++V      G            +T  +  GS LR E++R  +PVY   TLR+DQPY TGNC GEGICGTC V++ EG ELL   D  E M+  K      WRLSC+ IVG  N  GTVR K +PQ
Sbjct:    4 SETTNSNVPPPLTLEEISNKIKFEITDLDAGAYGLESKDVAYAVEIAKVDIPLGEGGIGLGLEELRRGQDGRGCVLVSSLPPEGNAAQAAGDDGKIRVGDMICYLGQEPRGMVRTEGLDFEQTMGALRRFLETGAPAITLVLKRLVFRASLDVSLSYTPGPDEESQGRKAWTQTLPMLAGSQLRKELLRAGLPVYSQDTLRFDQPYVTGNCGGEGICGTCLVQVLEGKELLNEKDEVEAMVTRKWGAA-NWRLSCRVIVGATNTPGTVRFKLMPQ 277
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BLAST of mRNA_P-canaliculata_contig985.23960.1 vs. uniprot
Match: A0A7S2V297_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V297_9STRA)

HSP 1 Score: 199 bits (505), Expect = 5.830e-55
Identity = 109/206 (52.91%), Postives = 143/206 (69.42%), Query Frame = 1 
Query:  625 RGLVLVAGVEPRGNAEASGQIFVGDTLCWVGVEPTRMTR----VEALDWDLTVS---ALSSLADVREITVVCKRLVKRKTINVKFELPDG-DKTYDIKTGSNLRGEMIRLDVP--VYDPKTLRYDQPYATGNCAGEGICGTCFVEIQEGAELLTPADREEDMLISKGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQTEWREQRSK 1212
            RGLVLV  + P GNA  S +I VGDTLC    +PT   R    +EA+D D T+    ALS  +  +++ ++ KRLVKR+ +NVK  LPDG +KT  + +GSNLRGEMIR  +P  +YDP+T RYDQP+ TGNC GEGICGTC +E+ +G E+L+ AD  E+ML+   N P+RWRLSC+T VG +N  G+V+V+AVPQ E RE R K
Sbjct:    1 RGLVLVKDLAPGGNAALSAKIRVGDTLCRAA-DPTVGARSVVSLEAVDLDGTLQNLGALSFASRQKQLVLIFKRLVKREMVNVKIALPDGGEKTLQMLSGSNLRGEMIRQGLPEYIYDPETKRYDQPFITGNCGGEGICGTCLIEVMDGPEMLSEADNLENMLLE--NQPIRWRLSCRTFVGPDNKSGSVKVRAVPQKEMRESRKK 203
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BLAST of mRNA_P-canaliculata_contig985.23960.1 vs. uniprot
Match: A0A7R9YBT6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBT6_9STRA)

HSP 1 Score: 189 bits (479), Expect = 7.140e-50
Identity = 105/255 (41.18%), Postives = 154/255 (60.39%), Query Frame = 1 
Query:  448 LTLEGVYRKLKLETQGLDDGIVGLESKDTDYGVEIVKSKLIRKPTLGIQLEEVARGGD---GRGLVLVAGVEPRGNAEASG-QIFVGDTLCWVGVEPTRMTRVEALDWDLTVSALSSL-ADVREITVVCKRLVKRKTINVKFELPDGDKT-YDIKTGSNLRGEMIRLDVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEIQEGAELLTPADREEDMLISKGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQTEW 1194
            L++E +  +L ++   +DDG  GL  +D  YG+++VK+ + RKP+LGI L E+    D    R LVLV G+E  GNA A G  + VGD +  +          E  D+D  +  +  +     E+T+V  RLV+R  + + +ELP+GD++      GSNLRG  ++  V +YD +T R+D PYATG+CAGEG+CGTC V +  G +LL+PADR E  LI KG  P+ WR +C+  VG +N EGTV V+  PQ+ +
Sbjct:   58 LSVEDIADRLAIQVFDMDDGKFGLSCRDPAYGLKVVKTSVKRKPSLGIVLNEMVDASDPSADRALVLVGGLE--GNAAAEGVDLEVGDVITAIADGSGGYISTEGRDYDFLIDTIVGVDPGAEELTLVVNRLVERAMVTINYELPNGDRSSVQAPAGSNLRGIFLQEGVRLYDERTRRFDMPYATGDCAGEGLCGTCLVNVWSGEDLLSPADRNE-ALICKGR-PMGWRAACRVFVGADNQEGTVEVRLQPQSRF 308
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BLAST of mRNA_P-canaliculata_contig985.23960.1 vs. uniprot
Match: A0A7S3P6U2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P6U2_9STRA)

HSP 1 Score: 180 bits (456), Expect = 6.030e-46
Identity = 105/260 (40.38%), Postives = 156/260 (60.00%), Query Frame = 1 
Query:  463 VYRKLKLETQGLDDGIVGLESKDTDYGVEIVKSKL---IRKPTLGIQLEEVARGGDGRGLVLVAGVEPRGNAEASGQIFVGDTLCWVGVEPTRMT-RVEALDWDLTVSALSSLADVRE--------ITVVCKRLVKRKTINVKFELPDGD-KTYDIKTGSNLRGEMIRLDVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEIQEGAELLTPADREEDMLISKGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQTEWREQ 1203
            + R+LKLE   L++GI G +S+D  YG+E++++++      P+LG+ L E+A   DGRGLVLV+ V        S  I VGD +  V      +  R   L++D TV A+    DV+E        + +   RLVKR TI V+   P  +  T +   G NLR  ++R D+ +Y+ KT R+D PYATG+CAGEG+CGTC V + EG +LL P D  E+ LI++G  PL WR SC+T+VG  N  GT++V+  PQ+++ ++
Sbjct:  125 IARRLKLEIFDLEEGIFGFDSQDPVYGLEVIQTEIPLSSENPSLGLVLTEMAGNKDGRGLVLVSEVTGNAKNARSSPILVGDVITGVRTSDGSLRERTTGLNYDRTVEAVG---DVKEAALKGDGTLHLELNRLVKRATIQVQVVQPGKNVTTIEALAGENLRRLLLRKDIRLYNRKTKRFDMPYATGDCAGEGLCGTCLVAVNEGMDLLNPKDGAEE-LITRGR-PLSWRASCRTVVGSNNEGGTIQVRVQPQSDFEDE 379
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BLAST of mRNA_P-canaliculata_contig985.23960.1 vs. uniprot
Match: B7G5I1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G5I1_PHATC)

HSP 1 Score: 165 bits (417), Expect = 1.450e-41
Identity = 105/257 (40.86%), Postives = 152/257 (59.14%), Query Frame = 1 
Query:  469 RKLKLETQGLDDGIVGLESKDTDYGVEIVKSKL-IRKPTLGIQLEEVARGGDGRGLVLVAGVEPRGNA-EASGQ-IFVGDTLCWVGV-EPTRMTRVEALDWDLTVSALSSLADVRE---ITVVCKRLVKRKTINVKFELPDGD---KTYDIKTGSNLRGEMIRLDVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEIQEGAELLTPADREEDMLISKGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQTEWREQRS 1209
            +K KLE   LD+G+ G +SKD  YG+E+V + + +    LG+ L E+A   DGRGLV+V+ +   GNA +A+ Q I VGDT+  V   +     RV A ++D TV A+    +      IT+   RL+KR  + V+ E+ DG    +  +   G NLR   +R  + +YD +T R+DQP+ TGNC G+G+CGTC V + +G +LL P D  E + I+KG  P  WR SC+T VG  NV GT+R+   PQ+E  E+ S
Sbjct:   54 QKFKLEIFDLDEGLFGFDSKDNRYGLEVVHTNIDVGNDGLGLVLTEMAGSPDGRGLVMVSKIT--GNAAKANPQAIHVGDTITGVMANDGVLKERVTAFNYDKTVEAIGRAKESSTDGTITLELNRLIKR--LPVRVEIDDGSGHVQVIEALAGENLRRMFMRKQLKLYDERTRRFDQPFNTGNCGGDGVCGTCLVNVLQGMDLLNPKDSHE-VFITKGRPP-SWRASCRTTVGFNNVGGTLRISLHPQSELPEELS 304
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BLAST of mRNA_P-canaliculata_contig985.23960.1 vs. uniprot
Match: D8LNE7_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNE7_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 1.710e-16
Identity = 43/60 (71.67%), Postives = 54/60 (90.00%), Query Frame = -3 
Query: 2351 LKMPVVELLLERGAKVNHSNSSGNTALHYAMSFDTSGKTGVYLINNGADDSIANKEGLSP 2530
            L+MPVVE L++RGA VNH N++GNT+LH+AMS+D+SGK G YLINNGADD+I NK+GLSP
Sbjct: 2858 LQMPVVEFLVQRGADVNHRNATGNTSLHFAMSYDSSGKMGEYLINNGADDTIENKQGLSP 2917
[Close]
BLAST of mRNA_P-canaliculata_contig985.23960.1 vs. uniprot
Match: A0A482SPW6_9ARCH (Ankyrin repeat domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SPW6_9ARCH)

HSP 1 Score: 74.3 bits (181), Expect = 3.010e-12
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = -3 
Query: 2354 VVELLLERGAKVNHSNSSGNTALHYAMSFDTSGKTGVYLINNGADDSIANKEGLS 2518
            + E+L+ RGA +NH NS GNTALHYA++FD  G  G YLI +GADD++ N EGL+
Sbjct:   53 LAEMLILRGASINHQNSQGNTALHYALAFDPEGALGEYLIEHGADDTLENVEGLT 107
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig985.23960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNE9_ECTSI9.700e-12762.54Ferredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8L... [more]
A0A836CRA8_9STRA1.090e-7151.912Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S4DIM7_HETAK9.740e-6948.47Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9CWU2_9STRA9.620e-5844.36PDZ domain-containing protein n=3 Tax=Monodopsidac... [more]
A0A7S2V297_9STRA5.830e-5552.91Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9YBT6_9STRA7.140e-5041.18Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3P6U2_9STRA6.030e-4640.38Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
B7G5I1_PHATC1.450e-4140.86Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
D8LNE7_ECTSI1.710e-1671.67SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A482SPW6_9ARCH3.010e-1258.18Ankyrin repeat domain-containing protein n=1 Tax=a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig985contigP-canaliculata_contig985:21312..27415 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score397.1
Seed ortholog evalue8.4e-108
Seed eggNOG ortholog2880.D8LNE9
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009767,GO:0009773,GO:0009987,GO:0010598,GO:0015979,GO:0016020,GO:0019684,GO:0022900,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0055114,GO:0098796
EggNOG free text desc.2Fe-2S iron-sulfur cluster binding domain
EggNOG OGs2S4WU@2759,COG0633@1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionFerredoxin
Ec32 orthologEc-04_004110.1
Exons6
Model size2754
Cds size1059
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig985.23960.1prot_P-canaliculata_contig985.23960.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig985 22848..27256 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817346.682567-UTR-P-canaliculata_contig985:21311..228471622817346.682567-UTR-P-canaliculata_contig985:21311..22847Pelvetia canaliculata dioeciousUTRP-canaliculata_contig985 21312..22847 -
1693495237.7084084-UTR-P-canaliculata_contig985:21311..228471693495237.7084084-UTR-P-canaliculata_contig985:21311..22847Pelvetia canaliculata dioeciousUTRP-canaliculata_contig985 21312..22847 -
1622817346.7706761-UTR-P-canaliculata_contig985:27256..274151622817346.7706761-UTR-P-canaliculata_contig985:27256..27415Pelvetia canaliculata dioeciousUTRP-canaliculata_contig985 27257..27415 -
1693495237.7804368-UTR-P-canaliculata_contig985:27256..274151693495237.7804368-UTR-P-canaliculata_contig985:27256..27415Pelvetia canaliculata dioeciousUTRP-canaliculata_contig985 27257..27415 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817346.6986344-CDS-P-canaliculata_contig985:22847..230361622817346.6986344-CDS-P-canaliculata_contig985:22847..23036Pelvetia canaliculata dioeciousCDSP-canaliculata_contig985 22848..23036 -
1693495237.7183762-CDS-P-canaliculata_contig985:22847..230361693495237.7183762-CDS-P-canaliculata_contig985:22847..23036Pelvetia canaliculata dioeciousCDSP-canaliculata_contig985 22848..23036 -
1622817346.7121925-CDS-P-canaliculata_contig985:23470..235601622817346.7121925-CDS-P-canaliculata_contig985:23470..23560Pelvetia canaliculata dioeciousCDSP-canaliculata_contig985 23471..23560 -
1693495237.7288578-CDS-P-canaliculata_contig985:23470..235601693495237.7288578-CDS-P-canaliculata_contig985:23470..23560Pelvetia canaliculata dioeciousCDSP-canaliculata_contig985 23471..23560 -
1622817346.7236109-CDS-P-canaliculata_contig985:23772..239111622817346.7236109-CDS-P-canaliculata_contig985:23772..23911Pelvetia canaliculata dioeciousCDSP-canaliculata_contig985 23773..23911 -
1693495237.7412488-CDS-P-canaliculata_contig985:23772..239111693495237.7412488-CDS-P-canaliculata_contig985:23772..23911Pelvetia canaliculata dioeciousCDSP-canaliculata_contig985 23773..23911 -
1622817346.7359376-CDS-P-canaliculata_contig985:24103..242191622817346.7359376-CDS-P-canaliculata_contig985:24103..24219Pelvetia canaliculata dioeciousCDSP-canaliculata_contig985 24104..24219 -
1693495237.7523813-CDS-P-canaliculata_contig985:24103..242191693495237.7523813-CDS-P-canaliculata_contig985:24103..24219Pelvetia canaliculata dioeciousCDSP-canaliculata_contig985 24104..24219 -
1622817346.7476301-CDS-P-canaliculata_contig985:24590..247311622817346.7476301-CDS-P-canaliculata_contig985:24590..24731Pelvetia canaliculata dioeciousCDSP-canaliculata_contig985 24591..24731 -
1693495237.7610419-CDS-P-canaliculata_contig985:24590..247311693495237.7610419-CDS-P-canaliculata_contig985:24590..24731Pelvetia canaliculata dioeciousCDSP-canaliculata_contig985 24591..24731 -
1622817346.759225-CDS-P-canaliculata_contig985:26872..272561622817346.759225-CDS-P-canaliculata_contig985:26872..27256Pelvetia canaliculata dioeciousCDSP-canaliculata_contig985 26873..27256 -
1693495237.7703533-CDS-P-canaliculata_contig985:26872..272561693495237.7703533-CDS-P-canaliculata_contig985:26872..27256Pelvetia canaliculata dioeciousCDSP-canaliculata_contig985 26873..27256 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig985.23960.1

>prot_P-canaliculata_contig985.23960.1 ID=prot_P-canaliculata_contig985.23960.1|Name=mRNA_P-canaliculata_contig985.23960.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=353bp
MLQPSHPTGRTSASLSTWRQLIPLFLLGSLRGGSSFLSPFAPIARKASLL
RKTNAEASDVDSMTPAQEKAPSDSPPAGLAMEEEESDSGMAKSPAGLTLE
GVYRKLKLETQGLDDGIVGLESKDTDYGVEIVKSKLIRKPTLGIQLEEVA
RGGDGRGLVLVAGVEPRGNAEASGQIFVGDTLCWVGVEPTRMTRVEALDW
DLTVSALSSLADVREITVVCKRLVKRKTINVKFELPDGDKTYDIKTGSNL
RGEMIRLDVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEIQEGAELLTP
ADREEDMLISKGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQTEWREQRS
KK*
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mRNA from alignment at P-canaliculata_contig985:21312..27415-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig985.23960.1 ID=mRNA_P-canaliculata_contig985.23960.1|Name=mRNA_P-canaliculata_contig985.23960.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=6104bp|location=Sequence derived from alignment at P-canaliculata_contig985:21312..27415- (Pelvetia canaliculata dioecious)
CGACTTTACCAGCAAAGTTGACCCGCTCCTTTGGACGCTATTACTACTGC
TGTGCTCCAGGAGGCAACACGGACAGCAGGGTTCGAGTTTTACTGTCTGT
GTGAAGGCGGATAAGCACTTCCTTCGGACCCCTCCAAATTTTCCTCCACA
TAAAATCACATGTTGCAACCCTCTCATCCTACAGGACGAACGTCGGCGTC
GTTATCCACCTGGAGGCAACTTATACCGCTGTTTCTGCTGGGTAGCTTAC
GGGGTGGGTCGTCGTTCCTTTCCCCATTCGCTCCTATCGCCAGAAAGGCG
TCTTTGTTGAGGAAGACTAATGCCGAAGCTTCTGATGTGGACTCTATGAC
ACCGGCACAGGAGAAGGCACCCTCAGACTCACCACCAGCTGGGCTGGCTA
TGGAGGAGGAGGAGTCAGACAGCGGAATGGCGAAGAGCCCAGCAGGGCTG
ACGTTAGAAGGGGTATATAGGAAGCTGAAGCTCGAGACTCAGGGACTTGA
CGATGGGATCGTGGGGCTGGAGTCCAAGGATACTGACTATGGGGTGAGTA
CGTCGATGTTTGCACTTCATACGTGCTGTGTGTACTTGCCTCCACGTCCA
ACAGCAAATAGACTACAGGTAGAGCTATCATATCCTCTAATAATCAACGT
CACGTACTGGCAGTAGCAGGATACCAGACAAGCCACCACATGTACAAAAC
ATGCGATGCAACGGAGTAGCACCGGAGAGATTCGCTAAGGCTGCGGTATC
CTCGTTGGTTTTCGTCCCCTTGAAGCACCATCTGAATACAGACTAGAGGC
ACAAGGGGTCAACTACGCAACGCCAGCCCATGCTGCGGTGCTGAAGACTG
AACAGAACCAGGCTCACACTGCTCCAGAGCCACGCAATTGCGCCGCAATC
TCGGACCAATCAGCGATTATCCCTACAATTCGTTCCCGAAGGGAACACCC
CAGCCAACATTAGAATCTTAAAACAGTGGAACACCCGGCGTGTTATGAGT
GCTAGGATCGCTTACAACTGATGGTCAATCATCTCTTCCGATACTTTCTC
TGTATCGCACATGTCGACTACTATAGTGGGTGTGTGAAAGAGAGGCGCAT
AAAAAAATGGTCCATGGGTGAAACCTAAAAACGCAGCACCCGTTTCTGGA
ACTGTCTTGTATGTATGGTCACACATTTAGCAAGAGTATGGATCAACCGG
GTAAGTTTGCCAATCCTGCTCGTGGTCAGCTGACTTGAGGACTACTGGTC
CAGTGCTAGTAGACTCTCGGTAGTGAACGCCATCGGTACGCAGTTGCGTG
ACCCCATAAACGCGGAACTGACCCGATGGCGGCCTACGGTATATATAGAC
GCCGTCGTGGGAAGCGGGGGGAACCCCGTGAGATGTACCAGATTCTGCCT
GAGTGTGGAGAATGAGCAGGCTGACGCCGGGCGGGACGGCCGAACCTATC
TCGCGAGACCAAAGGCTCAGGCGCGAACGGGGACAGGGTAAAATATTTTT
CCCCCAGCTCAACTGACTACGAGCTGGATTGGCAACCATAGCCGGTCGAT
CCATACTCTACTGAAAGTGCTGACCATATATACATACATACATATACGCA
TTATGTCGAAAACAATTCCAGTCCTTTTCCAGGTGTGTGTAAACTCGAGT
ACAGATGCAATTAAGTATGAGCCTTCCGCTGAGGTGGGTAAAGCTTCTGA
TACAGGACCCTTTCAATAGCTTTCCGATTGGTCTGACTCATATTATTATA
CTTTTGGTAGGAGTCCGGGGCCCAAGCTACTCGTTCCTGGGGCCTGTGGG
GATAGACTAAGAAGATATTATGTCGAACTTACCGATAAAATGTGGTGGTT
AAACGATCGGGCGCCGACGTTGAGAGGGGCGTCTCCAGAAAGAACGGAAA
CCTACAAAATATCTATAAAAGACCTACAGGAAAGATCGTCCAAAGAGTTC
GAGGCCCACTCTACTTGTTGATCTAATCGTATGCGGTGACGCCCTCGCAA
CATTGTTCCAGCGTCTTATGGGGACCGATTAAGGCCACGGGGCCTTAGAT
TTCAGGTTGATCTGGCCTTGGACACATTTGGAAGGCGTTCGGGGCCCACG
CTGGATGTCTTGGCGTGACCCTCCGGTCAAGTTGATTCTTAGACTTGTTG
GAATCGATTGAGCATAAACTTACAGCTTATTTCCTCCGCAGCAACTTTTG
ATCTGGACGCCAAAATGAAATGGCGTTAACAGAAAGAGGAGAATCCATAA
ATATAGGGAAAATATTTCAAAGGCTGAGAGCCCACGCTAATTGTTGTGGC
CGATATTGTGCGGGGACGGCCTCGCAGGGCGTTTCTGGCACTTTTGGATA
TCGATTAAGCATGTAATTCCAGCTTATGATTTCGTCCGCAGCAACCTTTT
ACTCCGGGACTGAAATAATAGCGACTAGAGAGAAATGCGAATCCGATAGA
TTCCCCCATTAATACTGTCGGTCCCCTGGCCTGAAGAAGATGTTTGTCTT
GAACTCGAGGTGCGACGACGAAAAGGTTATGCGCCCAAATCGTGGCGTCA
AAAAAGAAAAAAACGAATCCTGTAAAGAATATGCACAACGTCCCGCGACC
ATGCCGCGATGAGAGAACGACTGCACCATGTCCACATGAGTGTTCCTCTC
TGCCCCTGTCGCCAATATTTTTTCGTCAACTAAGGTCGAGATCGTCAAGT
CGAAGCTGATACGCAAGCCGACCTTGGGCATTCAACTCGAGGAGGTGGCA
CGTGGTGGCGATGGCCGCGGTTTGGTGTTAGTTGCGGGCGTTGAGCCGAG
GGGAAACGCCGAGGCCTCAGGGCAGGTGAGATGACGTCAATATTCAATAT
TCCGATCAATATCGCAGCTTGAAGTCCTGCTGCGACGACACCGGAAGAGG
TGGCGCATCTGCTAGGATCGTTTGTCATTACAGGCGTATTTCGAGCTCAG
CCAGCCGTAACGACCAAAGGAGGCGTAGCCCTTCAGAACAAAGATAATTT
TTGTAAGTTGTTGCGAAATAGGGAGGGTCTTTGCGACTTCCCGAAATTCC
TTGCTCATGTTGCGTATCACCGTGGCTCTCACGATGGCCTCGCACCTCAC
CACGGCTACGTTACTCACTTCGCTGATGTGCTGTTTTGCCTGTGCTTGCC
GCGCCGGTGATGCTGTCGCCGTGATCAACTTATGTGGACATCGAAGATTT
TCGTGGGAGATACCCTCTGTTGGGTCGGGGTAGAGCCCACGCGCATGACG
AGAGTGGAGGCACTAGACTGGGATCTAACCGTCAGCGCCCTTAGCAGTCT
CGCAGACGTCAGGCGAGCGCGACAAAGCCGCACAGCACAATAGTGCAGTT
GCCTTAAATTTCCTTCTCTTGCCTTCGCTGTCTCTTGCTACTAATTTCAA
CGCCACTTGTTGTATGGCGTATGGCTGCTGACGACGCCTAAAACTTGAAC
AAAACCATCTAAAACCGTCTTTTTCGCCCCGCCGTGTCACGTCTTCTTTT
GCAGGGAAATTACGGTGGTGTGCAAGCGACTGGTGAAGCGAAAAACGATC
AACGTAAAGTTCGAGCTTCCAGACGGCGACAAAACCTACGACATCAAAAC
CGGCAGCAACCTAAGGGGCGAAATGATTCGGCTAGACGTTCCGGTCGGTT
TCACGTTGTCAGCTGTCTGCTTTTCCGTAGATTATTGAAAATGCCTCCAC
CACAGTATACGGAAACCCCCGCGCACCACCGAACAGACAGTTGCACTTAC
TGCGGGGTTCTTGTAGCCGGGGTCCCACTATTATCAATAGTCGTTTCTAG
TCTGAAGCCTTTTTGGTCCACTTTTTTGTTTGCCTTTGTACCGTATGTTC
TCAAGGTGTACGACCCTAAAACGCTGCGATACGACCAACCGTACGCGACT
GGAAACTGCGCAGGAGAAGGCATCTGCGGCACCTGTTTCGTGGAGGTACC
TTGGCCGTATTGCGCGAGTCAACAATGTTTCCTGTCATAAAAACTACTAT
CAGCCCGTTCTGTCCTCAATTCCTCAATGTATTTTTCTCGATGCGGACAA
ACGTCTACAAGCAGGGTCAAATCATTCCGATGCGGACGAATGAAAAGGCT
CACGGTCAGCTGGCCTGCGGTTGCTTGATACAGGAGGCAATTTGATCGAT
CCTTCCGATGTTGCGGACCTGTATCGCCATTGTTCCTGCCTTTGAAATAA
AAAAGCATCGCTTATGGCACAAAGGGCGCAGAGGTGCAAGTGTGCTGGTG
GGCCGCGTTGCTTTGGTACACATGCCTTGAAGCCTTGAAATGAACGTGAG
GCTACGAACGGGAGCCGGCTGGAGTCTTACACACCCTCGTGGATCCCCCC
CCCCCCCTCTCCCCTATCCAACCCTCCAGATCCAAGAGGGAGCAGAACTC
TTGACGCCCGCCGATCGTGAAGAAGATATGCTCATCTCAAAGGGGAACCT
GCCGCTCCGTTGGCGTTTGTCATGCAAAACCATCGTGGGCCGCGAGAACG
TCGAGGGTACCGTGCGGGTGAAAGCGGTACCCCAGACGGAGTGGCGGGAG
CAGCGGAGCAAGAAATGATCCCGCAAAAATCTTAACAAGAAACACCTTGT
ACGAAGTCGCAAGAGCATCTCAAGGGAAGTGAAATCGACCCGTCCTATAA
AGCTCGCCAGGTTATATTCCGTAATTTGAGCGTTGTCGATTCTGCAGTTG
TGTGTCCGCACTCATAATACGACGCACGCGTGCCCTTTTGTGTGTTTGCT
TCAAGGGAGGACTCGCTCTGTTATTAAGATCTGCGTTTGATGTCGGTGTT
CCGAAGACACCTTCCTTGCAGTTTGACGATGTGCTTGACTAGAGGTTAGG
GAAAACGTCCATCCCTATTGAAAGCTACAGCTCTAACCGCGTTGGTGATT
GATTGTAATCGTGGTTACTCCAGCTCGACCGCGATACTCGACTTGTGCTT
CTGAACACTGTTCTCGCAGTCGTTGGAATAATTCAGCTCAACGAGAATCT
CAGCTATTGAGCAGGCGTTTCTTGCCCGTATCCCAACTGGCGTGGTACGA
GTCTTTAAAGTTTGAAGTTGTAAATAGTGCAGGCTCCTATGGAAGGCCGG
GGACAATTCTAATACTCTTCAAAAGCCGATCTAATTTTTTTGAGTGCCTC
GTCTGTTGAGTAGCGCCCTTGAGGATCTCGGCCGTTGGACAGCAAATCAC
CCCCCGTATCCAAAAGGACGTGACATGCGTGGGCCACGAGTCCTCAAGCG
CGAAGTTGTGAAAAGTGGAGTGTGAAGGCTCCCCCGGAAGGCGAAAGGTT
GCGCCCTAGTGATGACTAATACTCGTCGACAGCCGAAAGGCTTCCTTAAA
CGCCGTCGTCTGTTGGCCACGGAGAGACCAAACACCCGACGAATTGAGAA
ACGGGCGGGGCGTGACTGAGGACGTGGTTGTTGAACTTGTACTCGTATGG
TGCAGCAACGCATGGTTTCTAGACACTAGTCAAGGTTTTTCTGGTGATGA
GCTTGCAGGTAGCCATCATCCGCGCTTTCTGGGGATGAAATGGTACATGA
GCGCGCCAGGAGATTTTTGCACTATCCATGCGTGCTCCCCAGCGGAGACA
AAAGCAGGCACCGTGAGCGTCTACTTGATGCTATGGTATAATGGTAGGCG
TAGTATGACGGTACACACCAGGCACGCTGCTTTTCCCGCTACCACTCACA
AGGAGAAAGGCCCTCCTTGTTCGCAATAGAGTCATCAGCACCGTTGTTGA
TGAGATACACTCCCGTCTTGCCGCTTGTGTCGAAAGACATGGCATAGTGC
AGCGCTGTGTTTCCAGACGAGTTTGAGTGGTTGACCTTGGCCCCGCGCTC
CAGCAAGAGCTCGACGACGGGCATCTTTAAGGAGGGGCCGAGTAGTTTTA
GCGGCGCAGCCGCGGGTGATCGGGTATGTCAACGAGTCTTGTTGTGACGA
ACTTCGTAAAGGTACAGGCAGATGTTTCTCGCCAAATGGTATCGTAGTAT
GTGATCGGGTATGTCAGCGAGTCTTTTGAAAGGTGACATATGATTTGGAG
GTAAGAATAACTTGGTATAAATTACGCAACAAATGAGTAGATCAAATCGC
GCCA
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Coding sequence (CDS) from alignment at P-canaliculata_contig985:21312..27415-

>mRNA_P-canaliculata_contig985.23960.1 ID=mRNA_P-canaliculata_contig985.23960.1|Name=mRNA_P-canaliculata_contig985.23960.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2118bp|location=Sequence derived from alignment at P-canaliculata_contig985:21312..27415- (Pelvetia canaliculata dioecious)
ATGTTGCAACCCTCTCATCCTACAGGACGAACGTCGGCGTCGTTATCCAC
CTGGAGGCAACTTATACCGCTGTTTCTGCTGGGTAGCTTACGGGGTGGGT
CGTCGTTCCTTTCCCCATTCGCTCCTATCGCCAGAAAGGCGTCTTTGTTG
AGGAAGACTAATGCCGAAGCTTCTGATGTGGACTCTATGACACCGGCACA
GGAGAAGGCACCCTCAGACTCACCACCAGCTGGGCTGGCTATGGAGGAGG
AGGAGTCAGACAGCGGAATGGCGAAGAGCCCAGCAGGGCTGACGTTAGAA
GGGGTATATAGGAAGCTGAAGCTCGAGACTCAGGGACTTGACGATGGGAT
CGTGGGGCTGGAGTCCAAGGATACTGACTATGGGATGTTGCAACCCTCTC
ATCCTACAGGACGAACGTCGGCGTCGTTATCCACCTGGAGGCAACTTATA
CCGCTGTTTCTGCTGGGTAGCTTACGGGGTGGGTCGTCGTTCCTTTCCCC
ATTCGCTCCTATCGCCAGAAAGGCGTCTTTGTTGAGGAAGACTAATGCCG
AAGCTTCTGATGTGGACTCTATGACACCGGCACAGGAGAAGGCACCCTCA
GACTCACCACCAGCTGGGCTGGCTATGGAGGAGGAGGAGTCAGACAGCGG
AATGGCGAAGAGCCCAGCAGGGCTGACGTTAGAAGGGGTATATAGGAAGC
TGAAGCTCGAGACTCAGGGACTTGACGATGGGATCGTGGGGCTGGAGTCC
AAGGATACTGACTATGGGGTCGAGATCGTCAAGTCGAAGCTGATACGCAA
GCCGACCTTGGGCATTCAACTCGAGGAGGTGGCACGTGGTGGCGATGGCC
GCGGTTTGGTGTTAGTTGCGGGCGTTGAGCCGAGGGGAAACGCCGAGGCC
TCAGGGCAGGTCGAGATCGTCAAGTCGAAGCTGATACGCAAGCCGACCTT
GGGCATTCAACTCGAGGAGGTGGCACGTGGTGGCGATGGCCGCGGTTTGG
TGTTAGTTGCGGGCGTTGAGCCGAGGGGAAACGCCGAGGCCTCAGGGCAG
ATTTTCGTGGGAGATACCCTCTGTTGGGTCGGGGTAGAGCCCACGCGCAT
GACGAGAGTGGAGGCACTAGACTGGGATCTAACCGTCAGCGCCCTTAGCA
GTCTCGCAGACGTCAGATTTTCGTGGGAGATACCCTCTGTTGGGTCGGGG
TAGAGCCCACGCGCATGACGAGAGTGGAGGCACTAGACTGGGATCTAACC
GTCAGCGCCCTTAGCAGTCTCGCAGACGTCAGGGAAATTACGGTGGTGTG
CAAGCGACTGGTGAAGCGAAAAACGATCAACGTAAAGTTCGAGCTTCCAG
ACGGCGACAAAACCTACGACATCAAAACCGGCAGCAACCTAAGGGGCGAA
ATGATTCGGCTAGACGTTCCGGGAAATTACGGTGGTGTGCAAGCGACTGG
TGAAGCGAAAAACGATCAACGTAAAGTTCGAGCTTCCAGACGGCGACAAA
ACCTACGACATCAAAACCGGCAGCAACCTAAGGGGCGAAATGATTCGGCT
AGACGTTCCGGTGTACGACCCTAAAACGCTGCGATACGACCAACCGTACG
CGACTGGAAACTGCGCAGGAGAAGGCATCTGCGGCACCTGTTTCGTGGAG
GTGTACGACCCTAAAACGCTGCGATACGACCAACCGTACGCGACTGGAAA
CTGCGCAGGAGAAGGCATCTGCGGCACCTGTTTCGTGGAGATCCAAGAGG
GAGCAGAACTCTTGACGCCCGCCGATCGTGAAGAAGATATGCTCATCTCA
AAGGGGAACCTGCCGCTCCGTTGGCGTTTGTCATGCAAAACCATCGTGGG
CCGCGAGAACGTCGAGGGTACCGTGCGGGTGAAAGCGGTACCCCAGACGG
AGTGGCGGGAGCAGCGGAGCAAGAAATGAATCCAAGAGGGAGCAGAACTC
TTGACGCCCGCCGATCGTGAAGAAGATATGCTCATCTCAAAGGGGAACCT
GCCGCTCCGTTGGCGTTTGTCATGCAAAACCATCGTGGGCCGCGAGAACG
TCGAGGGTACCGTGCGGGTGAAAGCGGTACCCCAGACGGAGTGGCGGGAG
CAGCGGAGCAAGAAATGA
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