mRNA_P-canaliculata_contig985.23960.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig985.23960.1 vs. uniprot
Match: D8LNE9_ECTSI (Ferredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNE9_ECTSI) HSP 1 Score: 395 bits (1014), Expect = 9.700e-127 Identity = 207/331 (62.54%), Postives = 251/331 (75.83%), Query Frame = 1 Query: 229 LFLLGSLRGGSSFLSPFAPIARKASLLRKT------NAEASDVDSMTPAQEKAPSDSPPAGLAMEEEESDSGMAKSPAGLTLEGVYRKLKLETQGLDDGIVGLESKDTDYGVEIVKSKLIRKPTLGIQLEEVARGGDGRGLVLVAGVEPRGNAEASGQIFVGDTLCWVGVEPTRMTRVEALDWDLTVSALSSLADVREITVVCKRLVKRKTINVKFELPDGDKTYDIKTGSNLRGEMIRLDVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEIQEGAELLTPADREEDMLISKGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQTEWREQ 1203
L L LR G+SFL P I R + ++ A +D D+ A + A E+E D G+A+SP+GLTL+GVY++L LETQ DG+VGLESKDTDY +E+VK ++ RKP+LG+QLEEVARGGDGRGLVLVAG+EP GNAEASG+I VGDTLC G+E M+RVEALDWD TVS L S A+ EI +V KRLVKR++INV+FELP G + ++IK GSNLRGEMIRLDVPVYDP+T R+DQPYATGNCAGEG CGTCFVE+Q+GA+LLT D+EE ML+S+GNLP+RWRLSCK IVG+EN GTVR+KAVPQ EWR Q
Sbjct: 11 LLLALQLRNGASFLLPSPAITRCSGFASRSASCGVMRASEADGDAEETASLNVEDE------AKVEDEGDDGLARSPSGLTLDGVYKRLTLETQSRADGVVGLESKDTDYAIEVVKVQMQRKPSLGMQLEEVARGGDGRGLVLVAGLEPGGNAEASGKICVGDTLCSAGIEGD-MSRVEALDWDQTVSVLGSFAEESEIVLVIKRLVKRESINVQFELPSGSRDHEIKAGSNLRGEMIRLDVPVYDPRTKRFDQPYATGNCAGEGTCGTCFVEVQQGADLLTSPDQEELMLLSRGNLPVRWRLSCKVIVGKENKAGTVRLKAVPQAEWRSQ 334
BLAST of mRNA_P-canaliculata_contig985.23960.1 vs. uniprot
Match: A0A836CRA8_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRA8_9STRA) HSP 1 Score: 248 bits (632), Expect = 1.090e-71 Identity = 136/262 (51.91%), Postives = 173/262 (66.03%), Query Frame = 1 Query: 445 GLTLEGVYRKLKLETQGLDDGIVGLESKDTDYGVEIVKSKLIRKPTLGIQLEEVARGGDGRGLVLVAGVEPRGNAEASGQIFVGDTLCWVGVEPTR-MTRVEALDWDLTVSALSSLADVREITVVCKRLVKRKTINVKFELPD-----------GDKTYDIKTGSNLRGEMIRLDVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEIQEGAELLTPADREEDMLISKGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQTEW 1194
G++LEG+Y++LK+E LD+GI+GLES+D +G+EIV RGLVL+ V GNA SG I GDTL +VG E R MTRVE D+D TV+AL AD+ EIT+V KRLV+RKT+ V FE P G + + GSNLR EMIR D+PVYD KT R+DQPYATGNC GEGICGTCFVE+QEGAELL+P D E+M++ NLP RWRLSC+T+VG +N G VR++++PQ+ +
Sbjct: 41 GVSLEGIYKRLKIEILDLDEGIIGLESRDPAFGIEIV-----------------------RGLVLIGDVG--GNAAESGLINTGDTLTYVGNEAARDMTRVEGQDYDTTVAALGKYADLAEITLVLKRLVQRKTLEVTFETPTAYAEDGTAVEWGGQGVQMLAGSNLRSEMIRRDIPVYDAKTRRFDQPYATGNCGGEGICGTCFVEVQEGAELLSPPDGLENMVMR--NLPRRWRLSCRTVVGGKNEAGQVRLRSIPQSAY 275
BLAST of mRNA_P-canaliculata_contig985.23960.1 vs. uniprot
Match: A0A7S4DIM7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DIM7_HETAK) HSP 1 Score: 241 bits (614), Expect = 9.740e-69 Identity = 127/262 (48.47%), Postives = 172/262 (65.65%), Query Frame = 1 Query: 409 EESDSGMAKSPAGLTLEGVYRKLKLETQGLDDGIVGLESKDTDYGVEIVKSKLIRKPTLGIQLEEVARGGDGRGLVLVAGVEPRGNAEASGQIFVGDTLCWVGVEPTRMTRVEALDWDLTVSALSSLADVREITVVCKRLVKRKTINVKFELPDGDKT-YDIKTGSNLRGEMIRLDVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEIQEGAELLTPADREEDMLISKGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQTE 1191
E ++ G+ ++ GLTLE + K+ LD+G+ GL+++D +YG+EI K+++ R+ LG+ L E+ G DGRGLVLV V GNA +GQ VGD L WVG EP MTRVE LD+D T++AL AD +T+V KRLV+R+ + V PDG + ++ GS LRGEM+R + VYDP R+DQPY TGNC GEG+CGTC V + EG ELL+ DR E M++ K P R+RLSC+TIVG N G V +K++P E
Sbjct: 54 EGAEDGVTRNADGLTLEEIAGLFKMSVFDLDEGLYGLDTRDVNYGIEIAKARVSREGGLGLGLSEMMAGRDGRGLVLVEDVAEGGNAATTGQFRVGDALSWVGEEPGDMTRVEGLDFDGTLAALGKYADREAVTLVAKRLVRRQPLEVTLIQPDGSEAKLEMLAGSVLRGEMLRQGLQVYDPSQKRFDQPYVTGNCGGEGLCGTCLVAVLEGKELLSLPDRVEAMVLEKR--PARYRLSCRTIVGVTNQPGKVVLKSMPTLE 313
BLAST of mRNA_P-canaliculata_contig985.23960.1 vs. uniprot
Match: A0A4D9CWU2_9STRA (PDZ domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWU2_9STRA) HSP 1 Score: 209 bits (533), Expect = 9.620e-58 Identity = 122/275 (44.36%), Postives = 159/275 (57.82%), Query Frame = 1 Query: 415 SDSGMAKSPAGLTLEGVYRKLKLETQGLDDGIVGLESKDTDYGVEIVKSKL-IRKPTLGIQLEEVARGGDGRGLVLVAGVEPRGNAEAS----GQIFVGDTLCWVGVEPTRMTRVEALDWDLTVSALSSLADVRE--ITVVCKRLVKRKTINVKFELPDGD-----------KTYDIKTGSNLRGEMIRLDVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEIQEGAELLTPADREEDMLISKGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQ 1185
S++ + P LTLE + K+K E LD G GLESKD Y VEI K + + + +G+ LEE+ RG DGRG VLV+ + P GNA + G+I VGD +C++G EP M R E LD++ T+ AL + IT+V KRLV R +++V G +T + GS LR E++R +PVY TLR+DQPY TGNC GEGICGTC V++ EG ELL D E M+ K WRLSC+ IVG N GTVR K +PQ
Sbjct: 4 SETTNSNVPPPLTLEEISNKIKFEITDLDAGAYGLESKDVAYAVEIAKVDIPLGEGGIGLGLEELRRGQDGRGCVLVSSLPPEGNAAQAAGDDGKIRVGDMICYLGQEPRGMVRTEGLDFEQTMGALRRFLETGAPAITLVLKRLVFRASLDVSLSYTPGPDEESQGRKAWTQTLPMLAGSQLRKELLRAGLPVYSQDTLRFDQPYVTGNCGGEGICGTCLVQVLEGKELLNEKDEVEAMVTRKWGAA-NWRLSCRVIVGATNTPGTVRFKLMPQ 277
BLAST of mRNA_P-canaliculata_contig985.23960.1 vs. uniprot
Match: A0A7S2V297_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V297_9STRA) HSP 1 Score: 199 bits (505), Expect = 5.830e-55 Identity = 109/206 (52.91%), Postives = 143/206 (69.42%), Query Frame = 1 Query: 625 RGLVLVAGVEPRGNAEASGQIFVGDTLCWVGVEPTRMTR----VEALDWDLTVS---ALSSLADVREITVVCKRLVKRKTINVKFELPDG-DKTYDIKTGSNLRGEMIRLDVP--VYDPKTLRYDQPYATGNCAGEGICGTCFVEIQEGAELLTPADREEDMLISKGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQTEWREQRSK 1212
RGLVLV + P GNA S +I VGDTLC +PT R +EA+D D T+ ALS + +++ ++ KRLVKR+ +NVK LPDG +KT + +GSNLRGEMIR +P +YDP+T RYDQP+ TGNC GEGICGTC +E+ +G E+L+ AD E+ML+ N P+RWRLSC+T VG +N G+V+V+AVPQ E RE R K
Sbjct: 1 RGLVLVKDLAPGGNAALSAKIRVGDTLCRAA-DPTVGARSVVSLEAVDLDGTLQNLGALSFASRQKQLVLIFKRLVKREMVNVKIALPDGGEKTLQMLSGSNLRGEMIRQGLPEYIYDPETKRYDQPFITGNCGGEGICGTCLIEVMDGPEMLSEADNLENMLLE--NQPIRWRLSCRTFVGPDNKSGSVKVRAVPQKEMRESRKK 203
BLAST of mRNA_P-canaliculata_contig985.23960.1 vs. uniprot
Match: A0A7R9YBT6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBT6_9STRA) HSP 1 Score: 189 bits (479), Expect = 7.140e-50 Identity = 105/255 (41.18%), Postives = 154/255 (60.39%), Query Frame = 1 Query: 448 LTLEGVYRKLKLETQGLDDGIVGLESKDTDYGVEIVKSKLIRKPTLGIQLEEVARGGD---GRGLVLVAGVEPRGNAEASG-QIFVGDTLCWVGVEPTRMTRVEALDWDLTVSALSSL-ADVREITVVCKRLVKRKTINVKFELPDGDKT-YDIKTGSNLRGEMIRLDVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEIQEGAELLTPADREEDMLISKGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQTEW 1194
L++E + +L ++ +DDG GL +D YG+++VK+ + RKP+LGI L E+ D R LVLV G+E GNA A G + VGD + + E D+D + + + E+T+V RLV+R + + +ELP+GD++ GSNLRG ++ V +YD +T R+D PYATG+CAGEG+CGTC V + G +LL+PADR E LI KG P+ WR +C+ VG +N EGTV V+ PQ+ +
Sbjct: 58 LSVEDIADRLAIQVFDMDDGKFGLSCRDPAYGLKVVKTSVKRKPSLGIVLNEMVDASDPSADRALVLVGGLE--GNAAAEGVDLEVGDVITAIADGSGGYISTEGRDYDFLIDTIVGVDPGAEELTLVVNRLVERAMVTINYELPNGDRSSVQAPAGSNLRGIFLQEGVRLYDERTRRFDMPYATGDCAGEGLCGTCLVNVWSGEDLLSPADRNE-ALICKGR-PMGWRAACRVFVGADNQEGTVEVRLQPQSRF 308
BLAST of mRNA_P-canaliculata_contig985.23960.1 vs. uniprot
Match: A0A7S3P6U2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P6U2_9STRA) HSP 1 Score: 180 bits (456), Expect = 6.030e-46 Identity = 105/260 (40.38%), Postives = 156/260 (60.00%), Query Frame = 1 Query: 463 VYRKLKLETQGLDDGIVGLESKDTDYGVEIVKSKL---IRKPTLGIQLEEVARGGDGRGLVLVAGVEPRGNAEASGQIFVGDTLCWVGVEPTRMT-RVEALDWDLTVSALSSLADVRE--------ITVVCKRLVKRKTINVKFELPDGD-KTYDIKTGSNLRGEMIRLDVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEIQEGAELLTPADREEDMLISKGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQTEWREQ 1203
+ R+LKLE L++GI G +S+D YG+E++++++ P+LG+ L E+A DGRGLVLV+ V S I VGD + V + R L++D TV A+ DV+E + + RLVKR TI V+ P + T + G NLR ++R D+ +Y+ KT R+D PYATG+CAGEG+CGTC V + EG +LL P D E+ LI++G PL WR SC+T+VG N GT++V+ PQ+++ ++
Sbjct: 125 IARRLKLEIFDLEEGIFGFDSQDPVYGLEVIQTEIPLSSENPSLGLVLTEMAGNKDGRGLVLVSEVTGNAKNARSSPILVGDVITGVRTSDGSLRERTTGLNYDRTVEAVG---DVKEAALKGDGTLHLELNRLVKRATIQVQVVQPGKNVTTIEALAGENLRRLLLRKDIRLYNRKTKRFDMPYATGDCAGEGLCGTCLVAVNEGMDLLNPKDGAEE-LITRGR-PLSWRASCRTVVGSNNEGGTIQVRVQPQSDFEDE 379
BLAST of mRNA_P-canaliculata_contig985.23960.1 vs. uniprot
Match: B7G5I1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G5I1_PHATC) HSP 1 Score: 165 bits (417), Expect = 1.450e-41 Identity = 105/257 (40.86%), Postives = 152/257 (59.14%), Query Frame = 1 Query: 469 RKLKLETQGLDDGIVGLESKDTDYGVEIVKSKL-IRKPTLGIQLEEVARGGDGRGLVLVAGVEPRGNA-EASGQ-IFVGDTLCWVGV-EPTRMTRVEALDWDLTVSALSSLADVRE---ITVVCKRLVKRKTINVKFELPDGD---KTYDIKTGSNLRGEMIRLDVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEIQEGAELLTPADREEDMLISKGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQTEWREQRS 1209
+K KLE LD+G+ G +SKD YG+E+V + + + LG+ L E+A DGRGLV+V+ + GNA +A+ Q I VGDT+ V + RV A ++D TV A+ + IT+ RL+KR + V+ E+ DG + + G NLR +R + +YD +T R+DQP+ TGNC G+G+CGTC V + +G +LL P D E + I+KG P WR SC+T VG NV GT+R+ PQ+E E+ S
Sbjct: 54 QKFKLEIFDLDEGLFGFDSKDNRYGLEVVHTNIDVGNDGLGLVLTEMAGSPDGRGLVMVSKIT--GNAAKANPQAIHVGDTITGVMANDGVLKERVTAFNYDKTVEAIGRAKESSTDGTITLELNRLIKR--LPVRVEIDDGSGHVQVIEALAGENLRRMFMRKQLKLYDERTRRFDQPFNTGNCGGDGVCGTCLVNVLQGMDLLNPKDSHE-VFITKGRPP-SWRASCRTTVGFNNVGGTLRISLHPQSELPEELS 304
BLAST of mRNA_P-canaliculata_contig985.23960.1 vs. uniprot
Match: D8LNE7_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNE7_ECTSI) HSP 1 Score: 96.7 bits (239), Expect = 1.710e-16 Identity = 43/60 (71.67%), Postives = 54/60 (90.00%), Query Frame = -3 Query: 2351 LKMPVVELLLERGAKVNHSNSSGNTALHYAMSFDTSGKTGVYLINNGADDSIANKEGLSP 2530
L+MPVVE L++RGA VNH N++GNT+LH+AMS+D+SGK G YLINNGADD+I NK+GLSP
Sbjct: 2858 LQMPVVEFLVQRGADVNHRNATGNTSLHFAMSYDSSGKMGEYLINNGADDTIENKQGLSP 2917
BLAST of mRNA_P-canaliculata_contig985.23960.1 vs. uniprot
Match: A0A482SPW6_9ARCH (Ankyrin repeat domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SPW6_9ARCH) HSP 1 Score: 74.3 bits (181), Expect = 3.010e-12 Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = -3 Query: 2354 VVELLLERGAKVNHSNSSGNTALHYAMSFDTSGKTGVYLINNGADDSIANKEGLS 2518
+ E+L+ RGA +NH NS GNTALHYA++FD G G YLI +GADD++ N EGL+
Sbjct: 53 LAEMLILRGASINHQNSQGNTALHYALAFDPEGALGEYLIEHGADDTLENVEGLT 107 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig985.23960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig985.23960.1 >prot_P-canaliculata_contig985.23960.1 ID=prot_P-canaliculata_contig985.23960.1|Name=mRNA_P-canaliculata_contig985.23960.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=353bp MLQPSHPTGRTSASLSTWRQLIPLFLLGSLRGGSSFLSPFAPIARKASLLback to top mRNA from alignment at P-canaliculata_contig985:21312..27415- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig985.23960.1 ID=mRNA_P-canaliculata_contig985.23960.1|Name=mRNA_P-canaliculata_contig985.23960.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=6104bp|location=Sequence derived from alignment at P-canaliculata_contig985:21312..27415- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig985:21312..27415- >mRNA_P-canaliculata_contig985.23960.1 ID=mRNA_P-canaliculata_contig985.23960.1|Name=mRNA_P-canaliculata_contig985.23960.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2118bp|location=Sequence derived from alignment at P-canaliculata_contig985:21312..27415- (Pelvetia canaliculata dioecious)back to top |