mRNA_P-canaliculata_contig985.23957.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig985.23957.1
Unique NamemRNA_P-canaliculata_contig985.23957.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig985.23957.1 vs. uniprot
Match: D8LNE8_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNE8_ECTSI)

HSP 1 Score: 527 bits (1357), Expect = 3.170e-180
Identity = 285/514 (55.45%), Postives = 350/514 (68.09%), Query Frame = 1 
Query:    1 ILAAKAQHDLVKAKREQAQIEIVNHGKIVATLKREDVDAAGRITEDHVYAYDQNKFLGQIFPSIQVGYIITKLFGVANLPLEDVPLQEILAELKAAPRPHTLEFMRYDKKFNRSTLKWESLEEVRRQGKYVRDARDEMGTPLMVAVIRGATTSVRWLLERDAMLDVLDRARCTPLMH-------------------------------------------------------------------ALLSKSDEMASLLMDHPVTLRATDVQWGWTALHYAGHVGMVTVAESLLDSLNSKTINLGKQIGQTPLDVARKGHQLRTTLLLETFLRKEPAHEVTADGGVHIWQGSHCAAHPVWASDQGFQCVITIADPRFSEKELGWLDDDEEIDHFRIDAEVVDDDDTSKRPWNNRAQHTRAITNFLDMAVRRRRKVLIHCRNGKSTSVAVVAVYRLLKHGVGVRSTLSAVASARGDSMDRSPPMAVGLQQLQEDFAREKKKRLEQRARLTPILSLGF 1341
            ILAAK Q+DLVK  REQAQ +++ HG+ +A LKRE+V+AA +IT+DHV+A D+ K LG IFPSI+VG+IIT+LFG+ NL LEDVP +E+L ELKAAPRPHTLEF+RYD  FNR TLKWE+LEEVR+QGKYVRDAR+E     + A   G    ++  L+R   ++  D    T  MH                                                                   A+LSKS+ MA+L MD+ V L+ATDVQWGWTALH A HVGMV V E+LL    S       +IGQTPLDVA +  Q++TT LLE FLR EPAHEV A+ G +IWQGSH AAHPVWASDQGF+C+++I DPRF +K+LGWL+DD ++ H R++AEV DD+DTS R WNN AQHTR I +FL  AVRRR+K+L+HCRNG+STSVA++  YRLLKHGVGVR+TLS +A ARG+SMD SP MA GLQQLQEDFA+EK+KRL +RAR  PILSLGF
Sbjct:  136 ILAAKEQYDLVKVDREQAQADVLAHGRTMAKLKREEVEAAEKITDDHVHACDRGKSLGDIFPSIRVGFIITRLFGIVNLNLEDVPFEEVLLELKAAPRPHTLEFLRYDMNFNRLTLKWETLEEVRQQGKYVRDAREER-LYFVKACAEGDIDRLQIRLDRGEDVESTDLQGNTG-MHVAAANSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAILSKSEVMAALFMDYSVALQATDVQWGWTALHCAAHVGMVKVVENLLGKRASPYAE--SKIGQTPLDVASRARQIKTTALLEAFLRAEPAHEVIAEAGANIWQGSHAAAHPVWASDQGFECILSIVDPRFPDKKLGWLEDDGDVRHLRVEAEV-DDEDTSPRAWNNIAQHTRVIISFLYTAVRRRKKILVHCRNGRSTSVAMLTAYRLLKHGVGVRNTLSTIARARGESMDLSPAMAAGLQQLQEDFAKEKEKRLVERARTAPILSLGF 644
[Close]
BLAST of mRNA_P-canaliculata_contig985.23957.1 vs. uniprot
Match: A0A836CC25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC25_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 5.960e-15
Identity = 45/120 (37.50%), Postives = 76/120 (63.33%), Query Frame = 1 
Query:   64 IVNHGKIVATLKREDVDAAGRITEDHVYAYDQNKFLGQIFPSIQVGYIITKLF------GVANLPLEDVPLQEILAELKAAPRPHTLEFMRYDKKFNRSTLKWESLEEVRRQGKYVRDAR 405
            ++ HG+++A  ++ +  AA  +T+DHV A ++ + +G +FP++Q+G+++ +LF      G A + LE +P Q +L  + AAPRPHTL   RYD + +  T  WESL  +RR+G  + D R
Sbjct:   51 LLAHGRVLAERRQRERAAAAAVTDDHVTAAERVQGVGNLFPAVQMGFVVAQLFDGGGGGGEAAVALEALPFQAVLDRIGAAPRPHTLALARYDYRRSGLTGAWESLAALRRRGCLLADPR 170
[Close]
BLAST of mRNA_P-canaliculata_contig985.23957.1 vs. uniprot
Match: A0A7S1XWC5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XWC5_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.690e-14
Identity = 53/135 (39.26%), Postives = 83/135 (61.48%), Query Frame = 1 
Query:   28 LVKAKREQAQIEIVNHGKIVATLKRE-------DVDAAGRITEDHVYAYDQNKFLGQIFPSIQVGYIITKLFGVANLPLEDVPLQEILAELKAAPRPHTLEFMRYDKKFNRSTLKWESLEEVRRQGKYVRDARDE 411
            LV+ +  +A+ E+    +IV  ++RE       + +AA RITEDHV A ++   L ++FP+IQVG+ ITK+ GV   P ED P  +I   L+ +  PH++EF RYD +   ++  W +L+E+R +G YV DAR +
Sbjct:  154 LVEQEVIEAKAELERRSEIVMRVQREMDDTIQLEKEAAARITEDHVTALEEGCGLPELFPTIQVGFCITKINGV---PCEDCPFGDIFDLLRDSISPHSVEFRRYDYRRVGASADWLTLQELRDRGCYVEDARHQ 285
[Close]
BLAST of mRNA_P-canaliculata_contig985.23957.1 vs. uniprot
Match: A0A7S2S5Z2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5Z2_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.050e-13
Identity = 59/191 (30.89%), Postives = 100/191 (52.36%), Query Frame = 1 
Query:    1 ILAAKAQHDLVKAKREQAQIEIVNHGKIVATLKREDVDAAGRITEDHVYAYDQNKFLGQIFPSIQVGYIITKLFGVANLPLEDVPLQEILAELKAAPRPHTLEFMRYDKKFNRSTLKWESLEEVRRQGKYVRDARDEMGTPLMVAVIRGATTSVRWLLERDAMLDVLDRARCTPLMHALLSKSDEMASLLM 573
            +LAA+      K  R++A    +  G+ +   K ++   A +I+ED V A  +   + ++FP+I  G+I+T++   A    E++   +IL  ++ +  PH LEF RYD + N  + +WESL+E+R QGK+V D R +     + A  RG    +   L R   +D  D+++CT   HA  +   E   LL+
Sbjct:  155 LLAAQRMLARAKEARDEAFKAQLAAGRELDEAKEKERALADQISEDQVEADSRGVGISELFPNISPGFIVTRVNRSAT---ENLDFPDILTVIEESKPPHELEFRRYDYRQNMLSGRWESLQELRAQGKFVEDPRVKQQL-FVDAGRRGDVVDLDRSLVRGMNVDASDQSQCTAFHHACANGHFEAMQLLL 341
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig985.23957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LNE8_ECTSI3.170e-18055.45Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A836CC25_9STRA5.960e-1537.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1XWC5_9STRA1.690e-1439.26Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2S5Z2_9STRA1.050e-1330.89Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig985contigP-canaliculata_contig985:156..5975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score530.8
Seed ortholog evalue6.2e-148
Seed eggNOG ortholog2880.D8LNE8
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons9
Model size1344
Cds size1344
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817346.2401226-CDS-P-canaliculata_contig985:155..4221622817346.2401226-CDS-P-canaliculata_contig985:155..422Pelvetia canaliculata dioeciousCDSP-canaliculata_contig985 156..422 -
1693495237.3566105-CDS-P-canaliculata_contig985:155..4221693495237.3566105-CDS-P-canaliculata_contig985:155..422Pelvetia canaliculata dioeciousCDSP-canaliculata_contig985 156..422 -
1622817346.2524228-CDS-P-canaliculata_contig985:632..7151622817346.2524228-CDS-P-canaliculata_contig985:632..715Pelvetia canaliculata dioeciousCDSP-canaliculata_contig985 633..715 -
1693495237.3703842-CDS-P-canaliculata_contig985:632..7151693495237.3703842-CDS-P-canaliculata_contig985:632..715Pelvetia canaliculata dioeciousCDSP-canaliculata_contig985 633..715 -
1622817346.2662578-CDS-P-canaliculata_contig985:905..10651622817346.2662578-CDS-P-canaliculata_contig985:905..1065Pelvetia canaliculata dioeciousCDSP-canaliculata_contig985 906..1065 -
1693495237.3803744-CDS-P-canaliculata_contig985:905..10651693495237.3803744-CDS-P-canaliculata_contig985:905..1065Pelvetia canaliculata dioeciousCDSP-canaliculata_contig985 906..1065 -
1622817346.2771063-CDS-P-canaliculata_contig985:1560..17171622817346.2771063-CDS-P-canaliculata_contig985:1560..1717Pelvetia canaliculata dioeciousCDSP-canaliculata_contig985 1561..1717 -
1693495237.396652-CDS-P-canaliculata_contig985:1560..17171693495237.396652-CDS-P-canaliculata_contig985:1560..1717Pelvetia canaliculata dioeciousCDSP-canaliculata_contig985 1561..1717 -
1622817346.2877676-CDS-P-canaliculata_contig985:2494..26611622817346.2877676-CDS-P-canaliculata_contig985:2494..2661Pelvetia canaliculata dioeciousCDSP-canaliculata_contig985 2495..2661 -
1693495237.4101126-CDS-P-canaliculata_contig985:2494..26611693495237.4101126-CDS-P-canaliculata_contig985:2494..2661Pelvetia canaliculata dioeciousCDSP-canaliculata_contig985 2495..2661 -
1622817346.298645-CDS-P-canaliculata_contig985:2893..29921622817346.298645-CDS-P-canaliculata_contig985:2893..2992Pelvetia canaliculata dioeciousCDSP-canaliculata_contig985 2894..2992 -
1693495237.4224613-CDS-P-canaliculata_contig985:2893..29921693495237.4224613-CDS-P-canaliculata_contig985:2893..2992Pelvetia canaliculata dioeciousCDSP-canaliculata_contig985 2894..2992 -
1622817346.311999-CDS-P-canaliculata_contig985:3887..40341622817346.311999-CDS-P-canaliculata_contig985:3887..4034Pelvetia canaliculata dioeciousCDSP-canaliculata_contig985 3888..4034 -
1693495237.4342697-CDS-P-canaliculata_contig985:3887..40341693495237.4342697-CDS-P-canaliculata_contig985:3887..4034Pelvetia canaliculata dioeciousCDSP-canaliculata_contig985 3888..4034 -
1622817346.3256137-CDS-P-canaliculata_contig985:4177..42461622817346.3256137-CDS-P-canaliculata_contig985:4177..4246Pelvetia canaliculata dioeciousCDSP-canaliculata_contig985 4178..4246 -
1693495237.4462423-CDS-P-canaliculata_contig985:4177..42461693495237.4462423-CDS-P-canaliculata_contig985:4177..4246Pelvetia canaliculata dioeciousCDSP-canaliculata_contig985 4178..4246 -
1622817346.3387625-CDS-P-canaliculata_contig985:5780..59751622817346.3387625-CDS-P-canaliculata_contig985:5780..5975Pelvetia canaliculata dioeciousCDSP-canaliculata_contig985 5781..5975 -
1693495237.4574497-CDS-P-canaliculata_contig985:5780..59751693495237.4574497-CDS-P-canaliculata_contig985:5780..5975Pelvetia canaliculata dioeciousCDSP-canaliculata_contig985 5781..5975 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig985.23957.1prot_P-canaliculata_contig985.23957.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig985 156..5975 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig985.23957.1

>prot_P-canaliculata_contig985.23957.1 ID=prot_P-canaliculata_contig985.23957.1|Name=mRNA_P-canaliculata_contig985.23957.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=448bp
ILAAKAQHDLVKAKREQAQIEIVNHGKIVATLKREDVDAAGRITEDHVYA
YDQNKFLGQIFPSIQVGYIITKLFGVANLPLEDVPLQEILAELKAAPRPH
TLEFMRYDKKFNRSTLKWESLEEVRRQGKYVRDARDEMGTPLMVAVIRGA
TTSVRWLLERDAMLDVLDRARCTPLMHALLSKSDEMASLLMDHPVTLRAT
DVQWGWTALHYAGHVGMVTVAESLLDSLNSKTINLGKQIGQTPLDVARKG
HQLRTTLLLETFLRKEPAHEVTADGGVHIWQGSHCAAHPVWASDQGFQCV
ITIADPRFSEKELGWLDDDEEIDHFRIDAEVVDDDDTSKRPWNNRAQHTR
AITNFLDMAVRRRRKVLIHCRNGKSTSVAVVAVYRLLKHGVGVRSTLSAV
ASARGDSMDRSPPMAVGLQQLQEDFAREKKKRLEQRARLTPILSLGF*
back to top

mRNA from alignment at P-canaliculata_contig985:156..5975-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig985.23957.1 ID=mRNA_P-canaliculata_contig985.23957.1|Name=mRNA_P-canaliculata_contig985.23957.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=5820bp|location=Sequence derived from alignment at P-canaliculata_contig985:156..5975- (Pelvetia canaliculata dioecious)
ATTCTTGCGGCGAAGGCGCAGCACGATCTCGTCAAAGCCAAACGAGAGCA
AGCACAGATCGAGATCGTTAATCATGGTAAGATTGTGGCCACCCTCAAGC
GAGAGGATGTCGATGCAGCGGGAAGAATCACAGAAGATCACGTCTACGCA
TACGATCAGAACAAGTTTCTTGGTCAGATTTTTCCGAGCATTCAGGTAAC
TAATAAGTCAACATGAGGAATGCGAACGTTCATATTCATTCTGAGTCGAG
ATTGTTTCTTCTAAGCGGGCTCTGTGATGCGATCTCTTCACGAAATAATG
TACGCTGGCTGGTCTAAGAGGTAAACTCTCGACTCCAGACGCTATTGTCT
ATAGGGTCCCGGAGACCCGCTTCTTCTTCCGTTCCGAGAGAAGAGTCCCT
CTCCTCTTGCTGGTGCCAGCCGAGTTCCTGTTTACTTGTATCCTGTTGAA
TTTAATCGTCTTTCCCCCAAAGATTTCCTTACTCTCCTCTCAAGTCTTGT
TCCCCTCGAGTATTTGATCCTCGCACGGGCCCTCTACATTCTCGGACACT
TCATCGACCCCTATGGAGTCCATGGGGGTCCATGGAGCTCCGTGGGCCAC
GGAGACTCCATTGAAGTTTTCTGGGGTCGATGGAGCTCCACGTGGTAGGT
CCTCAAAGAGCTCCACGGTGGAATTTGTGTTGCCCTCATGAAGCTCCATG
GACGGTGGACGCTCCATAGCGGAGTGTTTTGGATTTCGTCCAAAGAGCTC
CATGGCGGAGTTTTGTATAGGTCCATGCATAATTCCAAAAGGCTCCAGGG
AAACCTCCATGGACACTCCATGGAGAAATCTTGAAAGTTCATGCAGACTC
TGTCGGAGTTGATGGGCCTCCATGAAGATGCAAAGAACTCCGCGAAGCTC
GATCGAGTTTCCCGTTGAAGTATATGGAGATTCATGGAGTTCCAACTCCA
TGACGCGCCTGACACTGTTGGACGCCCCCAGTACGACAGAGACTCGAACC
CAAACGATCGAAAAAAATGAAGTCGGAAATTTACCACATATTATAACAGT
CAGCCCGATACGAGTTAGAACAAGTAGCGCTGAATACTCTAGGTGGTTCT
TTTCCAACTTAAGTTAACAACAAATCTGACACGTAGCTTAGGTAATACGA
CTACTGATTGTTCAAAACCTCTACTGTACTGCAGACGCAGAAACGACCGC
TAAACAGCCACTGGATCATTGGTTGAAACTCGCCGACTTTCCTCCACATC
TTGGAGCGATGGTAGCTATAATAGTAATATTATCAGGGAATGCAAATATT
TTAATTCTGAATCCAAACCTATCTTCGTTCAATCACGACCAAATATATTA
GTCTATGTTGAAGAAGACATTTCGCTTGATTGAGCACTGTTGCCAACGAT
TTATTCACGTTCTGAGAGTGGATAGCATGATCAGAAGATCTACGAGATAG
ACGGTCGTTTGTTCGAGACGTTTGTTACTCGATCATTGTATGTGCAATAT
TTCAACTCCTTCTGATATTCCACCATCAAGATCGCATCATTAACGATGTC
CAACTTTGAACGGCCGAATCGAAACCACCGGCCACGACTAGTTGATGAAT
TTGGGGCCGAATACTGTCCACCGTCCAATCACAGCCAGATGACACCGAGG
ATGCATGTCGTGCACAGACTAACACAAGGAGCTACCGTACGCGATGAATC
GTCCTCCGCATGATGTCGAGAGACACCAGGTTGGATACATCATTACGAAG
CTCTTCGGTGTGGCCAATCTTCCGCTCGAAGACGTCCCGCTCCAAGAGGT
TAGCGTTGTGGAAGATTGATGCATGGAGGTAGCCGCGGAGGTTACAAATA
GAAACCAAAGATGTGCAATCATAAAGCATCAAGGCCGTGTTGCCTCTGAG
AAAGTCAAACCGACAGATTACGCGTGACTCTTTGTTGTTAGATACTTGCT
GAGCTTAAGGCTGCTCCGCGTCCTCATACGCTAGAGTTCATGCGCTACGA
CAAGAAGTTCAACCGCTCAACGCTAAAGTGGGAATCTCTCGAAGAGGTCC
GCAGACAGGGAAAGTACGTGCGAGATGCCCGAGACGAGGTAAAGAAAACG
ACTCTCACACGCCATATAGTTACGTGGATGGGACTTTTCAAGGCAGTGCT
ATGGTTTTGTTAAAACTTCGAAGTCGCTAAGTCACCATACCTATGAGCAG
TGCCATTTCTATCAGTTCTGTTTCCTGCTATCGGTACAATCTGTCTAATC
GACGTTGTGTATGTATTTGCGCGACACGAGGTTTTAGCAGAGGCGCAAGC
CGATTGCATGCATAGGGGTATACACTTGCAAGAAACGTGCTCGTTCTCCT
GCAGCACTTGTTGTGCCGATTTGTTTGATCCAAGTGTGTTCTCCCACCTC
TCTCCTGCAGAATTATTTTTTTGTGAAGGCCTGCGCAGAAGGCGATCTCG
ACACATTGCGGAATATCTTCGACCGCGGGGAGGACATAGAGTGATCCGAT
ATGCAAGGTAACACTGGCCTGCATGTCGCGGCGGCGTCATCTAATATTGC
CGTGATGGAGTTGTTGCTACAGCACAAGGCCAACATGGAAGCCAGGAACC
AGAACGTGAGAAAGTAAGGCAGCTCCAGAAAGGTCATTCTGCATGAAAGG
AAGGACAAATCGAGTACTGGTACATTTTTCTTTCCAGAAACTCAAGGGCA
AAACCCCCCGAGACCTGCTTCAATGTCTGGCACAGTGTGAAGGACTACGG
CGTGGAGACTACCTAGCGATATCAACTCTGTAATCCTGTATCTCCTCGAT
ACATCTCGACGCAATCTCGTGTGCGGGAGGCTTGGGGACGAGGATGTGCT
GAATCATGCATGCGCCTCCATGTCGTGATGACCGGTTTTGCATGAAGAAG
TATCCGAATTTATATTACACTCCATGGTTCGCAAAACTGTCTCCAAATGC
CTTCATCGCCGCTTCTTAATCCAAGTGGTGCAGATGGGAACCCCGCTAAT
GGTTGCTGTGATACGGGGGGCCACGACCTCCGTGCGTTGGTTGCTCGAGA
GGGACGCAATGCTCGACGTCTTGGACAGAGCGGTGGGATTGCGTGCTAGA
GGAAAGGGCCGACCTCTCTTGGTATCCTCTTGTTCACACTGGTATGAAGC
TCCAGCATACACCTCGTTCTTACGAAGGGGTGTGTATCACTAACCCTTTT
GCACACGCTCGTGCACGCAAACAATTGCGCCCCTCCGGGCCAAGGTTGCG
CTCCTCCTTACAATCACCCCACTTGGACCACGTCGTGCACCTTCCACACC
CGCGTTTTTTTCAGAGATGCACACCGCTGATGCACGCCTTATTGTCGAAG
AGTGATGAGATGGCCTCGCTGTTAATGGACCACCCTGTGACGCTAAGAGC
GACGGACGTGCAGTGGGGCTGGACTGCACTTCACTACGCGGGGCACGTAG
GCATGGTGACGGTGGCAGAGAGTCTGCTTGAGTAAAGGGCCTCGCCATAT
GCTACAAGCAAGGCAAGTATACATTTCGTACGTCGAGTCTAACGACGTCA
GGTGACACGGAGGGGGGCAATACCTGGTAGCTAGCAGTACACAGAAGTCG
CGGAAATGAAATATATATATAATAATCTTGACCTCCAACTGATCCGCGCA
CACGGCATCTCTGTTGCGATGGAGATCATCATGACAGTTATCATCATGAC
GATAGTTGTCGTGTCGGTTGTCTTGTCGTTCACGTACGCGACGACTGTTG
TCACATAGCATTCATGGTCGCCATAACGATTTTCATGATAGCTTGCGGTA
TAATATCGAACCCCGTCAGTGTTCGAGCACAAGACCGAAGCTAACCAGAC
TCCACCCGCTTGACATCAAGTTTGAGAAGAGAACATAACATGGTCCAACT
CAAAGCGAGACGTTTCTCGACAGTCTGAAGGCAGTCTACGAACTTTGCCA
CGGCAGTAGCCTGCTATTTCTTCTACTACAGGCGTTACGCTGTGCAGGGA
TATAGAATCAAGCGAATGGAAACGGAACCGCGGCACGTGCATCTGCAGTT
TCCATGTGATGCGCACCACATGATTGGCGTGGGTATCCTGTTTACGGAAA
AGAGAATCCCAAAGCTGGTTCCCCAGGCAGCTTCAGCGTTCAAGTTTGGA
GGTTTGGCTAAAATATTACACTGCCCTTCCCAGATTACCACGATGCACCG
CACACTCGAAACAGTTCACAAGGACCTTTCCCATCAGATGAAACGTCCCC
GGTGCTAGCTCACTCAATTCTAAAACTATAAACTTGGGAAAGCAGATCGG
CCAAACGCCCCTCGACGTGGCACGAAAAGGACACCAACTTAGGACAACTT
TGCTGCTCGAGACATTCTTGAGAAAAGAACCGGCGCACGAGGTCACCGCG
GACGGCGGGGTGCATGTGCGAGAATCCTTCACAGGGGAAGGGGACTGACC
GAGGGGTTCTCATTGCTGTGTTGTTAAGGAGCTAAAAACGCCACATCTTT
TGTTGCGTTCATTCGTCTTGGAATAACTTTCGTGATTGGATCCGTGCGCT
AGGAAGCCTTTACCCATGCGTAGGTCATTTCGTGACACATCTGTCTTACG
CACCATGCGCATCGATTCTAGGTTATCTGTTGGCCTTTTCTACTATGTAT
CGATATTACTGCAACTCAACACCTTCGGGTTCTAGGAAACGTTCTATTCT
AGCAGCAGGGGCATGCGCACCACTGTCTATGAATCGTAATTGTTGACCCT
CTGTCAAACCGCTGGTACAGGAGGACTCCGGCTAACGACCGATGATTGGC
ACTCCGATGCCCGCTACGGTTTGAAGGTTATAGTCCAATGTCAAACTCCA
TTGGAGAGAGCATTCCGACCTCCACCATGCCCACGTCTTTACCGCCTCTC
ATCTCTCCAGATATGGCAAGGGTCTCACTGCGCAGCGCATCCGGTTTGGG
CATCCGATCAGGGTTTTCAATGTGTGATCACCATCGCCGACCCTCGGTTT
TCGGAAAAGGAGCTAGGCTGGCTCGACGACGATGAGGAGATTGATCACTT
CAGGATAGACGCTGAGGTGGGTACTGAAGCAAAATATCAACATTCTACGT
TCTTGCGAAAGTGAAGTCGCCAGATGCATTGTCCTGGATATTTTGACTGC
TGAGACACTGCCAGATTTGCTAGGGGAAAGAACGGGAACCTATCGCAAGT
TCTTGCTCTTTTCTTGGTACAGGTTGACCTTGATGCTCCGTCTTCCCTAC
ACCGGTAAAGTGGATGACGACGACACATCGAAACGGCCATGGAATAACCG
CGCGCAGCACACCAGAGCTATCACCAACTTCTTAGATATGGCGGTGAGGG
TGAGATGAACTGCGGCAGCATACTAACAAATTCGAATCCAAGCTTACAGT
TGAGGCACACCCTTTGCCATGCACCACGCACATATTTTCAGTAAGATCTG
AGCCATGGAGCGTTATGTTTCCAGGTAAAAAAAAAGGGAGTACCGACAGC
GCCAGCTATAGACTACGCCCACCACGACCATTTTGAATGAGGTTGCTTTA
CAGGTCCGAAGAAGAAGAAAAGTATTGATCCATTGCAGAAATGGAAAGAG
CACATCCGTTGCCGTCGTGGCCGTCTATCGCCTCCTCAAACACGGCGTGG
GGGTAAGGAGCACCCTCAGTGCTGTCGCCAGCGCGCGTGGAGATTCGATG
GATCGCTCCCCTCCCATGGCAGTCGGGTTGCAGCAGCTACAGGAGGATTT
TGCTCGAGAGAAAAAGAAGCGCCTCGAGCAGCGAGCGCGTTTAACGCCTA
TCTTGTCGCTTGGCTTCTAG
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig985:156..5975-

>mRNA_P-canaliculata_contig985.23957.1 ID=mRNA_P-canaliculata_contig985.23957.1|Name=mRNA_P-canaliculata_contig985.23957.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2688bp|location=Sequence derived from alignment at P-canaliculata_contig985:156..5975- (Pelvetia canaliculata dioecious)
ATTCTTGCGGCGAAGGCGCAGCACGATCTCGTCAAAGCCAAACGAGAGCA
AGCACAGATCGAGATCGTTAATCATGGTAAGATTGTGGCCACCCTCAAGC
GAGAGGATGTCGATGCAGCGGGAAGAATCACAGAAGATCACGTCTACGCA
TACGATCAGAACAAGTTTCTTGGTCAGATTTTTCCGAGCATTCAGATTCT
TGCGGCGAAGGCGCAGCACGATCTCGTCAAAGCCAAACGAGAGCAAGCAC
AGATCGAGATCGTTAATCATGGTAAGATTGTGGCCACCCTCAAGCGAGAG
GATGTCGATGCAGCGGGAAGAATCACAGAAGATCACGTCTACGCATACGA
TCAGAACAAGTTTCTTGGTCAGATTTTTCCGAGCATTCAGGTTGGATACA
TCATTACGAAGCTCTTCGGTGTGGCCAATCTTCCGCTCGAAGACGTCCCG
CTCCAAGAGGTTGGATACATCATTACGAAGCTCTTCGGTGTGGCCAATCT
TCCGCTCGAAGACGTCCCGCTCCAAGAGATACTTGCTGAGCTTAAGGCTG
CTCCGCGTCCTCATACGCTAGAGTTCATGCGCTACGACAAGAAGTTCAAC
CGCTCAACGCTAAAGTGGGAATCTCTCGAAGAGGTCCGCAGACAGGGAAA
GTACGTGCGAGATGCCCGAGACGAGATACTTGCTGAGCTTAAGGCTGCTC
CGCGTCCTCATACGCTAGAGTTCATGCGCTACGACAAGAAGTTCAACCGC
TCAACGCTAAAGTGGGAATCTCTCGAAGAGGTCCGCAGACAGGGAAAGTA
CGTGCGAGATGCCCGAGACGAGATGGGAACCCCGCTAATGGTTGCTGTGA
TACGGGGGGCCACGACCTCCGTGCGTTGGTTGCTCGAGAGGGACGCAATG
CTCGACGTCTTGGACAGAGCGATGGGAACCCCGCTAATGGTTGCTGTGAT
ACGGGGGGCCACGACCTCCGTGCGTTGGTTGCTCGAGAGGGACGCAATGC
TCGACGTCTTGGACAGAGCGAGATGCACACCGCTGATGCACGCCTTATTG
TCGAAGAGTGATGAGATGGCCTCGCTGTTAATGGACCACCCTGTGACGCT
AAGAGCGACGGACGTGCAGTGGGGCTGGACTGCACTTCACTACGCGGGGC
ACGTAGGCATGGTGACGGTGGCAGAGAGTCTGCTTGAAGATGCACACCGC
TGATGCACGCCTTATTGTCGAAGAGTGATGAGATGGCCTCGCTGTTAATG
GACCACCCTGTGACGCTAAGAGCGACGGACGTGCAGTGGGGCTGGACTGC
ACTTCACTACGCGGGGCACGTAGGCATGGTGACGGTGGCAGAGAGTCTGC
TTGACTCACTCAATTCTAAAACTATAAACTTGGGAAAGCAGATCGGCCAA
ACGCCCCTCGACGTGGCACGAAAAGGACACCAACTTAGGACAACTTTGCT
GCTCGAGACATTCTTGAGAAAAGAACCGGCGCACGAGGTCACCGCGGACG
GCGGGGTGCATCTCACTCAATTCTAAAACTATAAACTTGGGAAAGCAGAT
CGGCCAAACGCCCCTCGACGTGGCACGAAAAGGACACCAACTTAGGACAA
CTTTGCTGCTCGAGACATTCTTGAGAAAAGAACCGGCGCACGAGGTCACC
GCGGACGGCGGGGTGCATATATGGCAAGGGTCTCACTGCGCAGCGCATCC
GGTTTGGGCATCCGATCAGGGTTTTCAATGTGTGATCACCATCGCCGACC
CTCGGTTTTCGGAAAAGGAGCTAGGCTGGCTCGACGACGATGAGGAGATT
GATCACTTCAGGATAGACGCTGAGGTGGATATGGCAAGGGTCTCACTGCG
CAGCGCATCCGGTTTGGGCATCCGATCAGGGTTTTCAATGTGTGATCACC
ATCGCCGACCCTCGGTTTTCGGAAAAGGAGCTAGGCTGGCTCGACGACGA
TGAGGAGATTGATCACTTCAGGATAGACGCTGAGGTGGTGGATGACGACG
ACACATCGAAACGGCCATGGAATAACCGCGCGCAGCACACCAGAGCTATC
ACCAACTTCTTAGATATGGCGTGGATGACGACGACACATCGAAACGGCCA
TGGAATAACCGCGCGCAGCACACCAGAGCTATCACCAACTTCTTAGATAT
GGCGGTCCGAAGAAGAAGAAAAGTATTGATCCATTGCAGAAATGGAAAGA
GCACATCCGTTGCCGTCGTGGCCGTCTATCGCCTCCTCAAACACGGCGTG
GGGGTAAGGAGCACCCTCAGTGCTGTCGCCAGCGCGCGTGGAGATTCGAT
GGATCGCTCCCCTCCCATGGCAGTCGGGTTGCAGCAGCTACAGGAGGATT
TTGCTCGAGAGAAAAAGAAGCGCCTCGAGCAGCGAGCGCGTTTAACGCCT
ATCTTGTCGCTTGGCTTCTAGGTCCGAAGAAGAAGAAAAGTATTGATCCA
TTGCAGAAATGGAAAGAGCACATCCGTTGCCGTCGTGGCCGTCTATCGCC
TCCTCAAACACGGCGTGGGGGTAAGGAGCACCCTCAGTGCTGTCGCCAGC
GCGCGTGGAGATTCGATGGATCGCTCCCCTCCCATGGCAGTCGGGTTGCA
GCAGCTACAGGAGGATTTTGCTCGAGAGAAAAAGAAGCGCCTCGAGCAGC
GAGCGCGTTTAACGCCTATCTTGTCGCTTGGCTTCTAG
back to top