mRNA_P-canaliculata_contig985.23957.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig985.23957.1 vs. uniprot
Match: D8LNE8_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNE8_ECTSI) HSP 1 Score: 527 bits (1357), Expect = 3.170e-180 Identity = 285/514 (55.45%), Postives = 350/514 (68.09%), Query Frame = 1 Query: 1 ILAAKAQHDLVKAKREQAQIEIVNHGKIVATLKREDVDAAGRITEDHVYAYDQNKFLGQIFPSIQVGYIITKLFGVANLPLEDVPLQEILAELKAAPRPHTLEFMRYDKKFNRSTLKWESLEEVRRQGKYVRDARDEMGTPLMVAVIRGATTSVRWLLERDAMLDVLDRARCTPLMH-------------------------------------------------------------------ALLSKSDEMASLLMDHPVTLRATDVQWGWTALHYAGHVGMVTVAESLLDSLNSKTINLGKQIGQTPLDVARKGHQLRTTLLLETFLRKEPAHEVTADGGVHIWQGSHCAAHPVWASDQGFQCVITIADPRFSEKELGWLDDDEEIDHFRIDAEVVDDDDTSKRPWNNRAQHTRAITNFLDMAVRRRRKVLIHCRNGKSTSVAVVAVYRLLKHGVGVRSTLSAVASARGDSMDRSPPMAVGLQQLQEDFAREKKKRLEQRARLTPILSLGF 1341
ILAAK Q+DLVK REQAQ +++ HG+ +A LKRE+V+AA +IT+DHV+A D+ K LG IFPSI+VG+IIT+LFG+ NL LEDVP +E+L ELKAAPRPHTLEF+RYD FNR TLKWE+LEEVR+QGKYVRDAR+E + A G ++ L+R ++ D T MH A+LSKS+ MA+L MD+ V L+ATDVQWGWTALH A HVGMV V E+LL S +IGQTPLDVA + Q++TT LLE FLR EPAHEV A+ G +IWQGSH AAHPVWASDQGF+C+++I DPRF +K+LGWL+DD ++ H R++AEV DD+DTS R WNN AQHTR I +FL AVRRR+K+L+HCRNG+STSVA++ YRLLKHGVGVR+TLS +A ARG+SMD SP MA GLQQLQEDFA+EK+KRL +RAR PILSLGF
Sbjct: 136 ILAAKEQYDLVKVDREQAQADVLAHGRTMAKLKREEVEAAEKITDDHVHACDRGKSLGDIFPSIRVGFIITRLFGIVNLNLEDVPFEEVLLELKAAPRPHTLEFLRYDMNFNRLTLKWETLEEVRQQGKYVRDAREER-LYFVKACAEGDIDRLQIRLDRGEDVESTDLQGNTG-MHVAAANSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAILSKSEVMAALFMDYSVALQATDVQWGWTALHCAAHVGMVKVVENLLGKRASPYAE--SKIGQTPLDVASRARQIKTTALLEAFLRAEPAHEVIAEAGANIWQGSHAAAHPVWASDQGFECILSIVDPRFPDKKLGWLEDDGDVRHLRVEAEV-DDEDTSPRAWNNIAQHTRVIISFLYTAVRRRKKILVHCRNGRSTSVAMLTAYRLLKHGVGVRNTLSTIARARGESMDLSPAMAAGLQQLQEDFAKEKEKRLVERARTAPILSLGF 644
BLAST of mRNA_P-canaliculata_contig985.23957.1 vs. uniprot
Match: A0A836CC25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC25_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 5.960e-15 Identity = 45/120 (37.50%), Postives = 76/120 (63.33%), Query Frame = 1 Query: 64 IVNHGKIVATLKREDVDAAGRITEDHVYAYDQNKFLGQIFPSIQVGYIITKLF------GVANLPLEDVPLQEILAELKAAPRPHTLEFMRYDKKFNRSTLKWESLEEVRRQGKYVRDAR 405
++ HG+++A ++ + AA +T+DHV A ++ + +G +FP++Q+G+++ +LF G A + LE +P Q +L + AAPRPHTL RYD + + T WESL +RR+G + D R
Sbjct: 51 LLAHGRVLAERRQRERAAAAAVTDDHVTAAERVQGVGNLFPAVQMGFVVAQLFDGGGGGGEAAVALEALPFQAVLDRIGAAPRPHTLALARYDYRRSGLTGAWESLAALRRRGCLLADPR 170
BLAST of mRNA_P-canaliculata_contig985.23957.1 vs. uniprot
Match: A0A7S1XWC5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XWC5_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 1.690e-14 Identity = 53/135 (39.26%), Postives = 83/135 (61.48%), Query Frame = 1 Query: 28 LVKAKREQAQIEIVNHGKIVATLKRE-------DVDAAGRITEDHVYAYDQNKFLGQIFPSIQVGYIITKLFGVANLPLEDVPLQEILAELKAAPRPHTLEFMRYDKKFNRSTLKWESLEEVRRQGKYVRDARDE 411
LV+ + +A+ E+ +IV ++RE + +AA RITEDHV A ++ L ++FP+IQVG+ ITK+ GV P ED P +I L+ + PH++EF RYD + ++ W +L+E+R +G YV DAR +
Sbjct: 154 LVEQEVIEAKAELERRSEIVMRVQREMDDTIQLEKEAAARITEDHVTALEEGCGLPELFPTIQVGFCITKINGV---PCEDCPFGDIFDLLRDSISPHSVEFRRYDYRRVGASADWLTLQELRDRGCYVEDARHQ 285
BLAST of mRNA_P-canaliculata_contig985.23957.1 vs. uniprot
Match: A0A7S2S5Z2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5Z2_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 1.050e-13 Identity = 59/191 (30.89%), Postives = 100/191 (52.36%), Query Frame = 1 Query: 1 ILAAKAQHDLVKAKREQAQIEIVNHGKIVATLKREDVDAAGRITEDHVYAYDQNKFLGQIFPSIQVGYIITKLFGVANLPLEDVPLQEILAELKAAPRPHTLEFMRYDKKFNRSTLKWESLEEVRRQGKYVRDARDEMGTPLMVAVIRGATTSVRWLLERDAMLDVLDRARCTPLMHALLSKSDEMASLLM 573
+LAA+ K R++A + G+ + K ++ A +I+ED V A + + ++FP+I G+I+T++ A E++ +IL ++ + PH LEF RYD + N + +WESL+E+R QGK+V D R + + A RG + L R +D D+++CT HA + E LL+
Sbjct: 155 LLAAQRMLARAKEARDEAFKAQLAAGRELDEAKEKERALADQISEDQVEADSRGVGISELFPNISPGFIVTRVNRSAT---ENLDFPDILTVIEESKPPHELEFRRYDYRQNMLSGRWESLQELRAQGKFVEDPRVKQQL-FVDAGRRGDVVDLDRSLVRGMNVDASDQSQCTAFHHACANGHFEAMQLLL 341 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig985.23957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig985.23957.1 >prot_P-canaliculata_contig985.23957.1 ID=prot_P-canaliculata_contig985.23957.1|Name=mRNA_P-canaliculata_contig985.23957.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=448bp ILAAKAQHDLVKAKREQAQIEIVNHGKIVATLKREDVDAAGRITEDHVYAback to top mRNA from alignment at P-canaliculata_contig985:156..5975- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig985.23957.1 ID=mRNA_P-canaliculata_contig985.23957.1|Name=mRNA_P-canaliculata_contig985.23957.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=5820bp|location=Sequence derived from alignment at P-canaliculata_contig985:156..5975- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig985:156..5975- >mRNA_P-canaliculata_contig985.23957.1 ID=mRNA_P-canaliculata_contig985.23957.1|Name=mRNA_P-canaliculata_contig985.23957.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2688bp|location=Sequence derived from alignment at P-canaliculata_contig985:156..5975- (Pelvetia canaliculata dioecious)back to top |