Homology
BLAST of mRNA_P-canaliculata_contig9849.23955.1 vs. uniprot
Match: A0A6H5J855_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J855_9PHAE) HSP 1 Score: 56.6 bits (135), Expect = 1.300e-8 Identity = 27/33 (81.82%), Postives = 31/33 (93.94%), Query Frame = 1 Query: 1 VIEEGKHDELLERKGAYANLMTTQVQSFSTIAN 99
VIEEGKHDELLER+GAY NLM+TQV+SFSTI +
Sbjct: 181 VIEEGKHDELLEREGAYYNLMSTQVRSFSTIGD 213
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | no signal peptide or anchor |
| Exons | 1 |
| Model size | 102 |
| Cds size | 102 |
| Stop | 1 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817346.1703897-CDS-P-canaliculata_contig9849:11354..11456 | 1622817346.1703897-CDS-P-canaliculata_contig9849:11354..11456 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig9849 11355..11456 + |
| 1693495237.3339548-CDS-P-canaliculata_contig9849:11354..11456 | 1693495237.3339548-CDS-P-canaliculata_contig9849:11354..11456 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig9849 11355..11456 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9849.23955.1 >prot_P-canaliculata_contig9849.23955.1 ID=prot_P-canaliculata_contig9849.23955.1|Name=mRNA_P-canaliculata_contig9849.23955.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=34bp
VIEEGKHDELLERKGAYANLMTTQVQSFSTIAN* back to topmRNA from alignment at P-canaliculata_contig9849:11355..11456+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig9849.23955.1 ID=mRNA_P-canaliculata_contig9849.23955.1|Name=mRNA_P-canaliculata_contig9849.23955.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=102bp|location=Sequence derived from alignment at P-canaliculata_contig9849:11355..11456+ (Pelvetia canaliculata dioecious)
GTGATCGAGGAAGGCAAGCACGACGAGCTGTTGGAGCGCAAGGGCGCCTA
CGCGAACCTCATGACCACTCAGGTGCAATCGTTCTCCACGATCGCCAACT
AA back to topCoding sequence (CDS) from alignment at P-canaliculata_contig9849:11355..11456+ >mRNA_P-canaliculata_contig9849.23955.1 ID=mRNA_P-canaliculata_contig9849.23955.1|Name=mRNA_P-canaliculata_contig9849.23955.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=204bp|location=Sequence derived from alignment at P-canaliculata_contig9849:11355..11456+ (Pelvetia canaliculata dioecious)
GTGATCGAGGAAGGCAAGCACGACGAGCTGTTGGAGCGCAAGGGCGCCTA
CGCGAACCTCATGACCACTCAGGTGCAATCGTTCTCCACGATCGCCAACT
AAGTGATCGAGGAAGGCAAGCACGACGAGCTGTTGGAGCGCAAGGGCGCC
TACGCGAACCTCATGACCACTCAGGTGCAATCGTTCTCCACGATCGCCAA
CTAA back to top
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