mRNA_P-canaliculata_contig9844.23947.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9844.23947.1
Unique NamemRNA_P-canaliculata_contig9844.23947.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig9844.23947.1 vs. uniprot
Match: D8LFY4_ECTSI (Elongation factor G, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFY4_ECTSI)

HSP 1 Score: 385 bits (990), Expect = 5.510e-127
Identity = 196/226 (86.73%), Postives = 211/226 (93.36%), Query Frame = 1 
Query:    1 VAYREAITKPAEVDYTHKKQSGGSGQFARVKIKFEPSDMDEEGATADFTFESEIKGGTVPKEYIPG---GVESVLSNGVLAGFPVLGMKAILVDGAYHDVDSSVMAFEIAGRAAAREGLRKAGARLMEPVMQVDVITPEEYMGDVIGDINARRGQVVELTDRNGLKQVESTVPLANMFQYVSTLRSATKGRANYSMQLLKYDYVPQNVEKEVVAKYGSGKKPVEDD 669
            VAYREAIT+PAEVDYTHKKQSGGSGQFARVK+KF P+DMDE+GAT+DF F SEIKGG VPKEYIPG   GVESVLSNGVLAGFPVLGMKA+LVDGA+HDVDSSVMAFEIAGRAA REGLRKAGARLMEP+MQVD+ITPEEYMGDVIGDIN+RRG +VEL+DRNGLKQVESTVPLANMFQYVSTLRSATKGRANYSMQLLKYD+VP NVEKEVVAKYG  +   E+D
Sbjct:  553 VAYREAITRPAEVDYTHKKQSGGSGQFARVKVKFVPADMDEDGATSDFEFVSEIKGGAVPKEYIPGVQKGVESVLSNGVLAGFPVLGMKAVLVDGAFHDVDSSVMAFEIAGRAACREGLRKAGARLMEPIMQVDIITPEEYMGDVIGDINSRRGSIVELSDRNGLKQVESTVPLANMFQYVSTLRSATKGRANYSMQLLKYDFVPPNVEKEVVAKYGMNRADDEED 778
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BLAST of mRNA_P-canaliculata_contig9844.23947.1 vs. uniprot
Match: A0A836CHR4_9STRA (Elongation factor G, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHR4_9STRA)

HSP 1 Score: 341 bits (874), Expect = 1.090e-109
Identity = 173/226 (76.55%), Postives = 199/226 (88.05%), Query Frame = 1 
Query:    1 VAYREAITKPAEVDYTHKKQSGGSGQFARVKIKFEPSDMDEEGATADFTFESEIKGGTVPKEYIPG---GVESVLSNGVLAGFPVLGMKAILVDGAYHDVDSSVMAFEIAGRAAAREGLRKAGARLMEPVMQVDVITPEEYMGDVIGDINARRGQVVELTDRNGLKQVESTVPLANMFQYVSTLRSATKGRANYSMQLLKYDYVPQNVEKEVVAKYGSGKKPVEDD 669
            VAYREAITK AE+DYTHKKQSGGSGQFARVKI+F P +  +E +  DFTF S+IKGG+VPKEYIPG   G+ESVL+NGVLAGFPVLG+KA LVDGAYHDVDSSVMAFEIAGRAA REGLRKAGARLMEP+M+VDV+TPEEYMGD+IGDIN+RRGQVVE+ DRNGLKQVE+ VPLANMFQYVS LRS +KGRA Y+M L KYD++P NVEKE+ +KY +GK   +D+
Sbjct:  552 VAYREAITKTAEIDYTHKKQSGGSGQFARVKIQFAPVEEGDEASATDFTFVSDIKGGSVPKEYIPGVQKGIESVLANGVLAGFPVLGLKATLVDGAYHDVDSSVMAFEIAGRAATREGLRKAGARLMEPIMKVDVVTPEEYMGDIIGDINSRRGQVVEMIDRNGLKQVEAAVPLANMFQYVSHLRSVSKGRAQYTMVLKKYDFLPANVEKEITSKY-AGKVASDDE 776
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BLAST of mRNA_P-canaliculata_contig9844.23947.1 vs. uniprot
Match: A0A7S1GRX9_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GRX9_CYCTE)

HSP 1 Score: 311 bits (798), Expect = 2.050e-102
Identity = 154/212 (72.64%), Postives = 182/212 (85.85%), Query Frame = 1 
Query:    1 VAYREAITKPAEVDYTHKKQSGGSGQFARVKIKFEPSDMDEEGATADFTFESEIKGGTVPKEYIPG---GVESVLSNGVLAGFPVLGMKAILVDGAYHDVDSSVMAFEIAGRAAAREGLRKAGARLMEPVMQVDVITPEEYMGDVIGDINARRGQVVELTDRNGLKQVESTVPLANMFQYVSTLRSATKGRANYSMQLLKYDYVPQNVEKEV 627
            V+YREAIT PAE+DYTHKKQSGGSGQ+ARVKIKFEP +  +E    DF F+S+IKGG VP+EYIPG   G+ESVL +GV+AG+PVLGMKA LVDGAYHDVDSSVMAFEIAGRAA REGLRKA ARLMEP+MQVDV TPEEYMGD++GDIN+RRG V +L +R  +K + + VPLANMFQYVSTLRS +KGRA+YSM+L  YD+VP N+E+E+
Sbjct:  203 VSYREAITAPAEIDYTHKKQSGGSGQYARVKIKFEPKEFSDEEGAMDFEFQSDIKGGNVPREYIPGVQKGIESVLGSGVIAGYPVLGMKATLVDGAYHDVDSSVMAFEIAGRAATREGLRKAKARLMEPLMQVDVTTPEEYMGDILGDINSRRGLVGDLGERGNVKTISAQVPLANMFQYVSTLRSMSKGRADYSMKLANYDFVPPNIEEEL 414
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BLAST of mRNA_P-canaliculata_contig9844.23947.1 vs. uniprot
Match: A0A7S3LBD3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LBD3_9STRA)

HSP 1 Score: 306 bits (785), Expect = 5.840e-101
Identity = 154/212 (72.64%), Postives = 181/212 (85.38%), Query Frame = 1 
Query:    1 VAYREAITKPAEVDYTHKKQSGGSGQFARVKIKFEPSDMDEEGATADFTFESEIKGGTVPKEYIPG---GVESVLSNGVLAGFPVLGMKAILVDGAYHDVDSSVMAFEIAGRAAAREGLRKAGARLMEPVMQVDVITPEEYMGDVIGDINARRGQVVELTDRNGLKQVESTVPLANMFQYVSTLRSATKGRANYSMQLLKYDYVPQNVEKEV 627
            V+YREAIT  AE++YTHKKQSGGSGQFA++K++F+P DM +E    DF F +EIKGG VPKEYIPG   G+ESVL  GV+AGFPVLG+KA L+DGAYHDVDSSVMAFEIAGRAAAREGLRKA ARLMEP+MQVD+ TPEEYMGD++GDIN+RRG V EL +R  +K + + VPLANMFQYVSTLRS +KGRANYSM+L  YD+VPQNVE E+
Sbjct:  174 VSYREAITASAEIEYTHKKQSGGSGQFAKIKVRFDPKDMADED-NMDFEFVTEIKGGNVPKEYIPGVQKGIESVLGTGVIAGFPVLGLKATLLDGAYHDVDSSVMAFEIAGRAAAREGLRKAKARLMEPLMQVDITTPEEYMGDILGDINSRRGLVGELGERGNVKTISAQVPLANMFQYVSTLRSMSKGRANYSMKLANYDFVPQNVEDEL 384
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BLAST of mRNA_P-canaliculata_contig9844.23947.1 vs. uniprot
Match: A0A1Z5JSH0_FISSO (Elongation factor G, mitochondrial n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSH0_FISSO)

HSP 1 Score: 315 bits (808), Expect = 5.230e-100
Identity = 155/212 (73.11%), Postives = 183/212 (86.32%), Query Frame = 1 
Query:    1 VAYREAITKPAEVDYTHKKQSGGSGQFARVKIKFEPSDMDEEGATADFTFESEIKGGTVPKEYIPG---GVESVLSNGVLAGFPVLGMKAILVDGAYHDVDSSVMAFEIAGRAAAREGLRKAGARLMEPVMQVDVITPEEYMGDVIGDINARRGQVVELTDRNGLKQVESTVPLANMFQYVSTLRSATKGRANYSMQLLKYDYVPQNVEKEV 627
            V+YREAIT+PAE+DYTHKKQSGGSGQ+AR+K+KFEP D++ E    DF F S+IKGG+VPKEYIPG   G+ESVL  GV+AG+P+LG+KA LVDGAYHDVDSSVMAFEIAGRAAAREGLRKA ARLMEP+MQVDV TPEEYMGD++GDINARRG V +L +R  +K + + VPLANMFQYVSTLRS +KGRANYSM+L  YD+VP N+E E+
Sbjct:  542 VSYREAITQPAEIDYTHKKQSGGSGQYARIKVKFEPKDLNSEDGNTDFEFISDIKGGSVPKEYIPGVQKGIESVLGTGVVAGYPILGLKATLVDGAYHDVDSSVMAFEIAGRAAAREGLRKAKARLMEPLMQVDVTTPEEYMGDILGDINARRGLVGDLGERGNVKTISARVPLANMFQYVSTLRSMSKGRANYSMKLASYDFVPPNIEDEL 753
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BLAST of mRNA_P-canaliculata_contig9844.23947.1 vs. uniprot
Match: A0A7S2U7T6_9STRA (Elongation factor G, mitochondrial n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7T6_9STRA)

HSP 1 Score: 313 bits (802), Expect = 8.740e-100
Identity = 162/226 (71.68%), Postives = 187/226 (82.74%), Query Frame = 1 
Query:    1 VAYREAITKPAEVDYTHKKQSGGSGQFARVKIKFEPSDMDEEGATADFTFESEIKGGTVPKEYIPG---GVESVLSNGVLAGFPVLGMKAILVDGAYHDVDSSVMAFEIAGRAAAREGLRKAGARLMEPVMQVDVITPEEYMGDVIGDINARRGQVVELTDRNGLKQVESTVPLANMFQYVSTLRSATKGRANYSMQLLKYDYVPQNVEKEVVAKYGSGKKPVEDD 669
            V+YREAIT+ AE+DY HKKQSGGSGQ+ARVKI FEP +  EE    DF F+S+IKGG+VPKEYIPG   G+ESVL +GV+AG+PVLGMKA LVDGAYHDVDSSVMAFEIAGRAA REGLRKA ARLMEP+M+VD+ TPEEYMGDV+GDIN+RRGQV EL +R  +K + + VPLANMFQYVSTLRS +KGRANYSM+L  YD+VP NVE E+ A    G K  EDD
Sbjct:  474 VSYREAITQRAEIDYVHKKQSGGSGQYARVKIVFEPKEFSEEEGAMDFEFQSDIKGGSVPKEYIPGVAKGIESVLGSGVVAGYPVLGMKATLVDGAYHDVDSSVMAFEIAGRAATREGLRKAKARLMEPLMKVDITTPEEYMGDVLGDINSRRGQVDELGERGNIKTISALVPLANMFQYVSTLRSMSKGRANYSMKLANYDFVPPNVELELKA----GFKAAEDD 695
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BLAST of mRNA_P-canaliculata_contig9844.23947.1 vs. uniprot
Match: A0A7S2FQT5_9STRA (Elongation factor G, mitochondrial n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FQT5_9STRA)

HSP 1 Score: 311 bits (798), Expect = 1.180e-99
Identity = 164/226 (72.57%), Postives = 185/226 (81.86%), Query Frame = 1 
Query:    1 VAYREAITKPAEVDYTHKKQSGGSGQFARVKIKFEPSDMDEEGATADFTFESEIKGGTVPKEYIPG---GVESVLSNGVLAGFPVLGMKAILVDGAYHDVDSSVMAFEIAGRAAAREGLRKAGARLMEPVMQVDVITPEEYMGDVIGDINARRGQVVELTDRNGLKQVESTVPLANMFQYVSTLRSATKGRANYSMQLLKYDYVPQNVEKEVVAKYGSGKKPVEDD 669
            VAYREAIT+ AE+DYTHKKQSGGSGQFAR+K+ FEP D  E    +DF F  EIKGG VPKEYIPG   G+ESVLS+G +AGFPVLGMKA L+DGAYHDVDSSVMAFEIAGR AAREGLRK G RLMEP+MQVDV TPEEYMGDVIGDI ARRG VVEL +R   K +E+ VPL NMFQYVS LRS +KGRANYSM+L KY+ VP NVEK++VA++   KK  ED+
Sbjct:  433 VAYREAITQKAEIDYTHKKQSGGSGQFARIKMIFEPKDTTE----SDFEFAEEIKGGVVPKEYIPGVQKGIESVLSSGPIAGFPVLGMKATLIDGAYHDVDSSVMAFEIAGRMAAREGLRKGGGRLMEPLMQVDVTTPEEYMGDVIGDITARRGMVVELGERGNTKTIEALVPLGNMFQYVSQLRSMSKGRANYSMKLAKYELVPPNVEKDIVAEF---KKADEDE 651
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BLAST of mRNA_P-canaliculata_contig9844.23947.1 vs. uniprot
Match: A0A7S3AYB0_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AYB0_9EUKA)

HSP 1 Score: 296 bits (759), Expect = 1.700e-98
Identity = 151/216 (69.91%), Postives = 183/216 (84.72%), Query Frame = 1 
Query:    1 VAYREAITKPAEVDYTHKKQSGGSGQFARVKIKFEPSDMDEEGATADFTFESEIKGGTVPKEYIPG---GVESVLSNGVLAGFPVLGMKAILVDGAYHDVDSSVMAFEIAGRAAAREGLRKAGARLMEPVMQVDVITPEEYMGDVIGDINARRGQVVELTDRNGLKQVESTVPLANMFQYVSTLRSATKGRANYSMQLLKYDYVPQNVEKEVVAKY 639
            VAYREAIT+ A V+YTHKKQSGGSGQFA++ +KF P   D++ AT  F F+ EIKGGTVPKEYIPG   G+ES++ +G+LAGFPV+G KA L+DGAYHDVDSSVMAFEIAGR AAR+GLR+AGA+LMEP+M+V+VITPEE+MGDVIGDIN+RRG V EL +R  +K V + VPLANMFQYVS+LRSATKGRA+YSM L  Y+ VP NV KE+++KY
Sbjct:   58 VAYREAITREATVEYTHKKQSGGSGQFAKIVVKFAPLTDDDDAATG-FLFDQEIKGGTVPKEYIPGVAKGLESIMGSGILAGFPVIGCKATLMDGAYHDVDSSVMAFEIAGRGAARKGLREAGAQLMEPMMKVEVITPEEHMGDVIGDINSRRGMVGELGERGNMKVVRAQVPLANMFQYVSSLRSATKGRASYSMNLDSYELVPPNVAKELLSKY 272
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BLAST of mRNA_P-canaliculata_contig9844.23947.1 vs. uniprot
Match: A0A7S2IC57_9STRA (Elongation factor G, mitochondrial n=4 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A7S2IC57_9STRA)

HSP 1 Score: 312 bits (799), Expect = 1.780e-98
Identity = 159/212 (75.00%), Postives = 184/212 (86.79%), Query Frame = 1 
Query:    1 VAYREAITKPAEVDYTHKKQSGGSGQFARVKIKFEPSDMDEEGATADFTFESEIKGGTVPKEYIPG---GVESVLSNGVLAGFPVLGMKAILVDGAYHDVDSSVMAFEIAGRAAAREGLRKAGARLMEPVMQVDVITPEEYMGDVIGDINARRGQVVELTDRNGLKQVESTVPLANMFQYVSTLRSATKGRANYSMQLLKYDYVPQNVEKEV 627
            V+YREAIT+ AEVDYTHKKQSGGSGQ+ARVKI+FEP D  +E A  DF FE++IKGG+VPKEYIPG   G+ESVL +GV+AGFPVLGMKA L+DGAYHDVDSSVMAFEIAGRAAAREGLRKA ARLMEP+MQVDV TPEEYMGD++GDIN RRG V EL +R  +K +++ VPLANMFQYVSTLRS +KGRANYSM+L  YD+VP N+E E+
Sbjct:  564 VSYREAITQAAEVDYTHKKQSGGSGQYARVKIQFEPKDFSDE-ADMDFEFEADIKGGSVPKEYIPGVQKGIESVLGSGVVAGFPVLGMKAKLIDGAYHDVDSSVMAFEIAGRAAAREGLRKAKARLMEPMMQVDVTTPEEYMGDILGDINGRRGLVGELGERGNVKTIQAQVPLANMFQYVSTLRSMSKGRANYSMKLADYDFVPPNIEDEL 774
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BLAST of mRNA_P-canaliculata_contig9844.23947.1 vs. uniprot
Match: A0A7S2R190_9STRA (Elongation factor G, mitochondrial n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R190_9STRA)

HSP 1 Score: 311 bits (797), Expect = 3.450e-98
Identity = 156/221 (70.59%), Postives = 185/221 (83.71%), Query Frame = 1 
Query:    1 VAYREAITKPAEVDYTHKKQSGGSGQFARVKIKFEPSDMDEEGATADFTFESEIKGGTVPKEYIPG---GVESVLSNGVLAGFPVLGMKAILVDGAYHDVDSSVMAFEIAGRAAAREGLRKAGARLMEPVMQVDVITPEEYMGDVIGDINARRGQVVELTDRNGLKQVESTVPLANMFQYVSTLRSATKGRANYSMQLLKYDYVPQNVEKEVVAKYGSGKK 654
            V+YREAIT+ AE+DY HKKQSGGSGQ+ARVKI+FEP +M EE    DF F S+IKGG+VP+EYIPG   G+ESVL +GV+AG+PVLGMKA LVDGAYHDVDSSVMAFEIAGRAA REGLRKA ARLMEP+M+VDV TPEEYMGD++GD+NARRG V EL +R  +K + + VPLANMFQYVSTLRS +KGRANYSM+L  YD+VP NVE+E+   +   K+
Sbjct:  562 VSYREAITQAAEIDYVHKKQSGGSGQYARVKIQFEPKEMSEEEGAMDFEFTSDIKGGSVPREYIPGVQKGIESVLGSGVVAGYPVLGMKATLVDGAYHDVDSSVMAFEIAGRAACREGLRKAKARLMEPLMKVDVTTPEEYMGDILGDVNARRGLVGELGERGNIKTISALVPLANMFQYVSTLRSMSKGRANYSMKLANYDFVPPNVEEELKKGFAGEKE 782
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9844.23947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFY4_ECTSI5.510e-12786.73Elongation factor G, mitochondrial n=2 Tax=Ectocar... [more]
A0A836CHR4_9STRA1.090e-10976.55Elongation factor G, mitochondrial n=1 Tax=Tribone... [more]
A0A7S1GRX9_CYCTE2.050e-10272.64Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S3LBD3_9STRA5.840e-10172.64Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A1Z5JSH0_FISSO5.230e-10073.11Elongation factor G, mitochondrial n=2 Tax=Fistuli... [more]
A0A7S2U7T6_9STRA8.740e-10071.68Elongation factor G, mitochondrial n=1 Tax=Attheya... [more]
A0A7S2FQT5_9STRA1.180e-9972.57Elongation factor G, mitochondrial n=1 Tax=Florenc... [more]
A0A7S3AYB0_9EUKA1.700e-9869.91Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S2IC57_9STRA1.780e-9875.00Elongation factor G, mitochondrial n=4 Tax=Lithode... [more]
A0A7S2R190_9STRA3.450e-9870.59Elongation factor G, mitochondrial n=1 Tax=Eucampi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9844contigP-canaliculata_contig9844:7943..11810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score392.1
Seed ortholog evalue1.7e-106
Seed eggNOG ortholog2880.D8LFY4
KEGG koko:K02355
GOsGO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006996,GO:0007275,GO:0008144,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009657,GO:0009658,GO:0009791,GO:0009845,GO:0009941,GO:0009987,GO:0016043,GO:0017076,GO:0030554,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048046,GO:0048856,GO:0071840,GO:0090351,GO:0097159,GO:0097367,GO:1901265,GO:1901363
EggNOG free text desc.translation elongation factor activity
EggNOG OGsCOG0480@1,KOG0465@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPEFG, plastid translation elongation factor EF-G
Ec32 orthologEc-05_005020.1
Exons5
Model size672
Cds size672
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9844.23947.1prot_P-canaliculata_contig9844.23947.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9844 7943..11810 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817345.575915-CDS-P-canaliculata_contig9844:7942..80051622817345.575915-CDS-P-canaliculata_contig9844:7942..8005Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9844 7943..8005 -
1693495236.930478-CDS-P-canaliculata_contig9844:7942..80051693495236.930478-CDS-P-canaliculata_contig9844:7942..8005Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9844 7943..8005 -
1622817345.5937917-CDS-P-canaliculata_contig9844:8382..84631622817345.5937917-CDS-P-canaliculata_contig9844:8382..8463Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9844 8383..8463 -
1693495236.9457276-CDS-P-canaliculata_contig9844:8382..84631693495236.9457276-CDS-P-canaliculata_contig9844:8382..8463Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9844 8383..8463 -
1622817345.6081488-CDS-P-canaliculata_contig9844:10192..103331622817345.6081488-CDS-P-canaliculata_contig9844:10192..10333Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9844 10193..10333 -
1693495236.958425-CDS-P-canaliculata_contig9844:10192..103331693495236.958425-CDS-P-canaliculata_contig9844:10192..10333Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9844 10193..10333 -
1622817345.620399-CDS-P-canaliculata_contig9844:10900..110891622817345.620399-CDS-P-canaliculata_contig9844:10900..11089Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9844 10901..11089 -
1693495236.9728112-CDS-P-canaliculata_contig9844:10900..110891693495236.9728112-CDS-P-canaliculata_contig9844:10900..11089Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9844 10901..11089 -
1622817345.63241-CDS-P-canaliculata_contig9844:11612..118101622817345.63241-CDS-P-canaliculata_contig9844:11612..11810Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9844 11613..11810 -
1693495236.98685-CDS-P-canaliculata_contig9844:11612..118101693495236.98685-CDS-P-canaliculata_contig9844:11612..11810Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9844 11613..11810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9844.23947.1

>prot_P-canaliculata_contig9844.23947.1 ID=prot_P-canaliculata_contig9844.23947.1|Name=mRNA_P-canaliculata_contig9844.23947.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=224bp
VAYREAITKPAEVDYTHKKQSGGSGQFARVKIKFEPSDMDEEGATADFTF
ESEIKGGTVPKEYIPGGVESVLSNGVLAGFPVLGMKAILVDGAYHDVDSS
VMAFEIAGRAAAREGLRKAGARLMEPVMQVDVITPEEYMGDVIGDINARR
GQVVELTDRNGLKQVESTVPLANMFQYVSTLRSATKGRANYSMQLLKYDY
VPQNVEKEVVAKYGSGKKPVEDD*
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mRNA from alignment at P-canaliculata_contig9844:7943..11810-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9844.23947.1 ID=mRNA_P-canaliculata_contig9844.23947.1|Name=mRNA_P-canaliculata_contig9844.23947.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3868bp|location=Sequence derived from alignment at P-canaliculata_contig9844:7943..11810- (Pelvetia canaliculata dioecious)
GTGGCTTACCGTGAAGCGATCACAAAGCCTGCGGAGGTGGACTACACCCA
CAAGAAGCAGTCCGGAGGATCCGGCCAGTTTGCCCGCGTCAAGATCAAGT
TCGAGCCCTCGGACATGGACGAAGAAGGGGCAACGGCTGACTTCACGTTC
GAGTCTGAGATTAAGGGTGGTACCGTGCCGAAGGAATACATCCCCGGCGT
CCAAAAGGCAAGAGAGTCAAGTTTACTTGACTCTTTTTTTTCAAGCAAGC
GTTTTTTGTTTGTTTGATATTCCAGGTGTTGTAAATTTGATTGATTCTTC
TCCTGCACAGTGGATGGGGAGGCAGAGAGGAGAGCAGAAACACTGTCCAC
AGCTTTTTTTATTTTTATTTCGTGTTTTCCCGATCCCGTAGAAGGTCCGC
AGCTTACAGCACAGTAGTATACAGTGTACGCCAGTGCCCTTATGGTGTAG
CGTGTGTGCGGCTTAGTTGAACCCTTTCGATATAACAGCACCTATTTTTT
AACTCATCGCCTTCCACTTTTCTGAATTTAGAGCGGAAACCCCGCACAAG
CGTTTCTATAAAGTTACATAATCTTACAGTGTACGTAATGGACCGGAAAA
AGAGACCATGTGTAGAGCTGTATTACGATAATAGTAGGCCTTTGCGCTGC
GTGGAGTCAAGTCGAAACACCCGAACCAACCCGGAACACCATCCCCCCCC
CCACGTGTGAACGCCATCCAGGGTGTGGAATCGGTTCTATCCAACGGCGT
GCTGGCGGGCTTCCCCGTGCTGGGCATGAAGGCGATTCTCGTGGACGGGG
CTTACCACGACGTGGACTCTTCGGTGATGGCGTTCGAGATCGCGGGCCGC
GCCGCCGCTAGGGAGGGTTTGAGAAAGGCCGGCGCCCGGCTCATGGAACC
CGTTATGCAGGTTGCCGTCGTGTCGTCGCGCCATCGCTCTCAAACCTTGC
CTCGTATCGTCTTGTGTTTTGCTGACGCGTCAAGCCGAGGCTGCTCTGAT
TGCTTTTTCTGTCTTGTGGTCTCTCGCGGTGTAGTGTATCGATTTCCGTG
TCCTCTTACGCACCGACCCATGTATTTCAACCGCCTATGATTTCGTGAGG
TTGAGTGGGTTGGATACGTCGATCAGTACGCGTGGAGACGTGAACAAAAA
GTTACCTTAAAAAGCAAGAAGGGTTGAATAAAATCATAAAGGTACATGAA
ATAGAAAAGGTACACCTATTAACGCATGTTTTTAGCACTGTGTCAAGCCA
GCCGGAGATATAGCGTGAGGCTCAGAGGTTTGATTTGTAAACGGCTGACT
GACTCTGTGGTTCTACCCTCTTGCTACCCGCTCTGTTTTTTCCTCCAACA
AAGAACTATACGAAACGTTGCACCCGGGTACCTTTTTTTTTATAAGGTGA
AGTGTACTACACACTCATGCATTGCGTGTCCGTCGGCGTTTTCCTCTTTC
GTCATTACTGTTATTGTTTGTTGAAAGGTGGACGTGATCACTCCGGAGGA
GTACATGGGCGACGTGATCGGGGACATCAATGCTCGCCGCGGGCAGGTGG
TGGAGCTAACAGACAGGAACGGCTTGAAGCAAGTAGAGTCCACCGTGCCC
TTGGCCAACATGTTCCAGGTGAGGGTGTGCGTACCGCAATCTTTGTGTGA
AGGTTGTTTTAACTCTACTTTTTTGTTTTGGACCCCCCCCCCCCAATCAG
ACACACAAAAATCGTTGTCCCCCCGAAGCTCTTCGTGTACCTCTACTCGT
ATTATTTGTATACTTGATCGTTTATTGTTTATTGTGGATTGTTTTTTTTT
CGTCATTTTGTTTCGTTCATTTCTATTGTAGCACTACTTCGCTCCCCTAC
ACACCCCCGCTGGACTCCGGCGGGTTTTCCCTTCCGCGACTTGATTTTTT
ACAAGAGCACCGTCCCCGGTCTTTCGAAACGCCCACCCTGGCGTTGGTCG
CGGGGGCGCTTCCACGTCCTTACGAAATCCTCGTCGATATTTCGGGCGCT
CATTTCAGTGTCCACTCCTCGATCACACTTACTACAACCACAATAAATTG
TTGTTTGTTGATAGATTGATTGGCACCCACCCTCTCTCAGCCTTTGAGTG
AAGCAACTCATTCAGCCGTAAGAAAATACCTACGAAATACCAATTTCCTG
CTCATGGTCTCGAAGAAAAAAAGAGAGTACTCTAAATATATAACATACAT
AACCTGAGCAGTCTGTCTGGAGAGTTGATGACAAGACAAGCCCTCTATTA
ATACTGTCGTGTGATGACTTATCTACCTTTTTATTTTCGTGGGTGTGCAC
TACTATTTAATAGTGCCGGACGAGAGGCGTTTTGTCTACTTTTTGCTTGA
TGCGCGTAACAATGGTTGGTTGTACAGCAGAGAAAATGCATTTGTTTCGT
GCAAAAGCTGTCTTTGAGGGTCACCCACTGTTCTTTGATGGCCACCGATT
GGCAACAGTAACGCTGTCGGGGAGTCACTCGTAATAGCTACTGTTAGTGT
TTCGTGTTTGGCTCATGGTACTTACGTGTGAAAATTATTACTATTGATAG
AGGCACAGTGTAAAAAGATCCAACCAACGGGAACGTTCGCAAGTTTTCCT
TTTGTACTTTTTTTTTTTTTGGTGTCTTTTTCATCTGACCTTTCTCAGTT
TCCTCTCCCTATTGTCGCATTTTTTTCTTCTTTTTTTCATAAAACGTTAT
AGCTGAGCTCTTTTTTTGTGACATTTTTTTCATTTTTTTGTACAGCAGCT
TTCCTTTCGCAAAAAGTTATGGGTTTGCTTTTTTTATAGTGTATTCAGAG
AGATTTGCTTTTTCAGTATAGTACTTGTACATAACTTTCCTTTTCGCACT
TGAAGGAAATATTTTGAACCTCGAAGTAACAGTTTCGTATCCCTTTTGGA
AATTTGATGACCCCGTCCCCGGCGATGTCACCATAACAAGCCCGTCCTGG
GCAACTTACTACATGTTCCCCTCCATGGTAGGCAAGCTTGTCCCGAACTC
TACTTGTTCGACGAGAGGTCTGATTAAATAATCTTTCCTTGTTGGGGTAT
TTTCCCGTGCCGTCCCATTCTGAACTCGGGTACAACTCTAGATCACCCCT
CCCACACACACGCACTCTTTGGACAACTCCCCTTGAGTTCCCTTGTCAAT
ACCAGGACATCTGGCTCACAATCCCCTCCCCCGCCCTCCCCCCCCCCTCA
TACCCTCCCACAAATATCTGCTAATCCTTCCTTGGGACGTCCATAAATAA
TACTGACCGCATCATTTTCCATTGCTGTTTTTTCTCCTCCATATTTTCCC
ACCTCCGATGACACCAACATTCCTGTCTCCTGCTCGTGGCCGTGCAGTAT
GTTTCTACCCTCCGGTCCGCCACGAAAGGACGCGCCAACTACTCCATGCA
GTTACTTAAGTACGACTACGTCCCGCAGGTGACGCCCACAGAGGTTGACT
GTTACAGAGTGTTGATTGGTACACGGTGTTGGCGGTTACAGGTTAGAGAG
TGGAATGGAAGGGTCTGACGATTACACAAGAGGAACGGTTACGTATTCGT
AACGACAATCAAAGGGTGTCGGCGGTTACAAAACTTGGGCTGTTTTAAAC
GAATGCATGTTAAATTGAGAATGACGGCTACAGAGAATACTGCAACGCTT
GCGCGACATAAAATACAGTAACCGTTACGGAGAGTGCAGGTTACAAAGAC
GACGACAAGAGCGTGATTGTCTACGCGGTCCACTTGCGCTTCGTAATTTC
CAAAAACACGGACTGCAACTGAACCTCAGAATTGTGCTGCTACTTGTGTG
CGCAGAACGTGGAGAAAGAGGTGGTCGCCAAGTACGGCAGCGGAAAGAAG
CCCGTAGAGGACGATTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig9844:7943..11810-

>mRNA_P-canaliculata_contig9844.23947.1 ID=mRNA_P-canaliculata_contig9844.23947.1|Name=mRNA_P-canaliculata_contig9844.23947.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1344bp|location=Sequence derived from alignment at P-canaliculata_contig9844:7943..11810- (Pelvetia canaliculata dioecious)
GTGGCTTACCGTGAAGCGATCACAAAGCCTGCGGAGGTGGACTACACCCA
CAAGAAGCAGTCCGGAGGATCCGGCCAGTTTGCCCGCGTCAAGATCAAGT
TCGAGCCCTCGGACATGGACGAAGAAGGGGCAACGGCTGACTTCACGTTC
GAGTCTGAGATTAAGGGTGGTACCGTGCCGAAGGAATACATCCCCGGCGT
GGCTTACCGTGAAGCGATCACAAAGCCTGCGGAGGTGGACTACACCCACA
AGAAGCAGTCCGGAGGATCCGGCCAGTTTGCCCGCGTCAAGATCAAGTTC
GAGCCCTCGGACATGGACGAAGAAGGGGCAACGGCTGACTTCACGTTCGA
GTCTGAGATTAAGGGTGGTACCGTGCCGAAGGAATACATCCCCGGCGGTG
TGGAATCGGTTCTATCCAACGGCGTGCTGGCGGGCTTCCCCGTGCTGGGC
ATGAAGGCGATTCTCGTGGACGGGGCTTACCACGACGTGGACTCTTCGGT
GATGGCGTTCGAGATCGCGGGCCGCGCCGCCGCTAGGGAGGGTTTGAGAA
AGGCCGGCGCCCGGCTCATGGAACCCGTTATGCAGGGTGTGGAATCGGTT
CTATCCAACGGCGTGCTGGCGGGCTTCCCCGTGCTGGGCATGAAGGCGAT
TCTCGTGGACGGGGCTTACCACGACGTGGACTCTTCGGTGATGGCGTTCG
AGATCGCGGGCCGCGCCGCCGCTAGGGAGGGTTTGAGAAAGGCCGGCGCC
CGGCTCATGGAACCCGTTATGCAGGTGGACGTGATCACTCCGGAGGAGTA
CATGGGCGACGTGATCGGGGACATCAATGCTCGCCGCGGGCAGGTGGTGG
AGCTAACAGACAGGAACGGCTTGAAGCAAGTAGAGTCCACCGTGCCCTTG
GCCAACATGTTCCAGGTGGACGTGATCACTCCGGAGGAGTACATGGGCGA
CGTGATCGGGGACATCAATGCTCGCCGCGGGCAGGTGGTGGAGCTAACAG
ACAGGAACGGCTTGAAGCAAGTAGAGTCCACCGTGCCCTTGGCCAACATG
TTCCAGTATGTTTCTACCCTCCGGTCCGCCACGAAAGGACGCGCCAACTA
CTCCATGCAGTTACTTAAGTACGACTACGTCCCGCAGTATGTTTCTACCC
TCCGGTCCGCCACGAAAGGACGCGCCAACTACTCCATGCAGTTACTTAAG
TACGACTACGTCCCGCAGAACGTGGAGAAAGAGGTGGTCGCCAAGTACGG
CAGCGGAAAGAAGCCCGTAGAGGACGATTGAAACGTGGAGAAAGAGGTGG
TCGCCAAGTACGGCAGCGGAAAGAAGCCCGTAGAGGACGATTGA
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