mRNA_P-canaliculata_contig98423.23945.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig98423.23945.1
Unique NamemRNA_P-canaliculata_contig98423.23945.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig98423.23945.1 vs. uniprot
Match: UPI00167B3E39 (NADH:ubiquinone oxidoreductase subunit NDUFA12 n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI00167B3E39)

HSP 1 Score: 193 bits (490), Expect = 9.870e-62
Identity = 86/100 (86.00%), Postives = 93/100 (93.00%), Query Frame = 1
Query:    1 LSFLSSIFTWWNGSTLGTSLQIRTKAVKVGEDEFGNQYFESEKLRYDGRTRRYVTYSNYAEASKVPPVWNGWLHHTYDELPSEIDIKVHGWQESHVPNMT 300
            L F+  +FTWWNGSTLGT LQIR+KAV+VGEDE+GN+YFESEKLRYDGR RRYV YS+YAEASKVPPVWNGWLHHTYDELPSEIDIKVHGWQ SHVPNMT
Sbjct:   10 LDFIKRLFTWWNGSTLGTLLQIRSKAVQVGEDEYGNRYFESEKLRYDGRNRRYVLYSDYAEASKVPPVWNGWLHHTYDELPSEIDIKVHGWQGSHVPNMT 109          
BLAST of mRNA_P-canaliculata_contig98423.23945.1 vs. uniprot
Match: UPI001EFF4BC9 (NADH:ubiquinone oxidoreductase subunit NDUFA12 n=1 Tax=Pseudaquidulcibacter saccharophilus TaxID=2831900 RepID=UPI001EFF4BC9)

HSP 1 Score: 130 bits (327), Expect = 4.670e-37
Identity = 57/97 (58.76%), Postives = 67/97 (69.07%), Query Frame = 1
Query:   10 LSSIFTWWNGSTLGTSLQIRTKAVKVGEDEFGNQYFESEKLRYDGRTRRYVTYSNYAEASKVPPVWNGWLHHTYDELPSEIDIKVHGWQESHVPNMT 300
            L  IFTWWNG TLG    I   A KVGED+FGN YFE  K   DGR RRYV Y  YA+AS+VP  W+GWLHHT+DE P++   K+  W++ HVPNMT
Sbjct:    2 LKKIFTWWNGVTLGALFDISRHAKKVGEDDFGNSYFEEGKATVDGRKRRYVMYKGYADASRVPADWHGWLHHTFDEPPTKEPFKIKEWEKPHVPNMT 98          
BLAST of mRNA_P-canaliculata_contig98423.23945.1 vs. uniprot
Match: UPI0004158F44 (NADH:ubiquinone oxidoreductase subunit NDUFA12 n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI0004158F44)

HSP 1 Score: 130 bits (326), Expect = 7.030e-37
Identity = 54/98 (55.10%), Postives = 73/98 (74.49%), Query Frame = 1
Query:    7 FLSSIFTWWNGSTLGTSLQIRTKAVKVGEDEFGNQYFESEKLRYDGRTRRYVTYSNYAEASKVPPVWNGWLHHTYDELPSEIDIKVHGWQESHVPNMT 300
            F+  IFTWWNGST GT+LQIR K  KVGED +GN Y+E +   YDGR RR+VTY+ YA+AS++PP W GWL++T++++P+E     H W+  H PN+T
Sbjct:    3 FIKRIFTWWNGSTFGTNLQIRRKGNKVGEDAYGNTYYEQKSDAYDGRLRRWVTYTGYADASRIPPEWQGWLNYTHEDVPTEDTRPDHEWELEHRPNLT 100          
BLAST of mRNA_P-canaliculata_contig98423.23945.1 vs. uniprot
Match: A0A420WLY8_9PROT (NADH:ubiquinone oxidoreductase subunit n=1 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WLY8_9PROT)

HSP 1 Score: 129 bits (325), Expect = 9.980e-37
Identity = 52/100 (52.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:    1 LSFLSSIFTWWNGSTLGTSLQIRTKAVKVGEDEFGNQYFESEKLRYDGRTRRYVTYSNYAEASKVPPVWNGWLHHTYDELPSEIDIKVHGWQESHVPNMT 300
            +SF+  IFTWWNGST GT+L+I  +  K+ ED +GN Y+E +K  Y+GR RR+VTY  YA+AS++PP W GWL+HT +  P+E     H W++ HVPN+T
Sbjct:    1 MSFIKRIFTWWNGSTFGTNLEIGRRGTKIAEDAYGNTYYEEKKATYEGRKRRWVTYDGYADASRIPPGWQGWLNHTSELPPTEDGYVPHAWEKDHVPNLT 100          
BLAST of mRNA_P-canaliculata_contig98423.23945.1 vs. uniprot
Match: A0A2G2IXQ7_9PROT (NADH:ubiquinone oxidoreductase subunit NDUFA12 n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2IXQ7_9PROT)

HSP 1 Score: 128 bits (322), Expect = 2.940e-36
Identity = 51/98 (52.04%), Postives = 73/98 (74.49%), Query Frame = 1
Query:    7 FLSSIFTWWNGSTLGTSLQIRTKAVKVGEDEFGNQYFESEKLRYDGRTRRYVTYSNYAEASKVPPVWNGWLHHTYDELPSEIDIKVHGWQESHVPNMT 300
            F+  IF WW+G+TLGT L ++ +A  + +D+FGN+Y+E  K  YDGR RR+VTYS YA+AS+VPP W+GWLHH YD+ P+E  +    +++ H+PNMT
Sbjct:    4 FIKRIFAWWDGATLGTLLTVKRRAEFIFKDDFGNKYYEERKTTYDGRKRRWVTYSGYADASRVPPEWHGWLHHMYDDRPNETPLLTQSYEKEHMPNMT 101          
BLAST of mRNA_P-canaliculata_contig98423.23945.1 vs. uniprot
Match: UPI001C208E34 (NADH:ubiquinone oxidoreductase subunit NDUFA12 n=1 Tax=Caulobacter sp. S45 TaxID=1641861 RepID=UPI001C208E34)

HSP 1 Score: 127 bits (319), Expect = 7.920e-36
Identity = 55/96 (57.29%), Postives = 73/96 (76.04%), Query Frame = 1
Query:   19 IFTWWNGSTLGTSLQIRTKAVKVGEDEFGNQYFESEKLR--YDGRTRRYVTYSNYAEASKVPPVWNGWLHHTYDELPSEIDIKVHGWQESHVPNMT 300
            IFTWWNG+TLG    I+ +AV VGED +GN+YFE++  R  YDGR RR+VTY  YAEASKVP  W+GWLH+T+DE P++  +  H W++ H+PN+T
Sbjct:    5 IFTWWNGATLGALNTIKKRAVFVGEDSYGNRYFEAKDTRDSYDGRLRRWVTYKGYAEASKVPSEWHGWLHYTFDEPPTKEPMLTHAWEKPHLPNLT 100          
BLAST of mRNA_P-canaliculata_contig98423.23945.1 vs. uniprot
Match: A0A172Y9S8_9CAUL (NADH dehydrogenase n=24 Tax=Caulobacteraceae TaxID=76892 RepID=A0A172Y9S8_9CAUL)

HSP 1 Score: 127 bits (318), Expect = 1.090e-35
Identity = 55/98 (56.12%), Postives = 71/98 (72.45%), Query Frame = 1
Query:   10 LSSIFTWWNGSTLGTSLQIRTKAVKVGEDEFGNQYFES-EKLRYDGRTRRYVTYSNYAEASKVPPVWNGWLHHTYDELPSEIDIKVHGWQESHVPNMT 300
            LS IFTWWNG+T+GT   I  +  +VG DEFGN+Y+ES + + YDGR RR+V Y  YAEA+KVPP W GWL +TYDE P+E  +    W++ H+PNMT
Sbjct:    2 LSKIFTWWNGATIGTLFTIGKRGQQVGTDEFGNRYYESRDTVSYDGRKRRWVIYDGYAEATKVPPEWQGWLRYTYDETPTERPLPRQAWEKDHLPNMT 99          
BLAST of mRNA_P-canaliculata_contig98423.23945.1 vs. uniprot
Match: UPI001CD848DB (NADH:ubiquinone oxidoreductase subunit NDUFA12 n=1 Tax=Brevundimonas sp. Sa3CVA3 TaxID=2762241 RepID=UPI001CD848DB)

HSP 1 Score: 124 bits (312), Expect = 8.650e-35
Identity = 52/98 (53.06%), Postives = 71/98 (72.45%), Query Frame = 1
Query:   10 LSSIFTWWNGSTLGTSLQIRTKAVKVGEDEFGNQYFES-EKLRYDGRTRRYVTYSNYAEASKVPPVWNGWLHHTYDELPSEIDIKVHGWQESHVPNMT 300
            +S IFTWWNG+T+GT   +  +  +VG DEFGN+Y+ES + + YDGR RR+V Y  YAEA+KVPP W GWL +TYDE P+E  +    W++ H+PN+T
Sbjct:    1 MSKIFTWWNGATIGTLFTVGKRGQQVGTDEFGNRYYESRDTVSYDGRKRRWVIYDGYAEATKVPPEWQGWLRYTYDETPTERPLPRQAWEKDHLPNLT 98          
BLAST of mRNA_P-canaliculata_contig98423.23945.1 vs. uniprot
Match: UPI001ABB9AF1 (NADH:ubiquinone oxidoreductase subunit NDUFA12 n=2 Tax=Brevundimonas TaxID=41275 RepID=UPI001ABB9AF1)

HSP 1 Score: 124 bits (312), Expect = 8.650e-35
Identity = 52/98 (53.06%), Postives = 70/98 (71.43%), Query Frame = 1
Query:   10 LSSIFTWWNGSTLGTSLQIRTKAVKVGEDEFGNQYFES-EKLRYDGRTRRYVTYSNYAEASKVPPVWNGWLHHTYDELPSEIDIKVHGWQESHVPNMT 300
            +S IFTWWNG+T+GT   +  +   +G DEFGN+Y++S + + YDGR RR+V Y  YAEA+KVPP W GWL +TYDE PSE  +    W++ H+PNMT
Sbjct:    1 MSKIFTWWNGATIGTLFTVGKRGSLIGTDEFGNRYYQSRDNVSYDGRKRRWVIYDGYAEATKVPPEWQGWLRYTYDEAPSEKPLHRQSWEKDHLPNMT 98          
BLAST of mRNA_P-canaliculata_contig98423.23945.1 vs. uniprot
Match: A0A0Q6TTI3_9CAUL (NADH dehydrogenase n=4 Tax=Caulobacter TaxID=75 RepID=A0A0Q6TTI3_9CAUL)

HSP 1 Score: 124 bits (312), Expect = 9.180e-35
Identity = 53/99 (53.54%), Postives = 73/99 (73.74%), Query Frame = 1
Query:   10 LSSIFTWWNGSTLGTSLQIRTKAVKVGEDEFGNQYFESEKLR--YDGRTRRYVTYSNYAEASKVPPVWNGWLHHTYDELPSEIDIKVHGWQESHVPNMT 300
            L +IFTWWNG+TLG    I  + V VG+DE+GN+YFE+      YD R RR+V Y+ YAEASKVPP W+GWLH+T+DE P+++ +K   W++ H+PN+T
Sbjct:    2 LKAIFTWWNGATLGQRFHIGRRGVFVGQDEYGNRYFEARDNSDSYDDRKRRWVIYNGYAEASKVPPDWSGWLHYTFDERPNQVPLKRREWEKDHLPNLT 100          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98423.23945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00167B3E399.870e-6286.00NADH:ubiquinone oxidoreductase subunit NDUFA12 n=1... [more]
UPI001EFF4BC94.670e-3758.76NADH:ubiquinone oxidoreductase subunit NDUFA12 n=1... [more]
UPI0004158F447.030e-3755.10NADH:ubiquinone oxidoreductase subunit NDUFA12 n=1... [more]
A0A420WLY8_9PROT9.980e-3752.00NADH:ubiquinone oxidoreductase subunit n=1 Tax=Lit... [more]
A0A2G2IXQ7_9PROT2.940e-3652.04NADH:ubiquinone oxidoreductase subunit NDUFA12 n=1... [more]
UPI001C208E347.920e-3657.29NADH:ubiquinone oxidoreductase subunit NDUFA12 n=1... [more]
A0A172Y9S8_9CAUL1.090e-3556.12NADH dehydrogenase n=24 Tax=Caulobacteraceae TaxID... [more]
UPI001CD848DB8.650e-3553.06NADH:ubiquinone oxidoreductase subunit NDUFA12 n=1... [more]
UPI001ABB9AF18.650e-3553.06NADH:ubiquinone oxidoreductase subunit NDUFA12 n=2... [more]
A0A0Q6TTI3_9CAUL9.180e-3553.54NADH dehydrogenase n=4 Tax=Caulobacter TaxID=75 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98423contigP-canaliculata_contig98423:765..1064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score129.8
Seed ortholog evalue7.1e-28
Seed eggNOG ortholog1121948.AUAC01000003_gene2223
Preferred nameMA20_29090
KEGG koko:K00356
KEGG Pathwayko00190,map00190
EggNOG free text desc.NADH dehydrogenase
EggNOG OGs1RHS3@1224,2U95G@28211,43YD0@69657,COG3761@1,COG3761@2
EC1.6.99.3
COG Functional cat.C
Best tax levelHyphomonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categorysignal peptide
Exons1
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817345.4950683-CDS-P-canaliculata_contig98423:764..10641622817345.4950683-CDS-P-canaliculata_contig98423:764..1064Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98423 765..1064 +
1693495236.8943243-CDS-P-canaliculata_contig98423:764..10641693495236.8943243-CDS-P-canaliculata_contig98423:764..1064Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98423 765..1064 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98423.23945.1prot_P-canaliculata_contig98423.23945.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig98423 765..1064 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig98423.23945.1

>prot_P-canaliculata_contig98423.23945.1 ID=prot_P-canaliculata_contig98423.23945.1|Name=mRNA_P-canaliculata_contig98423.23945.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=100bp
LSFLSSIFTWWNGSTLGTSLQIRTKAVKVGEDEFGNQYFESEKLRYDGRT
RRYVTYSNYAEASKVPPVWNGWLHHTYDELPSEIDIKVHGWQESHVPNMT
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mRNA from alignment at P-canaliculata_contig98423:765..1064+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig98423.23945.1 ID=mRNA_P-canaliculata_contig98423.23945.1|Name=mRNA_P-canaliculata_contig98423.23945.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=300bp|location=Sequence derived from alignment at P-canaliculata_contig98423:765..1064+ (Pelvetia canaliculata dioecious)
TTGTCTTTTTTGAGCAGCATTTTTACGTGGTGGAACGGTTCCACGCTCGG CACGTCGCTGCAAATCCGCACCAAGGCCGTCAAGGTCGGGGAAGACGAGT TTGGTAACCAGTATTTTGAGAGCGAAAAACTTCGCTATGACGGACGCACC CGCCGCTATGTGACATATTCAAATTACGCCGAAGCGTCCAAAGTCCCGCC TGTCTGGAACGGCTGGCTCCACCACACATATGACGAACTCCCGTCAGAGA TCGATATCAAAGTTCACGGGTGGCAGGAAAGCCATGTGCCTAATATGACC
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Coding sequence (CDS) from alignment at P-canaliculata_contig98423:765..1064+

>mRNA_P-canaliculata_contig98423.23945.1 ID=mRNA_P-canaliculata_contig98423.23945.1|Name=mRNA_P-canaliculata_contig98423.23945.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at P-canaliculata_contig98423:765..1064+ (Pelvetia canaliculata dioecious)
TTGTCTTTTTTGAGCAGCATTTTTACGTGGTGGAACGGTTCCACGCTCGG
CACGTCGCTGCAAATCCGCACCAAGGCCGTCAAGGTCGGGGAAGACGAGT
TTGGTAACCAGTATTTTGAGAGCGAAAAACTTCGCTATGACGGACGCACC
CGCCGCTATGTGACATATTCAAATTACGCCGAAGCGTCCAAAGTCCCGCC
TGTCTGGAACGGCTGGCTCCACCACACATATGACGAACTCCCGTCAGAGA
TCGATATCAAAGTTCACGGGTGGCAGGAAAGCCATGTGCCTAATATGACC
TTGTCTTTTTTGAGCAGCATTTTTACGTGGTGGAACGGTTCCACGCTCGG
CACGTCGCTGCAAATCCGCACCAAGGCCGTCAAGGTCGGGGAAGACGAGT
TTGGTAACCAGTATTTTGAGAGCGAAAAACTTCGCTATGACGGACGCACC
CGCCGCTATGTGACATATTCAAATTACGCCGAAGCGTCCAAAGTCCCGCC
TGTCTGGAACGGCTGGCTCCACCACACATATGACGAACTCCCGTCAGAGA
TCGATATCAAAGTTCACGGGTGGCAGGAAAGCCATGTGCCTAATATGACC
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