mRNA_P-canaliculata_contig98344.23939.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig98344.23939.1 vs. uniprot
Match: A0A5C5ZQ85_9BACT (Outer membrane biogenesis protein BamB n=1 Tax=Stieleria varia TaxID=2528005 RepID=A0A5C5ZQ85_9BACT) HSP 1 Score: 216 bits (550), Expect = 2.990e-65 Identity = 104/193 (53.89%), Postives = 135/193 (69.95%), Query Frame = 1 Query: 22 WNQFRGPDGSGTSSATNVPVTFSKSNTLWQTAIPGTGWSSPVFTDGHIWLTTAETTKATQEQIAAKTRDVQFAKIKTVAGSVTLRAICVDANTGSILHNLLLREINDPDLINPLNSYASPTAAINGQRVICHFGNYGTWCLDNTSGKILWQNALIVDHSVGPGSSPVIADNVVIIACDGIDKQFVTGLNLETG 600 W QFRGP G G +S+ +V + F ++T + G GWSSPV +WLT+A T+ATQEQ AK VQ A +K VAGS+ L A CVDA +G IL L +I DP+ I+P+NSYASPT A+ G R+ICHFG YGTWCLD T+G+ +W L+VD SVGPGSSP++ D++V++ CDGIDKQFV G++L G Sbjct: 33 WGQFRGPQGMGVASSDSVGLNFE--TPAFRTPLRGVGWSSPVTDGQRVWLTSAIVTEATQEQRKAKLAKVQMANMKDVAGSIELLAQCVDATSGEILFEKSLGKIGDPNPIHPMNSYASPTPALVGDRLICHFGGYGTWCLDATTGETIWTQRLVVDDSVGPGSSPIVVDDIVLLVCDGIDKQFVAGVSLSEG 223
BLAST of mRNA_P-canaliculata_contig98344.23939.1 vs. uniprot
Match: A0A3M1MBE2_9BACT (Serine/threonine protein kinase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1MBE2_9BACT) HSP 1 Score: 213 bits (543), Expect = 3.670e-64 Identity = 103/194 (53.09%), Postives = 131/194 (67.53%), Query Frame = 1 Query: 22 WNQFRGPDGSGTSSATNVPVTFSKSNTL-WQTAIPGTGWSSPVFTDGHIWLTTAETTKATQEQIAAKTRDVQFAKIKTVAGSVTLRAICVDANTGSILHNLLLREINDPDLINPLNSYASPTAAINGQRVICHFGNYGTWCLDNTSGKILWQNALIVDHSVGPGSSPVIADNVVIIACDGIDKQFVTGLNLETG 600 W +FRGP G G +++ PV F L W+T I G GWSSPV DG IWLTTA A++ + AK K +AGSVT +AICVD ++G ++H++ L +DPD INPLNSYASPT I+G RVIC FGNYGTW LD SG+ +W+ VD+SVGPGSSPV+ ++VI+ CDGID+QFV GL+ TG Sbjct: 33 WPRFRGPSGQGVATSGQAPVQFGLGRNLRWKTPIEGQGWSSPVIADGQIWLTTAIAIPASEAERQAKLAGKTAGGPKELAGSVTFKAICVDLDSGQVIHSITLATEDDPDPINPLNSYASPTPVIDGDRVICDFGNYGTWALDRDSGETIWKTKYDVDYSVGPGSSPVVVGDIVILVCDGIDQQFVVGLDKRTG 226
BLAST of mRNA_P-canaliculata_contig98344.23939.1 vs. uniprot
Match: A0A257W137_9BACT (Serine/threonine protein kinase (Fragment) n=1 Tax=Planctomycetales bacterium 12-60-4 TaxID=1970541 RepID=A0A257W137_9BACT) HSP 1 Score: 202 bits (513), Expect = 2.580e-62 Identity = 98/203 (48.28%), Postives = 139/203 (68.47%), Query Frame = 1 Query: 4 VGSAEDWNQFRGPDGSGTSSATNVPVTFSKSNTL-WQTAIPGTGWSSPVFTDGHIWLTTAETTKATQEQIAA---KTRDVQFAKIKTVAGSVTLRAICVDANTGSILHNLLLREINDPDLINPLNSYASPTAAINGQRVICHFGNYGTWCLDNTSGKILWQNALIVDHSVGPGSSPVIADNVVIIACDGIDKQFVTGLNLETG 600 + S +W QFRGP+G G ++A N+P +S+ + W++AIPG GWSSPV DG +W+TTA AT E++ A K R A T+ GS+TLRA+ VD ++G I+HN+ L E+ DP ++ LNSYASP+ + R++CHFG +GT C+D GKILW+ +L DHSVGPGSSP++ +++VII CDG + Q+V L+L TG Sbjct: 16 LASGVEWPQFRGPNGDGHTAAVNLPTEWSEDQGIAWKSAIPGRGWSSPVIGDGLVWVTTAVEHTATSEELEAQKTKLRGNPMANQMTLVGSITLRAVAVDLDSGKIVHNIRLFEVKDPQPVHSLNSYASPSPLLVENRLVCHFGAFGTACVDTADGKILWKASLPNDHSVGPGSSPIVFEDLVIIPCDGTESQYVAALDLYTG 218
BLAST of mRNA_P-canaliculata_contig98344.23939.1 vs. uniprot
Match: A0A5C6EVR3_9BACT (Outer membrane biogenesis protein BamB n=1 Tax=Rubripirellula reticaptiva TaxID=2528013 RepID=A0A5C6EVR3_9BACT) HSP 1 Score: 209 bits (531), Expect = 2.880e-62 Identity = 109/195 (55.90%), Postives = 131/195 (67.18%), Query Frame = 1 Query: 22 WNQFRGPDGSGTSSATNVPVTFSKSN-TLWQTAIPGTGWSSPVFTDGHI-WLTTAETTKATQEQIAAKTRDVQFAKIKTVAGSVTLRAICVDANTGSILHNLLLREINDPDLINPLNSYASPTAAINGQRVICHFGNYGTWCLDNTSGKILWQNALIVDHSVGPGSSPVIADNVVIIACDGIDKQFVTGLNLETG 600 W QFRGPDGSG S +NV + N W+T G GWSSPV TDG+I W+T A+ T AT EQ DVQ A +K VAGSV L AI +DA TG LH + L ++ +P I+P+N YASPT AI+G RV+ HFG YGTWCLD SG +LWQ +VD SVGPGSSPVI VI+ CDG+DKQFV ++L TG Sbjct: 39 WTQFRGPDGSGISENSNVELQIDPLNGAAWRTETLGHGWSSPV-TDGNIVWMTAAKVTLATAEQKKQALADVQLADMKDVAGSVELLAIALDAKTGKTLHVIELGQVAEPKPIHPMNGYASPTPAIDGDRVVVHFGQYGTWCLDLQSGDVLWQRTFVVDDSVGPGSSPVIHQGNVILTCDGMDKQFVVAVSLATG 232
BLAST of mRNA_P-canaliculata_contig98344.23939.1 vs. uniprot
Match: UPI0014226B40 (PQQ-binding-like beta-propeller repeat protein n=1 Tax=Rubinisphaera sp. JC658 TaxID=2713176 RepID=UPI0014226B40) HSP 1 Score: 199 bits (505), Expect = 1.410e-58 Identity = 99/197 (50.25%), Postives = 136/197 (69.04%), Query Frame = 1 Query: 16 EDWNQFRGPDGSGTSSATNVPVTFSKS-NTLWQTAIPGTGWSSPVFTDGHIWLTTAETTKATQEQIAAKTRDVQFAKIKTVAGSVTLRAICVDANTGSILHNLLLREINDPDLINPLNSYASPTAAINGQRVICHFGNYGTWCLDNTSGKILW-QNALIVDHSVGPGSSPVIADNVVIIACDGIDKQFVTGLNLETG 600 E W QFRGPDG+G ATN+PV +S+S N W+TAIPG G SSPV DG +WLTTA T+ + A+ V+ ++ + GS++LRAICVDA +G IL N+ + I +P+ I+ LNSYASPT + G+R+ CHFG YGT CLD+ +G+ +W Q L VDH GPG+SP++ ++++I DGID+QFV L+ TG Sbjct: 23 ESWPQFRGPDGNGHGDATNLPVEWSESENVSWKTAIPGDGHSSPVIADGRVWLTTAVAETLTEAEKKARLAKVKNSRGLELVGSLSLRAICVDAESGKILQNVEVFNIENPEPIHSLNSYASPTPVVEGERLFCHFGTYGTACLDSKTGEKVWEQRTLTVDHQNGPGASPIVWNDLLIAQYDGIDRQFVVALDKRTG 219
BLAST of mRNA_P-canaliculata_contig98344.23939.1 vs. uniprot
Match: A0A353BFA4_9PLAN (Serine/threonine protein kinase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A353BFA4_9PLAN) HSP 1 Score: 195 bits (496), Expect = 3.610e-57 Identity = 91/200 (45.50%), Postives = 125/200 (62.50%), Query Frame = 1 Query: 1 SVGSAEDWNQFRGPDGSGTSSATNVPVTFSKSNTLWQTAIPGTGWSSPVFTDGHIWLTTAETTKATQEQIAAKTRDVQFAKIKTVAGSVTLRAICVDANTGSILHNLLLREINDPDLINPLNSYASPTAAINGQRVICHFGNYGTWCLDNTSGKILWQNALIVDHSVGPGSSPVIADNVVIIACDGIDKQFVTGLNLETG 600 SV + + W Q+RGP G G + +P F + W+ + G GWS+P G IWLTTA T AT+E+ AA+ +K VA + LRA+C+ G +LH+L L I PD INPLN+YASP+ I+G V+ HFG+ GTWC+ +G+++WQ + V HSVG GSSP + D+VV++ CDG+DKQFV LN TG Sbjct: 28 SVHAQDSWWQWRGPGGQGHAQNCRIPTQFDVKDATWKYDVAGKGWSTPAVDSGMIWLTTAIVTPATEEETAARLAGDPLKDMKEVASEIELRALCLRQENGRVLHDLALGRIKAPDPINPLNTYASPSPVIDGDNVLLHFGDLGTWCVKMVTGEVVWQRRIRVQHSVGAGSSPFVIDDVVVLVCDGVDKQFVVALNKNTG 227
BLAST of mRNA_P-canaliculata_contig98344.23939.1 vs. uniprot
Match: A3ZQ52_9BACT (Probable serine/threonine protein kinase afsK n=1 Tax=Blastopirellula marina DSM 3645 TaxID=314230 RepID=A3ZQ52_9BACT) HSP 1 Score: 195 bits (495), Expect = 4.640e-57 Identity = 99/198 (50.00%), Postives = 134/198 (67.68%), Query Frame = 1 Query: 16 EDWNQFRGPDGSGTSSATNVPVTFSKS-NTLWQTAIPGTGWSSPVFTDGHIWLTTAETTKATQEQIAAKTRDV-QFAKIKT-VAGSVTLRAICVDANTGSILHNLLLREINDPDLINPLNSYASPTAAINGQRVICHFGNYGTWCLDNTSGKILWQNALIVDHSVGPGSSPVIADNVVIIACDGIDKQFVTGLNLETG 600 + W QFRG G G S ATNVP+ +S++ N W+T I G GWSSPV +G +WLTTA TT+A++E K + +F ++ + +A S+ LRAI +D TG I + L I DPD I+ NSYASPT + G R+ CHFG YGT C+D +GK++W+N L + H+VGPGSSPV+ D V+I+ CDG D+Q+V GLN TG Sbjct: 25 DSWPQFRGASGDGVSEATNVPLKWSEAENVAWKTPIEGKGWSSPVLANGKLWLTTAITTEASKEAFEKKLKGKPKFQQMTSELAASIQLRAIEIDYATGEIGKQVDLFYIEDPDPIHSTNSYASPTPVLEGDRLYCHFGTYGTCCVDTITGKLVWKNQLPLQHNVGPGSSPVLHDGVMILTCDGADQQYVCGLNATTG 222
BLAST of mRNA_P-canaliculata_contig98344.23939.1 vs. uniprot
Match: A0A5B1CMV0_9BACT (Outer membrane biogenesis protein BamB n=2 Tax=Rubripirellula obstinata TaxID=406547 RepID=A0A5B1CMV0_9BACT) HSP 1 Score: 196 bits (497), Expect = 4.700e-57 Identity = 95/202 (47.03%), Postives = 132/202 (65.35%), Query Frame = 1 Query: 1 SVGSAED-WNQFRGPDGSGTSSATNVPVTFSKS-NTLWQTAIPGTGWSSPVFTDGHIWLTTAETTKATQEQIAAKTRDVQFAKIKTVAGSVTLRAICVDANTGSILHNLLLREINDPDLINPLNSYASPTAAINGQRVICHFGNYGTWCLDNTSGKILWQNALIVDHSVGPGSSPVIADNVVIIACDGIDKQFVTGLNLETG 600 S+ AE+ W QFRGPD SG +++ V S N +W+T GWSSP+ +W+T+A T AT EQ A K FA +K V SV + A+C+D NTG I+H++ L I P+ INP+NS+ASPT +G RV+ HFG YGT+CL+ +G ++W+ LI+D SVGPGSS I D +V+I CDG+D Q+V GL+L++G Sbjct: 51 SIAKAEEPWRQFRGPDRSGVAASDEVTFDLSPGKNVVWRTETKHVGWSSPITDGKRLWMTSARTVAATPEQKAKKLEGATFAGLKDVVTSVDIFAVCLDVNTGEIVHHIRLDTIESPNSINPMNSFASPTGVWSGDRVVLHFGRYGTYCLNANTGDVIWKERLIIDDSVGPGSSLAIHDGIVVIPCDGMDVQYVAGLSLQSG 252
BLAST of mRNA_P-canaliculata_contig98344.23939.1 vs. uniprot
Match: A0A5B9QWS8_9BACT (Outer membrane biogenesis protein BamB n=1 Tax=Roseimaritima ulvae TaxID=980254 RepID=A0A5B9QWS8_9BACT) HSP 1 Score: 189 bits (480), Expect = 8.420e-55 Identity = 91/195 (46.67%), Postives = 126/195 (64.62%), Query Frame = 1 Query: 22 WNQFRGPDGSGTSSA-TNVPVTFSKSNTL-WQTAIPGTGWSSPVFTDGHIWLTTAETTKATQEQIAAKTRDVQFAKIKTVAGSVTLRAICVDANTGSILHNLLLREINDPDLINPLNSYASPTAAINGQRVICHFGNYGTWCLDNTSGKILWQNALIVDHSVGPGSSPVIADNVVIIACDGIDKQFVTGLNLETG 600 W FRGP G+G ++ VP+ F + L W+ I GTGWSSPV DG IWLTTA+TT+A+++Q+A + + K K +AG+ L +CVD TG L L I+ P+ I+ NS+ASPT + R+ CHFG +GTWCLD SG+ +W+N + + HSVGPGSSPV+ + +I+ CDGID QF+ L+ TG Sbjct: 30 WPGFRGPQGNGHAARDARVPIDFGEQQGLVWKQPITGTGWSSPVIADGRIWLTTADTTEASEQQVAERIAADKQNKTKAIAGTAVLSVVCVDLETGQTLVQRTLGHIDAPEPIHATNSFASPTPVLRDGRLYCHFGTFGTWCLDADSGETIWENRIPLQHSVGPGSSPVLYRDRLILVCDGIDDQFIVALDAATG 224
BLAST of mRNA_P-canaliculata_contig98344.23939.1 vs. uniprot
Match: A0A848WV16_9BACT (PQQ-binding-like beta-propeller repeat protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A848WV16_9BACT) HSP 1 Score: 189 bits (479), Expect = 1.210e-54 Identity = 98/199 (49.25%), Postives = 132/199 (66.33%), Query Frame = 1 Query: 22 WNQFRGPDGSGTSSATNVPVTFSKS-NTLWQTAIPGTGWSSPVFTDGHIWLTTAETTKATQEQ---IAAKTRDVQFAKIKT--VAGSVTLRAICVDANTGSILHNLLLREINDPDLINPLNSYASPTAAINGQRVICHFGNYGTWCLDNTSGKILWQNALIVDHSVGPGSSPVIADNVVIIACDGIDKQFVTGLNLETG 600 W QFRGPDG+G + A NVP FS S N W+T +PG GWSSPV DG IWLTTA +AT+E+ I AK + ++ K K VA +V L+ I D +G I + L ++ P+ I+ LNSYASPT I+G +I HFG +GT+CL+ SG+I+WQ L + H+VGPGSSP I +++++ CDG+D Q+VT LN TG Sbjct: 26 WPQFRGPDGNGIADADNVPAKFSDSDNVKWKTPLPGKGWSSPVVADGKIWLTTAVEIQATEEEQKAIMAK-QGIEEKKFKQLQVAKNVILKLIQADFESGKIEREIELIKLEAPETIHSLNSYASPTPVIDGPNIIAHFGTFGTYCLNRESGEIVWQERLPIQHNVGPGSSPFIHGDLLVLICDGVDVQYVTALNKNTG 223 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98344.23939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig98344.23939.1 >prot_P-canaliculata_contig98344.23939.1 ID=prot_P-canaliculata_contig98344.23939.1|Name=mRNA_P-canaliculata_contig98344.23939.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=103bp MAVARRRRQTFPSRFPNQIRFGKPRFLVPVGPVPFSQTDTSGLPPQKPPKback to top mRNA from alignment at P-canaliculata_contig98344:2..601- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig98344.23939.1 ID=mRNA_P-canaliculata_contig98344.23939.1|Name=mRNA_P-canaliculata_contig98344.23939.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=600bp|location=Sequence derived from alignment at P-canaliculata_contig98344:2..601- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig98344:2..601- >mRNA_P-canaliculata_contig98344.23939.1 ID=mRNA_P-canaliculata_contig98344.23939.1|Name=mRNA_P-canaliculata_contig98344.23939.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at P-canaliculata_contig98344:2..601- (Pelvetia canaliculata dioecious)back to top |