mRNA_P-canaliculata_contig98344.23939.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_P-canaliculata_contig98344.23939.1 vs. uniprot
Match: A0A5C5ZQ85_9BACT (Outer membrane biogenesis protein BamB n=1 Tax=Stieleria varia TaxID=2528005 RepID=A0A5C5ZQ85_9BACT)

HSP 1 Score: 216 bits (550), Expect = 2.990e-65
Identity = 104/193 (53.89%), Postives = 135/193 (69.95%), Query Frame = 1

Query:   22 WNQFRGPDGSGTSSATNVPVTFSKSNTLWQTAIPGTGWSSPVFTDGHIWLTTAETTKATQEQIAAKTRDVQFAKIKTVAGSVTLRAICVDANTGSILHNLLLREINDPDLINPLNSYASPTAAINGQRVICHFGNYGTWCLDNTSGKILWQNALIVDHSVGPGSSPVIADNVVIIACDGIDKQFVTGLNLETG 600
            W QFRGP G G +S+ +V + F      ++T + G GWSSPV     +WLT+A  T+ATQEQ  AK   VQ A +K VAGS+ L A CVDA +G IL    L +I DP+ I+P+NSYASPT A+ G R+ICHFG YGTWCLD T+G+ +W   L+VD SVGPGSSP++ D++V++ CDGIDKQFV G++L  G
Sbjct:   33 WGQFRGPQGMGVASSDSVGLNFE--TPAFRTPLRGVGWSSPVTDGQRVWLTSAIVTEATQEQRKAKLAKVQMANMKDVAGSIELLAQCVDATSGEILFEKSLGKIGDPNPIHPMNSYASPTPALVGDRLICHFGGYGTWCLDATTGETIWTQRLVVDDSVGPGSSPIVVDDIVLLVCDGIDKQFVAGVSLSEG 223

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BLAST of mRNA_P-canaliculata_contig98344.23939.1 vs. uniprot
Match: A0A3M1MBE2_9BACT (Serine/threonine protein kinase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1MBE2_9BACT)

HSP 1 Score: 213 bits (543), Expect = 3.670e-64
Identity = 103/194 (53.09%), Postives = 131/194 (67.53%), Query Frame = 1

Query:   22 WNQFRGPDGSGTSSATNVPVTFSKSNTL-WQTAIPGTGWSSPVFTDGHIWLTTAETTKATQEQIAAKTRDVQFAKIKTVAGSVTLRAICVDANTGSILHNLLLREINDPDLINPLNSYASPTAAINGQRVICHFGNYGTWCLDNTSGKILWQNALIVDHSVGPGSSPVIADNVVIIACDGIDKQFVTGLNLETG 600
            W +FRGP G G +++   PV F     L W+T I G GWSSPV  DG IWLTTA    A++ +  AK         K +AGSVT +AICVD ++G ++H++ L   +DPD INPLNSYASPT  I+G RVIC FGNYGTW LD  SG+ +W+    VD+SVGPGSSPV+  ++VI+ CDGID+QFV GL+  TG
Sbjct:   33 WPRFRGPSGQGVATSGQAPVQFGLGRNLRWKTPIEGQGWSSPVIADGQIWLTTAIAIPASEAERQAKLAGKTAGGPKELAGSVTFKAICVDLDSGQVIHSITLATEDDPDPINPLNSYASPTPVIDGDRVICDFGNYGTWALDRDSGETIWKTKYDVDYSVGPGSSPVVVGDIVILVCDGIDQQFVVGLDKRTG 226

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BLAST of mRNA_P-canaliculata_contig98344.23939.1 vs. uniprot
Match: A0A257W137_9BACT (Serine/threonine protein kinase (Fragment) n=1 Tax=Planctomycetales bacterium 12-60-4 TaxID=1970541 RepID=A0A257W137_9BACT)

HSP 1 Score: 202 bits (513), Expect = 2.580e-62
Identity = 98/203 (48.28%), Postives = 139/203 (68.47%), Query Frame = 1

Query:    4 VGSAEDWNQFRGPDGSGTSSATNVPVTFSKSNTL-WQTAIPGTGWSSPVFTDGHIWLTTAETTKATQEQIAA---KTRDVQFAKIKTVAGSVTLRAICVDANTGSILHNLLLREINDPDLINPLNSYASPTAAINGQRVICHFGNYGTWCLDNTSGKILWQNALIVDHSVGPGSSPVIADNVVIIACDGIDKQFVTGLNLETG 600
            + S  +W QFRGP+G G ++A N+P  +S+   + W++AIPG GWSSPV  DG +W+TTA    AT E++ A   K R    A   T+ GS+TLRA+ VD ++G I+HN+ L E+ DP  ++ LNSYASP+  +   R++CHFG +GT C+D   GKILW+ +L  DHSVGPGSSP++ +++VII CDG + Q+V  L+L TG
Sbjct:   16 LASGVEWPQFRGPNGDGHTAAVNLPTEWSEDQGIAWKSAIPGRGWSSPVIGDGLVWVTTAVEHTATSEELEAQKTKLRGNPMANQMTLVGSITLRAVAVDLDSGKIVHNIRLFEVKDPQPVHSLNSYASPSPLLVENRLVCHFGAFGTACVDTADGKILWKASLPNDHSVGPGSSPIVFEDLVIIPCDGTESQYVAALDLYTG 218

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BLAST of mRNA_P-canaliculata_contig98344.23939.1 vs. uniprot
Match: A0A5C6EVR3_9BACT (Outer membrane biogenesis protein BamB n=1 Tax=Rubripirellula reticaptiva TaxID=2528013 RepID=A0A5C6EVR3_9BACT)

HSP 1 Score: 209 bits (531), Expect = 2.880e-62
Identity = 109/195 (55.90%), Postives = 131/195 (67.18%), Query Frame = 1

Query:   22 WNQFRGPDGSGTSSATNVPVTFSKSN-TLWQTAIPGTGWSSPVFTDGHI-WLTTAETTKATQEQIAAKTRDVQFAKIKTVAGSVTLRAICVDANTGSILHNLLLREINDPDLINPLNSYASPTAAINGQRVICHFGNYGTWCLDNTSGKILWQNALIVDHSVGPGSSPVIADNVVIIACDGIDKQFVTGLNLETG 600
            W QFRGPDGSG S  +NV +     N   W+T   G GWSSPV TDG+I W+T A+ T AT EQ      DVQ A +K VAGSV L AI +DA TG  LH + L ++ +P  I+P+N YASPT AI+G RV+ HFG YGTWCLD  SG +LWQ   +VD SVGPGSSPVI    VI+ CDG+DKQFV  ++L TG
Sbjct:   39 WTQFRGPDGSGISENSNVELQIDPLNGAAWRTETLGHGWSSPV-TDGNIVWMTAAKVTLATAEQKKQALADVQLADMKDVAGSVELLAIALDAKTGKTLHVIELGQVAEPKPIHPMNGYASPTPAIDGDRVVVHFGQYGTWCLDLQSGDVLWQRTFVVDDSVGPGSSPVIHQGNVILTCDGMDKQFVVAVSLATG 232

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BLAST of mRNA_P-canaliculata_contig98344.23939.1 vs. uniprot
Match: UPI0014226B40 (PQQ-binding-like beta-propeller repeat protein n=1 Tax=Rubinisphaera sp. JC658 TaxID=2713176 RepID=UPI0014226B40)

HSP 1 Score: 199 bits (505), Expect = 1.410e-58
Identity = 99/197 (50.25%), Postives = 136/197 (69.04%), Query Frame = 1

Query:   16 EDWNQFRGPDGSGTSSATNVPVTFSKS-NTLWQTAIPGTGWSSPVFTDGHIWLTTAETTKATQEQIAAKTRDVQFAKIKTVAGSVTLRAICVDANTGSILHNLLLREINDPDLINPLNSYASPTAAINGQRVICHFGNYGTWCLDNTSGKILW-QNALIVDHSVGPGSSPVIADNVVIIACDGIDKQFVTGLNLETG 600
            E W QFRGPDG+G   ATN+PV +S+S N  W+TAIPG G SSPV  DG +WLTTA     T+ +  A+   V+ ++   + GS++LRAICVDA +G IL N+ +  I +P+ I+ LNSYASPT  + G+R+ CHFG YGT CLD+ +G+ +W Q  L VDH  GPG+SP++ ++++I   DGID+QFV  L+  TG
Sbjct:   23 ESWPQFRGPDGNGHGDATNLPVEWSESENVSWKTAIPGDGHSSPVIADGRVWLTTAVAETLTEAEKKARLAKVKNSRGLELVGSLSLRAICVDAESGKILQNVEVFNIENPEPIHSLNSYASPTPVVEGERLFCHFGTYGTACLDSKTGEKVWEQRTLTVDHQNGPGASPIVWNDLLIAQYDGIDRQFVVALDKRTG 219

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BLAST of mRNA_P-canaliculata_contig98344.23939.1 vs. uniprot
Match: A0A353BFA4_9PLAN (Serine/threonine protein kinase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A353BFA4_9PLAN)

HSP 1 Score: 195 bits (496), Expect = 3.610e-57
Identity = 91/200 (45.50%), Postives = 125/200 (62.50%), Query Frame = 1

Query:    1 SVGSAEDWNQFRGPDGSGTSSATNVPVTFSKSNTLWQTAIPGTGWSSPVFTDGHIWLTTAETTKATQEQIAAKTRDVQFAKIKTVAGSVTLRAICVDANTGSILHNLLLREINDPDLINPLNSYASPTAAINGQRVICHFGNYGTWCLDNTSGKILWQNALIVDHSVGPGSSPVIADNVVIIACDGIDKQFVTGLNLETG 600
            SV + + W Q+RGP G G +    +P  F   +  W+  + G GWS+P    G IWLTTA  T AT+E+ AA+        +K VA  + LRA+C+    G +LH+L L  I  PD INPLN+YASP+  I+G  V+ HFG+ GTWC+   +G+++WQ  + V HSVG GSSP + D+VV++ CDG+DKQFV  LN  TG
Sbjct:   28 SVHAQDSWWQWRGPGGQGHAQNCRIPTQFDVKDATWKYDVAGKGWSTPAVDSGMIWLTTAIVTPATEEETAARLAGDPLKDMKEVASEIELRALCLRQENGRVLHDLALGRIKAPDPINPLNTYASPSPVIDGDNVLLHFGDLGTWCVKMVTGEVVWQRRIRVQHSVGAGSSPFVIDDVVVLVCDGVDKQFVVALNKNTG 227

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BLAST of mRNA_P-canaliculata_contig98344.23939.1 vs. uniprot
Match: A3ZQ52_9BACT (Probable serine/threonine protein kinase afsK n=1 Tax=Blastopirellula marina DSM 3645 TaxID=314230 RepID=A3ZQ52_9BACT)

HSP 1 Score: 195 bits (495), Expect = 4.640e-57
Identity = 99/198 (50.00%), Postives = 134/198 (67.68%), Query Frame = 1

Query:   16 EDWNQFRGPDGSGTSSATNVPVTFSKS-NTLWQTAIPGTGWSSPVFTDGHIWLTTAETTKATQEQIAAKTRDV-QFAKIKT-VAGSVTLRAICVDANTGSILHNLLLREINDPDLINPLNSYASPTAAINGQRVICHFGNYGTWCLDNTSGKILWQNALIVDHSVGPGSSPVIADNVVIIACDGIDKQFVTGLNLETG 600
            + W QFRG  G G S ATNVP+ +S++ N  W+T I G GWSSPV  +G +WLTTA TT+A++E    K +   +F ++ + +A S+ LRAI +D  TG I   + L  I DPD I+  NSYASPT  + G R+ CHFG YGT C+D  +GK++W+N L + H+VGPGSSPV+ D V+I+ CDG D+Q+V GLN  TG
Sbjct:   25 DSWPQFRGASGDGVSEATNVPLKWSEAENVAWKTPIEGKGWSSPVLANGKLWLTTAITTEASKEAFEKKLKGKPKFQQMTSELAASIQLRAIEIDYATGEIGKQVDLFYIEDPDPIHSTNSYASPTPVLEGDRLYCHFGTYGTCCVDTITGKLVWKNQLPLQHNVGPGSSPVLHDGVMILTCDGADQQYVCGLNATTG 222

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BLAST of mRNA_P-canaliculata_contig98344.23939.1 vs. uniprot
Match: A0A5B1CMV0_9BACT (Outer membrane biogenesis protein BamB n=2 Tax=Rubripirellula obstinata TaxID=406547 RepID=A0A5B1CMV0_9BACT)

HSP 1 Score: 196 bits (497), Expect = 4.700e-57
Identity = 95/202 (47.03%), Postives = 132/202 (65.35%), Query Frame = 1

Query:    1 SVGSAED-WNQFRGPDGSGTSSATNVPVTFSKS-NTLWQTAIPGTGWSSPVFTDGHIWLTTAETTKATQEQIAAKTRDVQFAKIKTVAGSVTLRAICVDANTGSILHNLLLREINDPDLINPLNSYASPTAAINGQRVICHFGNYGTWCLDNTSGKILWQNALIVDHSVGPGSSPVIADNVVIIACDGIDKQFVTGLNLETG 600
            S+  AE+ W QFRGPD SG +++  V    S   N +W+T     GWSSP+     +W+T+A T  AT EQ A K     FA +K V  SV + A+C+D NTG I+H++ L  I  P+ INP+NS+ASPT   +G RV+ HFG YGT+CL+  +G ++W+  LI+D SVGPGSS  I D +V+I CDG+D Q+V GL+L++G
Sbjct:   51 SIAKAEEPWRQFRGPDRSGVAASDEVTFDLSPGKNVVWRTETKHVGWSSPITDGKRLWMTSARTVAATPEQKAKKLEGATFAGLKDVVTSVDIFAVCLDVNTGEIVHHIRLDTIESPNSINPMNSFASPTGVWSGDRVVLHFGRYGTYCLNANTGDVIWKERLIIDDSVGPGSSLAIHDGIVVIPCDGMDVQYVAGLSLQSG 252

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BLAST of mRNA_P-canaliculata_contig98344.23939.1 vs. uniprot
Match: A0A5B9QWS8_9BACT (Outer membrane biogenesis protein BamB n=1 Tax=Roseimaritima ulvae TaxID=980254 RepID=A0A5B9QWS8_9BACT)

HSP 1 Score: 189 bits (480), Expect = 8.420e-55
Identity = 91/195 (46.67%), Postives = 126/195 (64.62%), Query Frame = 1

Query:   22 WNQFRGPDGSGTSSA-TNVPVTFSKSNTL-WQTAIPGTGWSSPVFTDGHIWLTTAETTKATQEQIAAKTRDVQFAKIKTVAGSVTLRAICVDANTGSILHNLLLREINDPDLINPLNSYASPTAAINGQRVICHFGNYGTWCLDNTSGKILWQNALIVDHSVGPGSSPVIADNVVIIACDGIDKQFVTGLNLETG 600
            W  FRGP G+G ++    VP+ F +   L W+  I GTGWSSPV  DG IWLTTA+TT+A+++Q+A +    +  K K +AG+  L  +CVD  TG  L    L  I+ P+ I+  NS+ASPT  +   R+ CHFG +GTWCLD  SG+ +W+N + + HSVGPGSSPV+  + +I+ CDGID QF+  L+  TG
Sbjct:   30 WPGFRGPQGNGHAARDARVPIDFGEQQGLVWKQPITGTGWSSPVIADGRIWLTTADTTEASEQQVAERIAADKQNKTKAIAGTAVLSVVCVDLETGQTLVQRTLGHIDAPEPIHATNSFASPTPVLRDGRLYCHFGTFGTWCLDADSGETIWENRIPLQHSVGPGSSPVLYRDRLILVCDGIDDQFIVALDAATG 224

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BLAST of mRNA_P-canaliculata_contig98344.23939.1 vs. uniprot
Match: A0A848WV16_9BACT (PQQ-binding-like beta-propeller repeat protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A848WV16_9BACT)

HSP 1 Score: 189 bits (479), Expect = 1.210e-54
Identity = 98/199 (49.25%), Postives = 132/199 (66.33%), Query Frame = 1

Query:   22 WNQFRGPDGSGTSSATNVPVTFSKS-NTLWQTAIPGTGWSSPVFTDGHIWLTTAETTKATQEQ---IAAKTRDVQFAKIKT--VAGSVTLRAICVDANTGSILHNLLLREINDPDLINPLNSYASPTAAINGQRVICHFGNYGTWCLDNTSGKILWQNALIVDHSVGPGSSPVIADNVVIIACDGIDKQFVTGLNLETG 600
            W QFRGPDG+G + A NVP  FS S N  W+T +PG GWSSPV  DG IWLTTA   +AT+E+   I AK + ++  K K   VA +V L+ I  D  +G I   + L ++  P+ I+ LNSYASPT  I+G  +I HFG +GT+CL+  SG+I+WQ  L + H+VGPGSSP I  +++++ CDG+D Q+VT LN  TG
Sbjct:   26 WPQFRGPDGNGIADADNVPAKFSDSDNVKWKTPLPGKGWSSPVVADGKIWLTTAVEIQATEEEQKAIMAK-QGIEEKKFKQLQVAKNVILKLIQADFESGKIEREIELIKLEAPETIHSLNSYASPTPVIDGPNIIAHFGTFGTYCLNRESGEIVWQERLPIQHNVGPGSSPFIHGDLLVLICDGVDVQYVTALNKNTG 223

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig98344.23939.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig98344.23939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

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POSITION

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Match Name	E-value	Identity	Description
A0A5C5ZQ85_9BACT	2.990e-65	53.89	Outer membrane biogenesis protein BamB n=1 Tax=Sti...	[more]
A0A3M1MBE2_9BACT	3.670e-64	53.09	Serine/threonine protein kinase n=1 Tax=Planctomyc...	[more]
A0A257W137_9BACT	2.580e-62	48.28	Serine/threonine protein kinase (Fragment) n=1 Tax...	[more]
A0A5C6EVR3_9BACT	2.880e-62	55.90	Outer membrane biogenesis protein BamB n=1 Tax=Rub...	[more]
UPI0014226B40	1.410e-58	50.25	PQQ-binding-like beta-propeller repeat protein n=1...	[more]
A0A353BFA4_9PLAN	3.610e-57	45.50	Serine/threonine protein kinase n=1 Tax=Planctomyc...	[more]
A3ZQ52_9BACT	4.640e-57	50.00	Probable serine/threonine protein kinase afsK n=1 ...	[more]
A0A5B1CMV0_9BACT	4.700e-57	47.03	Outer membrane biogenesis protein BamB n=2 Tax=Rub...	[more]
A0A5B9QWS8_9BACT	8.420e-55	46.67	Outer membrane biogenesis protein BamB n=1 Tax=Ros...	[more]
A0A848WV16_9BACT	1.210e-54	49.25	PQQ-binding-like beta-propeller repeat protein n=1...	[more]

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Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-canaliculata_contig98344:2..601-
coding sequence from alignment at P-canaliculata_contig98344:2..601-

protein sequence of mRNA_P-canaliculata_contig98344.23939.1

>prot_P-canaliculata_contig98344.23939.1 ID=prot_P-canaliculata_contig98344.23939.1|Name=mRNA_P-canaliculata_contig98344.23939.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=103bp
MAVARRRRQTFPSRFPNQIRFGKPRFLVPVGPVPFSQTDTSGLPPQKPPK
QHKNKSLPRLATSNLRKSRPSPGVSRFAPFVSMQTQVASSTTCCCVRLMT
PT*

mRNA from alignment at P-canaliculata_contig98344:2..601-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-canaliculata_contig98344.23939.1 ID=mRNA_P-canaliculata_contig98344.23939.1|Name=mRNA_P-canaliculata_contig98344.23939.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=600bp|location=Sequence derived from alignment at P-canaliculata_contig98344:2..601- (Pelvetia canaliculata dioecious)
TCAGTCGGATCAGCAGAAGACTGGAATCAATTTCGTGGACCAGATGGCAG
TGGCACGTCGTCGGCGACAAACGTTCCCGTCACGTTTTCCAAATCAAATA
CGCTTTGGCAAACCGCGATTCCTGGTACCGGTTGGTCCAGTCCCGTTTTC
ACAGACGGACACATCTGGCTTACCACCGCAGAAACCACCAAAGCAACACA
AGAACAAATCGCTGCCAAGACTCGCGACGTCCAATTTGCGAAAATCAAGA
CCGTCGCCGGGAGTGTCACGCTTCGCGCCATTTGTGTCGATGCAAACACA
GGTAGCATCCTCCACAACTTGCTGCTGCGTGAGATTAATGACCCCGACCT
AATCAATCCACTCAACTCTTACGCTTCCCCAACCGCCGCCATCAATGGCC
AACGAGTGATCTGTCACTTTGGTAATTACGGTACCTGGTGTCTGGACAAT
ACGAGCGGCAAAATTCTTTGGCAAAACGCTTTGATCGTCGACCACAGTGT
CGGCCCGGGCAGTTCGCCTGTGATTGCCGACAATGTGGTAATAATCGCTT
GCGATGGAATTGACAAGCAATTCGTTACAGGCTTGAACCTGGAAACTGGA

Coding sequence (CDS) from alignment at P-canaliculata_contig98344:2..601-

>mRNA_P-canaliculata_contig98344.23939.1 ID=mRNA_P-canaliculata_contig98344.23939.1|Name=mRNA_P-canaliculata_contig98344.23939.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at P-canaliculata_contig98344:2..601- (Pelvetia canaliculata dioecious)
ATGGCAGTGGCACGTCGTCGGCGACAAACGTTCCCGTCACGTTTTCCAAA
TCAAATACGCTTTGGCAAACCGCGATTCCTGGTACCGGTTGGTCCAGTCC
CGTTTTCACAGACGGACACATCTGGCTTACCACCGCAGAAACCACCAAAG
CAACACAAGAACAAATCGCTGCCAAGACTCGCGACGTCCAATTTGCGAAA
ATCAAGACCGTCGCCGGGAGTGTCACGCTTCGCGCCATTTGTGTCGATGC
AAACACAGGTAGCATCCTCCACAACTTGCTGCTGCGTGAGATTAATGACC
CCGACCTAAATGGCAGTGGCACGTCGTCGGCGACAAACGTTCCCGTCACG
TTTTCCAAATCAAATACGCTTTGGCAAACCGCGATTCCTGGTACCGGTTG
GTCCAGTCCCGTTTTCACAGACGGACACATCTGGCTTACCACCGCAGAAA
CCACCAAAGCAACACAAGAACAAATCGCTGCCAAGACTCGCGACGTCCAA
TTTGCGAAAATCAAGACCGTCGCCGGGAGTGTCACGCTTCGCGCCATTTG
TGTCGATGCAAACACAGGTAGCATCCTCCACAACTTGCTGCTGCGTGAGA
TTAATGACCCCGACCTAA