mRNA_P-canaliculata_contig9833.23938.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9833.23938.1
Unique NamemRNA_P-canaliculata_contig9833.23938.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig9833.23938.1 vs. uniprot
Match: A0A6H5KC01_9PHAE (SUZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC01_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 7.130e-10
Identity = 45/69 (65.22%), Postives = 48/69 (69.57%), Query Frame = -1 
Query:   37 AAGKRTEREAKQAGGATTSQGPDGTAGFGRGRGKPLP-----------SAGR-GSRGERSAGGAAAGEG 207
            AAGKRT+REAKQAGGA TSQGPDGT GFG GRGKP+P           +AGR G RG R  GGA A EG
Sbjct:  494 AAGKRTDREAKQAGGAVTSQGPDGTMGFGSGRGKPVPGXXXXXXXXXAAAGREGERGVREEGGAGAAEG 562
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BLAST of mRNA_P-canaliculata_contig9833.23938.1 vs. uniprot
Match: D8LM72_ECTSI (R3H domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM72_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 1.070e-8
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = -1 
Query:   88 AAGKRTEREAKQAGGATTSQGPDGTAGFGRGRGKPLPSAG 207
            AAGKRT+REAKQAGGA TSQGPDGT GFG GRGKP+P  G
Sbjct:  603 AAGKRTDREAKQAGGAVTSQGPDGTMGFGSGRGKPVPGGG 642
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9833.23938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KC01_9PHAE7.130e-1065.22SUZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LM72_ECTSI1.070e-882.50R3H domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9833contigP-canaliculata_contig9833:4385..5023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size640
Cds size519
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817344.9596906-CDS-P-canaliculata_contig9833:4384..49031622817344.9596906-CDS-P-canaliculata_contig9833:4384..4903Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9833 4385..4903 +
1693495236.6062326-CDS-P-canaliculata_contig9833:4384..49031693495236.6062326-CDS-P-canaliculata_contig9833:4384..4903Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9833 4385..4903 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817344.9770625-UTR-P-canaliculata_contig9833:4903..50231622817344.9770625-UTR-P-canaliculata_contig9833:4903..5023Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9833 4904..5023 +
1693495236.618956-UTR-P-canaliculata_contig9833:4903..50231693495236.618956-UTR-P-canaliculata_contig9833:4903..5023Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9833 4904..5023 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9833.23938.1prot_P-canaliculata_contig9833.23938.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9833 4385..4903 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9833.23938.1

>prot_P-canaliculata_contig9833.23938.1 ID=prot_P-canaliculata_contig9833.23938.1|Name=mRNA_P-canaliculata_contig9833.23938.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=173bp
PVGTFRALNPIDTLACGGTSGAALSSAPSSRRWQGLSSSAPKARRTIRTL
RGGSSARLLRFPFRPLSGCRRRRRQACCDGRRCRRRRSRRCACAGSSPSS
RTWPSAGAAGTLALAINPRRRRRWGGCNDRHRFYGRDILFLAVRRHGHLH
RDHSGNVASSLLLYRLFAFDPR*
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mRNA from alignment at P-canaliculata_contig9833:4385..5023+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9833.23938.1 ID=mRNA_P-canaliculata_contig9833.23938.1|Name=mRNA_P-canaliculata_contig9833.23938.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=639bp|location=Sequence derived from alignment at P-canaliculata_contig9833:4385..5023+ (Pelvetia canaliculata dioecious)
CCGGTTGGAACCTTCCGAGCCCTGAATCCGATTGACACCCTCGCCTGCGG
CGGCACCTCCGGCGCTGCGCTCTCCTCTGCTCCCTCTTCCCGCCGATGGC
AGGGGCTTTCCTCGTCCGCGCCCAAAGCCCGCCGTACCATCCGGACCCTG
CGAGGTGGTAGCTCCGCCCGCCTGCTTCGCTTCCCGTTCCGTCCGCTTTC
CGGCTGCCGGCGGCGTCGTCGTCAAGCCTGTTGCGATGGGCGTCGTTGCC
GCCGTCGCCGCAGCCGTCGATGCGCTTGTGCTGGTTCCTCCCCTTCCTCC
AGAACCTGGCCCTCTGCCGGGGCCGCTGGCACCCTCGCCCTTGCTATCAA
CCCCCGTCGCCGCCGCCGTTGGGGGGGGTGCAACGACCGTCACCGCTTTT
ACGGAAGGGACATTCTTTTTTTGGCCGTTCGCCGCCACGGTCACCTCCAC
CGGGACCACAGCGGGAACGTCGCCAGCAGTCTTCTTCTTTACCGCCTCTT
CGCTTTCGACCCGCGCTGAAGTAGCCCCTCCCAGTGCCGGCGGCGCCGCG
GGAGTTTCCTCTTCAACTGTCGCCGCCGTCAAAGAAGCCCCCGGCGACCC
GGCTTCCGCCGTACCTTCGCCGGCCGCTGCCGCGGCAGC
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Coding sequence (CDS) from alignment at P-canaliculata_contig9833:4385..5023+

>mRNA_P-canaliculata_contig9833.23938.1 ID=mRNA_P-canaliculata_contig9833.23938.1|Name=mRNA_P-canaliculata_contig9833.23938.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1038bp|location=Sequence derived from alignment at P-canaliculata_contig9833:4385..5023+ (Pelvetia canaliculata dioecious)
CCGGTTGGAACCTTCCGAGCCCTGAATCCGATTGACACCCTCGCCTGCGG
CGGCACCTCCGGCGCTGCGCTCTCCTCTGCTCCCTCTTCCCGCCGATGGC
AGGGGCTTTCCTCGTCCGCGCCCAAAGCCCGCCGTACCATCCGGACCCTG
CGAGGTGGTAGCTCCGCCCGCCTGCTTCGCTTCCCGTTCCGTCCGCTTTC
CGGCTGCCGGCGGCGTCGTCGTCAAGCCTGTTGCGATGGGCGTCGTTGCC
GCCGTCGCCGCAGCCGTCGATGCGCTTGTGCTGGTTCCTCCCCTTCCTCC
AGAACCTGGCCCTCTGCCGGGGCCGCTGGCACCCTCGCCCTTGCTATCAA
CCCCCGTCGCCGCCGCCGTTGGGGGGGGTGCAACGACCGTCACCGCTTTT
ACGGAAGGGACATTCTTTTTTTGGCCGTTCGCCGCCACGGTCACCTCCAC
CGGGACCACAGCGGGAACGTCGCCAGCAGTCTTCTTCTTTACCGCCTCTT
CGCTTTCGACCCGCGCTGACCGGTTGGAACCTTCCGAGCCCTGAATCCGA
TTGACACCCTCGCCTGCGGCGGCACCTCCGGCGCTGCGCTCTCCTCTGCT
CCCTCTTCCCGCCGATGGCAGGGGCTTTCCTCGTCCGCGCCCAAAGCCCG
CCGTACCATCCGGACCCTGCGAGGTGGTAGCTCCGCCCGCCTGCTTCGCT
TCCCGTTCCGTCCGCTTTCCGGCTGCCGGCGGCGTCGTCGTCAAGCCTGT
TGCGATGGGCGTCGTTGCCGCCGTCGCCGCAGCCGTCGATGCGCTTGTGC
TGGTTCCTCCCCTTCCTCCAGAACCTGGCCCTCTGCCGGGGCCGCTGGCA
CCCTCGCCCTTGCTATCAACCCCCGTCGCCGCCGCCGTTGGGGGGGGTGC
AACGACCGTCACCGCTTTTACGGAAGGGACATTCTTTTTTTGGCCGTTCG
CCGCCACGGTCACCTCCACCGGGACCACAGCGGGAACGTCGCCAGCAGTC
TTCTTCTTTACCGCCTCTTCGCTTTCGACCCGCGCTGA
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