mRNA_P-canaliculata_contig9833.23938.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_P-canaliculata_contig9833.23938.1 vs. uniprot
Match: A0A6H5KC01_9PHAE (SUZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC01_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 7.130e-10 Identity = 45/69 (65.22%), Postives = 48/69 (69.57%), Query Frame = -1 Query: 37 AAGKRTEREAKQAGGATTSQGPDGTAGFGRGRGKPLP-----------SAGR-GSRGERSAGGAAAGEG 207
AAGKRT+REAKQAGGA TSQGPDGT GFG GRGKP+P +AGR G RG R GGA A EG
Sbjct: 494 AAGKRTDREAKQAGGAVTSQGPDGTMGFGSGRGKPVPGXXXXXXXXXAAAGREGERGVREEGGAGAAEG 562
BLAST of mRNA_P-canaliculata_contig9833.23938.1 vs. uniprot
Match: D8LM72_ECTSI (R3H domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM72_ECTSI) HSP 1 Score: 65.1 bits (157), Expect = 1.070e-8 Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = -1 Query: 88 AAGKRTEREAKQAGGATTSQGPDGTAGFGRGRGKPLPSAG 207
AAGKRT+REAKQAGGA TSQGPDGT GFG GRGKP+P G
Sbjct: 603 AAGKRTDREAKQAGGAVTSQGPDGTMGFGSGRGKPVPGGG 642 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9833.23938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9833.23938.1 >prot_P-canaliculata_contig9833.23938.1 ID=prot_P-canaliculata_contig9833.23938.1|Name=mRNA_P-canaliculata_contig9833.23938.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=173bp PVGTFRALNPIDTLACGGTSGAALSSAPSSRRWQGLSSSAPKARRTIRTLback to top mRNA from alignment at P-canaliculata_contig9833:4385..5023+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig9833.23938.1 ID=mRNA_P-canaliculata_contig9833.23938.1|Name=mRNA_P-canaliculata_contig9833.23938.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=639bp|location=Sequence derived from alignment at P-canaliculata_contig9833:4385..5023+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9833:4385..5023+ >mRNA_P-canaliculata_contig9833.23938.1 ID=mRNA_P-canaliculata_contig9833.23938.1|Name=mRNA_P-canaliculata_contig9833.23938.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1038bp|location=Sequence derived from alignment at P-canaliculata_contig9833:4385..5023+ (Pelvetia canaliculata dioecious)back to top |