mRNA_P-canaliculata_contig9833.23937.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9833.23937.1
Unique NamemRNA_P-canaliculata_contig9833.23937.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig9833.23937.1 vs. uniprot
Match: A0A6H5KC01_9PHAE (SUZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC01_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 8.040e-32
Identity = 84/127 (66.14%), Postives = 94/127 (74.02%), Query Frame = 1 
Query:   13 RGSRKAPVNAGEWKGQRGVQRNRMAEKSDPDFVRNYDNYRPSFAPFRQLADPGGXXXXXXXXXXXXXXXXXXXXXXXXXXTPRMLHQHQHAIMGPAGQH--GQP-HGMMAMPTSLPG-QFRGHIPGQ 381
            RGSR+  VNAGEWKGQRG+QRNRMAEKSDPDFVRNYD+YRPSFAP+RQLADPGG       XXXXXXXXXXX        +PR+L QH HA+M  A QH  GQ  H MMA+P  + G Q RG +PGQ
Sbjct:  574 RGSRRPAVNAGEWKGQRGMQRNRMAEKSDPDFVRNYDHYRPSFAPYRQLADPGGGGGGGRGXXXXXXXXXXXQQPQP---SPRLLQQHPHAMMSAAVQHAHGQAAHAMMAIPAGMQGHQLRGQMPGQ 697
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BLAST of mRNA_P-canaliculata_contig9833.23937.1 vs. uniprot
Match: D8LM72_ECTSI (R3H domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM72_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 1.510e-24
Identity = 86/124 (69.35%), Postives = 93/124 (75.00%), Query Frame = 1 
Query:   22 RKAPVNAGEWKGQRGVQRNRMAEKSDPDFVRNYDNYRPSFAPFRQLADPGGXXXXXXXXXXXXXXXXXXXXXXXXXXTPRMLHQHQHAIMGPAGQH--GQP-HGMMAMPTSLPG-QFRGHIPGQ 381
            R+  VNAGEWKGQRG+QRNRMAEKSDPDFVRNYDNYRPSFAP+RQLADPGG     XXXXXXXXXXXXXXXXXXXXX          A+M  A QH  GQ  H MMA+P  + G Q RG +PGQ
Sbjct:  694 RRPAVNAGEWKGQRGMQRNRMAEKSDPDFVRNYDNYRPSFAPYRQLADPGGRGGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXX---AMMSAAVQHAHGQAAHAMMAIPAGMQGHQLRGQMPGQ 814
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9833.23937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KC01_9PHAE8.040e-3266.14SUZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LM72_ECTSI1.510e-2469.35R3H domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9833contigP-canaliculata_contig9833:2510..4321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_002725.1
Exons2
Model size382
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817345.0186543-CDS-P-canaliculata_contig9833:2509..26111622817345.0186543-CDS-P-canaliculata_contig9833:2509..2611Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9833 2510..2611 -
1693495236.6307602-CDS-P-canaliculata_contig9833:2509..26111693495236.6307602-CDS-P-canaliculata_contig9833:2509..2611Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9833 2510..2611 -
1622817345.034664-CDS-P-canaliculata_contig9833:4042..43211622817345.034664-CDS-P-canaliculata_contig9833:4042..4321Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9833 4043..4321 -
1693495236.643613-CDS-P-canaliculata_contig9833:4042..43211693495236.643613-CDS-P-canaliculata_contig9833:4042..4321Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9833 4043..4321 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9833.23937.1prot_P-canaliculata_contig9833.23937.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9833 2510..4321 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9833.23937.1

>prot_P-canaliculata_contig9833.23937.1 ID=prot_P-canaliculata_contig9833.23937.1|Name=mRNA_P-canaliculata_contig9833.23937.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=127bp
GVGGRGSRKAPVNAGEWKGQRGVQRNRMAEKSDPDFVRNYDNYRPSFAPF
RQLADPGGGGGGGFAMGGGRGGMAHGHGHQPQPHTPRMLHQHQHAIMGPA
GQHGQPHGMMAMPTSLPGQFRGHIPGQ
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mRNA from alignment at P-canaliculata_contig9833:2510..4321-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9833.23937.1 ID=mRNA_P-canaliculata_contig9833.23937.1|Name=mRNA_P-canaliculata_contig9833.23937.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1812bp|location=Sequence derived from alignment at P-canaliculata_contig9833:2510..4321- (Pelvetia canaliculata dioecious)
GGCGTGGGAGGACGTGGGAGCAGGAAAGCTCCTGTGAATGCTGGAGAATG
GAAGGGTCAGCGAGGGGTGCAGCGCAACCGGATGGCGGAAAAGTCGGACC
CGGATTTTGTCCGCAACTACGATAACTATCGCCCGAGTTTCGCGCCTTTT
CGGCAGCTCGCAGACCCCGGCGGCGGTGGCGGCGGTGGGTTTGCAATGGG
CGGCGGTCGAGGGGGCATGGCTCACGGGCACGGGCACCAGCCGCAGCCGC
ATACTCCTCGGATGCTGCACCAACACCAGGTGAGTTTTTGTGGAAAAGTC
TAAACATATCTAAATCTCCCAGACATTCTCACCATTCAAGGAAATTGTGT
CGGATCGTTTGGTGGACAATACCGTCTGTTGGGATTTCAGTCTGATTCCC
CGGTGAGTTTACAGTGTTATCGTGTCGGGGGGAACTCGCCGTTACTATAC
ACTTTATCAACCAATCACCCATGTAGGGACACTAACCAACACAGGAGCAC
GAAGACGTATGCCATCGGCCTAGCTCTAGTGGAGGTTGTTAACATTTGTA
AATTGCCCGAGTCGGGAAGAGGATATCTGTCGTTGATGTCAAGATGATGG
CACCATGATGGCACGATACTGTACAGGAGTAGAGTAAGAGTAGTTATTGA
CCGTTGCGTTCGCAATAAGTGGAGGGGGTGTTCTGTAGTATTTATAGCGT
AGCTTGATCGTGTATATCGTGAGTGTACATCGAGAGGATTAGAGCGGGGG
AGTTAAAAGTCTCGACGACGGAGAAGATAGAAAGAGGCCACAAGGATTTT
CACCGTAGTTTGGAACAAAATCTAGGAGACATCAGGTACAGTTAATTCAC
ATGTTTATTAGCCGTGGTAAGGAAGCGTGGCGAAAAGGAATATACTGGTG
GGCGAGAACGCCGCCAAGGGCACCGGTTAAAGGTGCTTTGTTTTGGGCAT
TGTCATCGTCTGGGCTTATTTTCTTTAGTGTTGGCCTGAAACTTCAAGCC
GCTTTTCTTTTTACTTCAAGAACGCCTCCGCGTTCGAAAACCACAGAAGA
AAAACTAAATTCTTCATTTTGTGATCCACGTATATAGTGTTTTATAATAT
CTGCTATGCTTTTGCTGCGCGCGGGCGCTACGGCATGAGACCAGAGTCTC
TACAGGATCCACGTTGATCTGGCTGACACGATTAGCGTGGCGCTCTTGAC
GAGTGTCCGTAAAGACTTGTGGGAGTCGATTAAGCATATATATAGCTTCA
TCCGACCTTTCATTTTGGACATCCGATATATGATGACTTTAGCAGAAAAA
TGAGAATTCGCACTAAAATGTATGGGAAATAATTTGAAGCGTTCGAGGCC
CTCACGCTAATTATGGCAGCCAATCGCATGGGATGACGACCTCACAGGGG
GCTTTTACTGACACTTCAGGTTATATCGAGGAAGCATATTTTTAAAGCTT
ATTTCGGATGCGCAGTCGACATGTTTTTTTAGACGCCAAAATTTAAGCTG
GGAAAAAAATGCGAATCCTACAGAAAACCTCCTATTGCTTTTTTGTCGTT
CTCCTGGCCTCTATGGAGGAAGGAAGCAACCCGGTTTTGGCGTTGTCCGT
CGCACAGCCCCCTCGTGTCCATACGTACCAGCCATCGTAAGTTATGTCGA
CTATAGCAAAGCAGGCAACCTGTTTCCCTTTCTCTCAAATGTATGTCTCT
GTTTTGGAAGCATGCCATCATGGGACCCGCTGGCCAGCACGGGCAGCCTC
ACGGCATGATGGCGATGCCGACTTCGCTGCCGGGGCAATTTAGAGGGCAC
ATTCCGGGACAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig9833:2510..4321-

>mRNA_P-canaliculata_contig9833.23937.1 ID=mRNA_P-canaliculata_contig9833.23937.1|Name=mRNA_P-canaliculata_contig9833.23937.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at P-canaliculata_contig9833:2510..4321- (Pelvetia canaliculata dioecious)
GGCGTGGGAGGACGTGGGAGCAGGAAAGCTCCTGTGAATGCTGGAGAATG
GAAGGGTCAGCGAGGGGTGCAGCGCAACCGGATGGCGGAAAAGTCGGACC
CGGATTTTGTCCGCAACTACGATAACTATCGCCCGAGTTTCGCGCCTTTT
CGGCAGCTCGCAGACCCCGGCGGCGGTGGCGGCGGTGGGTTTGCAATGGG
CGGCGGTCGAGGGGGCATGGCTCACGGGCACGGGCACCAGCCGCAGCCGC
ATACTCCTCGGATGCTGCACCAACACCAGGGCGTGGGAGGACGTGGGAGC
AGGAAAGCTCCTGTGAATGCTGGAGAATGGAAGGGTCAGCGAGGGGTGCA
GCGCAACCGGATGGCGGAAAAGTCGGACCCGGATTTTGTCCGCAACTACG
ATAACTATCGCCCGAGTTTCGCGCCTTTTCGGCAGCTCGCAGACCCCGGC
GGCGGTGGCGGCGGTGGGTTTGCAATGGGCGGCGGTCGAGGGGGCATGGC
TCACGGGCACGGGCACCAGCCGCAGCCGCATACTCCTCGGATGCTGCACC
AACACCAGCATGCCATCATGGGACCCGCTGGCCAGCACGGGCAGCCTCAC
GGCATGATGGCGATGCCGACTTCGCTGCCGGGGCAATTTAGAGGGCACAT
TCCGGGACAGCATGCCATCATGGGACCCGCTGGCCAGCACGGGCAGCCTC
ACGGCATGATGGCGATGCCGACTTCGCTGCCGGGGCAATTTAGAGGGCAC
ATTCCGGGACAG
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