mRNA_P-canaliculata_contig9833.23937.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig9833.23937.1 vs. uniprot
Match: A0A6H5KC01_9PHAE (SUZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC01_9PHAE) HSP 1 Score: 128 bits (321), Expect = 8.040e-32 Identity = 84/127 (66.14%), Postives = 94/127 (74.02%), Query Frame = 1 Query: 13 RGSRKAPVNAGEWKGQRGVQRNRMAEKSDPDFVRNYDNYRPSFAPFRQLADPGGXXXXXXXXXXXXXXXXXXXXXXXXXXTPRMLHQHQHAIMGPAGQH--GQP-HGMMAMPTSLPG-QFRGHIPGQ 381 RGSR+ VNAGEWKGQRG+QRNRMAEKSDPDFVRNYD+YRPSFAP+RQLADPGG XXXXXXXXXXX +PR+L QH HA+M A QH GQ H MMA+P + G Q RG +PGQ Sbjct: 574 RGSRRPAVNAGEWKGQRGMQRNRMAEKSDPDFVRNYDHYRPSFAPYRQLADPGGGGGGGRGXXXXXXXXXXXQQPQP---SPRLLQQHPHAMMSAAVQHAHGQAAHAMMAIPAGMQGHQLRGQMPGQ 697
BLAST of mRNA_P-canaliculata_contig9833.23937.1 vs. uniprot
Match: D8LM72_ECTSI (R3H domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM72_ECTSI) HSP 1 Score: 107 bits (267), Expect = 1.510e-24 Identity = 86/124 (69.35%), Postives = 93/124 (75.00%), Query Frame = 1 Query: 22 RKAPVNAGEWKGQRGVQRNRMAEKSDPDFVRNYDNYRPSFAPFRQLADPGGXXXXXXXXXXXXXXXXXXXXXXXXXXTPRMLHQHQHAIMGPAGQH--GQP-HGMMAMPTSLPG-QFRGHIPGQ 381 R+ VNAGEWKGQRG+QRNRMAEKSDPDFVRNYDNYRPSFAP+RQLADPGG XXXXXXXXXXXXXXXXXXXXX A+M A QH GQ H MMA+P + G Q RG +PGQ Sbjct: 694 RRPAVNAGEWKGQRGMQRNRMAEKSDPDFVRNYDNYRPSFAPYRQLADPGGRGGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXX---AMMSAAVQHAHGQAAHAMMAIPAGMQGHQLRGQMPGQ 814 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9833.23937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9833.23937.1 >prot_P-canaliculata_contig9833.23937.1 ID=prot_P-canaliculata_contig9833.23937.1|Name=mRNA_P-canaliculata_contig9833.23937.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=127bp GVGGRGSRKAPVNAGEWKGQRGVQRNRMAEKSDPDFVRNYDNYRPSFAPFback to top mRNA from alignment at P-canaliculata_contig9833:2510..4321- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig9833.23937.1 ID=mRNA_P-canaliculata_contig9833.23937.1|Name=mRNA_P-canaliculata_contig9833.23937.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1812bp|location=Sequence derived from alignment at P-canaliculata_contig9833:2510..4321- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9833:2510..4321- >mRNA_P-canaliculata_contig9833.23937.1 ID=mRNA_P-canaliculata_contig9833.23937.1|Name=mRNA_P-canaliculata_contig9833.23937.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at P-canaliculata_contig9833:2510..4321- (Pelvetia canaliculata dioecious)back to top |