mRNA_P-canaliculata_contig9831.23936.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9831.23936.1
Unique NamemRNA_P-canaliculata_contig9831.23936.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9831.23936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9831contigP-canaliculata_contig9831:1813..2481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size317
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9831.23936.1prot_P-canaliculata_contig9831.23936.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9831 1907..2480 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817344.8784146-UTR-P-canaliculata_contig9831:1812..19061622817344.8784146-UTR-P-canaliculata_contig9831:1812..1906Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9831 1813..1906 +
1693495236.5512834-UTR-P-canaliculata_contig9831:1812..19061693495236.5512834-UTR-P-canaliculata_contig9831:1812..1906Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9831 1813..1906 +
1622817344.9210162-UTR-P-canaliculata_contig9831:2480..24811622817344.9210162-UTR-P-canaliculata_contig9831:2480..2481Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9831 2481..2481 +
1693495236.5904677-UTR-P-canaliculata_contig9831:2480..24811693495236.5904677-UTR-P-canaliculata_contig9831:2480..2481Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9831 2481..2481 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817344.8931324-CDS-P-canaliculata_contig9831:1906..20561622817344.8931324-CDS-P-canaliculata_contig9831:1906..2056Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9831 1907..2056 +
1693495236.5619168-CDS-P-canaliculata_contig9831:1906..20561693495236.5619168-CDS-P-canaliculata_contig9831:1906..2056Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9831 1907..2056 +
1622817344.9073527-CDS-P-canaliculata_contig9831:2408..24801622817344.9073527-CDS-P-canaliculata_contig9831:2408..2480Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9831 2409..2480 +
1693495236.57628-CDS-P-canaliculata_contig9831:2408..24801693495236.57628-CDS-P-canaliculata_contig9831:2408..2480Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9831 2409..2480 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9831.23936.1

>prot_P-canaliculata_contig9831.23936.1 ID=prot_P-canaliculata_contig9831.23936.1|Name=mRNA_P-canaliculata_contig9831.23936.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=74bp
MSSLPSASLMASSKGRTISQLTVQQQQLYQQQRRQFQAGGGDAGRHPQSH
FFSRQAVAYLGKPTKTCPSGKRC*
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mRNA from alignment at P-canaliculata_contig9831:1813..2481+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9831.23936.1 ID=mRNA_P-canaliculata_contig9831.23936.1|Name=mRNA_P-canaliculata_contig9831.23936.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=669bp|location=Sequence derived from alignment at P-canaliculata_contig9831:1813..2481+ (Pelvetia canaliculata dioecious)
GCTGTTTCACCAACAACAGCGCCAGCTGTAAGCGGGGCCATCGCCATCTA
CCGTGCCTCAGGCAACTACAAGCGGGGTATGTGGTACCGCTGCAATGTCT
TCGCTGCCCTCCGCAAGTCTCATGGCTTCAAGTAAGGGACGCACGATATC
ACAACTAACTGTTCAGCAGCAGCAGCTTTATCAGCAGCAACGCCGCCAGT
TTCAAGCCGGAGGCGGAGACGCCGGAAGACACCCACAATCTCACGTGAGT
CGCCTTCGTCTGCGACAGTTCGACTCTTGCCACAGTTTTATTGCGGCGTT
CCCGTGTTTTATTGCTTTCTTGCGTCTCTTTGTCCTGTTTTGCCTGGCGG
TACGTCTGACATAAAATAATTTTATTGAGCTCATTTGTCTTGATAATCAT
CCATCCCTAGAAGAGACGCCGGTTGATCCTATTAATAGCATCGCAGGGGG
TGGGACCCGGCTCTTCGCTGCGCTTTTCTTGCACAAGTTCGCTGCCGTGA
ATCTGGGTTTCTGATTACATCACGGTCCCTATTTTTACTCGCCCGCCCTC
TCCTCCTTCCCTCTCCTGCCCCCCCCCCCCCCACCCCTGCATTCAGTTTT
TCAGCCGGCAAGCAGTGGCCTATCTTGGCAAACCAACAAAGACATGCCCA
TCCGGAAAGAGGTGTTAGC
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Coding sequence (CDS) from alignment at P-canaliculata_contig9831:1813..2481+

>mRNA_P-canaliculata_contig9831.23936.1 ID=mRNA_P-canaliculata_contig9831.23936.1|Name=mRNA_P-canaliculata_contig9831.23936.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at P-canaliculata_contig9831:1813..2481+ (Pelvetia canaliculata dioecious)
ATGTCTTCGCTGCCCTCCGCAAGTCTCATGGCTTCAAGTAAGGGACGCAC
GATATCACAACTAACTGTTCAGCAGCAGCAGCTTTATCAGCAGCAACGCC
GCCAGTTTCAAGCCGGAGGCGGAGACGCCGGAAGACACCCACAATCTCAC
ATGTCTTCGCTGCCCTCCGCAAGTCTCATGGCTTCAAGTAAGGGACGCAC
GATATCACAACTAACTGTTCAGCAGCAGCAGCTTTATCAGCAGCAACGCC
GCCAGTTTCAAGCCGGAGGCGGAGACGCCGGAAGACACCCACAATCTCAC
TTTTTCAGCCGGCAAGCAGTGGCCTATCTTGGCAAACCAACAAAGACATG
CCCATCCGGAAAGAGGTGTTAGTTTTTCAGCCGGCAAGCAGTGGCCTATC
TTGGCAAACCAACAAAGACATGCCCATCCGGAAAGAGGTGTTAG
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