Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 317 |
| Cds size | 222 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817344.8784146-UTR-P-canaliculata_contig9831:1812..1906 | 1622817344.8784146-UTR-P-canaliculata_contig9831:1812..1906 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig9831 1813..1906 + |
| 1693495236.5512834-UTR-P-canaliculata_contig9831:1812..1906 | 1693495236.5512834-UTR-P-canaliculata_contig9831:1812..1906 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig9831 1813..1906 + |
| 1622817344.9210162-UTR-P-canaliculata_contig9831:2480..2481 | 1622817344.9210162-UTR-P-canaliculata_contig9831:2480..2481 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig9831 2481..2481 + |
| 1693495236.5904677-UTR-P-canaliculata_contig9831:2480..2481 | 1693495236.5904677-UTR-P-canaliculata_contig9831:2480..2481 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig9831 2481..2481 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817344.8931324-CDS-P-canaliculata_contig9831:1906..2056 | 1622817344.8931324-CDS-P-canaliculata_contig9831:1906..2056 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig9831 1907..2056 + |
| 1693495236.5619168-CDS-P-canaliculata_contig9831:1906..2056 | 1693495236.5619168-CDS-P-canaliculata_contig9831:1906..2056 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig9831 1907..2056 + |
| 1622817344.9073527-CDS-P-canaliculata_contig9831:2408..2480 | 1622817344.9073527-CDS-P-canaliculata_contig9831:2408..2480 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig9831 2409..2480 + |
| 1693495236.57628-CDS-P-canaliculata_contig9831:2408..2480 | 1693495236.57628-CDS-P-canaliculata_contig9831:2408..2480 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig9831 2409..2480 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9831.23936.1 >prot_P-canaliculata_contig9831.23936.1 ID=prot_P-canaliculata_contig9831.23936.1|Name=mRNA_P-canaliculata_contig9831.23936.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=74bp
MSSLPSASLMASSKGRTISQLTVQQQQLYQQQRRQFQAGGGDAGRHPQSH
FFSRQAVAYLGKPTKTCPSGKRC* back to topmRNA from alignment at P-canaliculata_contig9831:1813..2481+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig9831.23936.1 ID=mRNA_P-canaliculata_contig9831.23936.1|Name=mRNA_P-canaliculata_contig9831.23936.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=669bp|location=Sequence derived from alignment at P-canaliculata_contig9831:1813..2481+ (Pelvetia canaliculata dioecious)
GCTGTTTCACCAACAACAGCGCCAGCTGTAAGCGGGGCCATCGCCATCTA
CCGTGCCTCAGGCAACTACAAGCGGGGTATGTGGTACCGCTGCAATGTCT
TCGCTGCCCTCCGCAAGTCTCATGGCTTCAAGTAAGGGACGCACGATATC
ACAACTAACTGTTCAGCAGCAGCAGCTTTATCAGCAGCAACGCCGCCAGT
TTCAAGCCGGAGGCGGAGACGCCGGAAGACACCCACAATCTCACGTGAGT
CGCCTTCGTCTGCGACAGTTCGACTCTTGCCACAGTTTTATTGCGGCGTT
CCCGTGTTTTATTGCTTTCTTGCGTCTCTTTGTCCTGTTTTGCCTGGCGG
TACGTCTGACATAAAATAATTTTATTGAGCTCATTTGTCTTGATAATCAT
CCATCCCTAGAAGAGACGCCGGTTGATCCTATTAATAGCATCGCAGGGGG
TGGGACCCGGCTCTTCGCTGCGCTTTTCTTGCACAAGTTCGCTGCCGTGA
ATCTGGGTTTCTGATTACATCACGGTCCCTATTTTTACTCGCCCGCCCTC
TCCTCCTTCCCTCTCCTGCCCCCCCCCCCCCCACCCCTGCATTCAGTTTT
TCAGCCGGCAAGCAGTGGCCTATCTTGGCAAACCAACAAAGACATGCCCA
TCCGGAAAGAGGTGTTAGC back to topCoding sequence (CDS) from alignment at P-canaliculata_contig9831:1813..2481+ >mRNA_P-canaliculata_contig9831.23936.1 ID=mRNA_P-canaliculata_contig9831.23936.1|Name=mRNA_P-canaliculata_contig9831.23936.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at P-canaliculata_contig9831:1813..2481+ (Pelvetia canaliculata dioecious)
ATGTCTTCGCTGCCCTCCGCAAGTCTCATGGCTTCAAGTAAGGGACGCAC
GATATCACAACTAACTGTTCAGCAGCAGCAGCTTTATCAGCAGCAACGCC
GCCAGTTTCAAGCCGGAGGCGGAGACGCCGGAAGACACCCACAATCTCAC
ATGTCTTCGCTGCCCTCCGCAAGTCTCATGGCTTCAAGTAAGGGACGCAC
GATATCACAACTAACTGTTCAGCAGCAGCAGCTTTATCAGCAGCAACGCC
GCCAGTTTCAAGCCGGAGGCGGAGACGCCGGAAGACACCCACAATCTCAC
TTTTTCAGCCGGCAAGCAGTGGCCTATCTTGGCAAACCAACAAAGACATG
CCCATCCGGAAAGAGGTGTTAGTTTTTCAGCCGGCAAGCAGTGGCCTATC
TTGGCAAACCAACAAAGACATGCCCATCCGGAAAGAGGTGTTAG back to top
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