mRNA_P-canaliculata_contig983.23932.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig983.23932.1
Unique NamemRNA_P-canaliculata_contig983.23932.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig983.23932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig983contigP-canaliculata_contig983:12873..13226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size356
Cds size339
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817344.3001912-UTR-P-canaliculata_contig983:12872..128871622817344.3001912-UTR-P-canaliculata_contig983:12872..12887Pelvetia canaliculata dioeciousUTRP-canaliculata_contig983 12873..12887 +
1693495236.2786827-UTR-P-canaliculata_contig983:12872..128871693495236.2786827-UTR-P-canaliculata_contig983:12872..12887Pelvetia canaliculata dioeciousUTRP-canaliculata_contig983 12873..12887 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817344.3196177-CDS-P-canaliculata_contig983:12887..132261622817344.3196177-CDS-P-canaliculata_contig983:12887..13226Pelvetia canaliculata dioeciousCDSP-canaliculata_contig983 12888..13226 +
1693495236.2886922-CDS-P-canaliculata_contig983:12887..132261693495236.2886922-CDS-P-canaliculata_contig983:12887..13226Pelvetia canaliculata dioeciousCDSP-canaliculata_contig983 12888..13226 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig983.23932.1prot_P-canaliculata_contig983.23932.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig983 12888..13226 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig983.23932.1

>prot_P-canaliculata_contig983.23932.1 ID=prot_P-canaliculata_contig983.23932.1|Name=mRNA_P-canaliculata_contig983.23932.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=113bp
MVGVDGDCSVSKTANKIYINQRHASPPLSRSSVRPLSSPHATGASALPAR
PSTACPAPPHSVAAEKDCRVFTSTTRQRSRPCSCHATVPISHKSRRTDPC
DGGIYEIPSPLHR
back to top

mRNA from alignment at P-canaliculata_contig983:12873..13226+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig983.23932.1 ID=mRNA_P-canaliculata_contig983.23932.1|Name=mRNA_P-canaliculata_contig983.23932.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=354bp|location=Sequence derived from alignment at P-canaliculata_contig983:12873..13226+ (Pelvetia canaliculata dioecious)
CGGATCCTCAATTCAATGGTCGGTGTTGACGGGGACTGTTCAGTTTCCAA
GACGGCCAACAAGATATACATCAACCAACGCCATGCTTCGCCACCGCTCT
CTCGTTCCTCTGTTCGACCACTCTCCTCGCCGCACGCAACTGGTGCGAGC
GCTCTCCCGGCACGCCCATCAACAGCGTGTCCAGCCCCCCCCCATTCAGT
CGCTGCGGAAAAAGACTGTCGCGTCTTCACCTCCACCACCCGGCAACGCA
GCCGACCATGCTCATGCCACGCCACAGTACCAATCTCCCACAAATCCCGA
CGAACTGATCCCTGTGACGGAGGGATATATGAAATACCTTCTCCTCTACA
TCGG
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig983:12873..13226+

>mRNA_P-canaliculata_contig983.23932.1 ID=mRNA_P-canaliculata_contig983.23932.1|Name=mRNA_P-canaliculata_contig983.23932.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at P-canaliculata_contig983:12873..13226+ (Pelvetia canaliculata dioecious)
ATGGTCGGTGTTGACGGGGACTGTTCAGTTTCCAAGACGGCCAACAAGAT
ATACATCAACCAACGCCATGCTTCGCCACCGCTCTCTCGTTCCTCTGTTC
GACCACTCTCCTCGCCGCACGCAACTGGTGCGAGCGCTCTCCCGGCACGC
CCATCAACAGCGTGTCCAGCCCCCCCCCATTCAGTCGCTGCGGAAAAAGA
CTGTCGCGTCTTCACCTCCACCACCCGGCAACGCAGCCGACCATGCTCAT
GCCACGCCACAGTACCAATCTCCCACAAATCCCGACGAACTGATCCCTGT
GACGGAGGGATATATGAAATACCTTCTCCTCTACATCGGATGGTCGGTGT
TGACGGGGACTGTTCAGTTTCCAAGACGGCCAACAAGATATACATCAACC
AACGCCATGCTTCGCCACCGCTCTCTCGTTCCTCTGTTCGACCACTCTCC
TCGCCGCACGCAACTGGTGCGAGCGCTCTCCCGGCACGCCCATCAACAGC
GTGTCCAGCCCCCCCCCATTCAGTCGCTGCGGAAAAAGACTGTCGCGTCT
TCACCTCCACCACCCGGCAACGCAGCCGACCATGCTCATGCCACGCCACA
GTACCAATCTCCCACAAATCCCGACGAACTGATCCCTGTGACGGAGGGAT
ATATGAAATACCTTCTCCTCTACATCGG
back to top