mRNA_P-canaliculata_contig983.23929.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig983.23929.1
Unique NamemRNA_P-canaliculata_contig983.23929.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig983.23929.1 vs. uniprot
Match: A0A6J3MHY1_9PEZI (uncharacterized protein n=2 Tax=Dothideomycetidae TaxID=451867 RepID=A0A6J3MHY1_9PEZI)

HSP 1 Score: 113 bits (283), Expect = 9.190e-30
Identity = 59/68 (86.76%), Postives = 64/68 (94.12%), Query Frame = 1 
Query:   79 MPSGQGAGTNPIHNKKAKKKTVEEDEEVKAFKAKQAADKKARDDMAKKAGGKGPLNSGAQGIKKSGKK 282
            MPSGQGAGTNPIHNKK KKK VEEDEE KAFKAKQAADKKAR+++AKKAGGKGP+N+G QGIKKSGKK
Sbjct:    1 MPSGQGAGTNPIHNKKPKKKVVEEDEEDKAFKAKQAADKKAREELAKKAGGKGPMNTGQQGIKKSGKK 68
[Close]
BLAST of mRNA_P-canaliculata_contig983.23929.1 vs. uniprot
Match: A0A150VI70_9PEZI (Uncharacterized protein n=6 Tax=Teratosphaeriaceae TaxID=668547 RepID=A0A150VI70_9PEZI)

HSP 1 Score: 113 bits (282), Expect = 1.300e-29
Identity = 59/68 (86.76%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:   79 MPSGQGAGTNPIHNKKAKKKTVEEDEEVKAFKAKQAADKKARDDMAKKAGGKGPLNSGAQGIKKSGKK 282
            MPSGQG GTNPIHNKK KKK  EEDEE KAFKAKQAADKKAR++MAKKAGGKGPLN+G+QGIKKSGKK
Sbjct:    1 MPSGQGTGTNPIHNKKPKKKVTEEDEEDKAFKAKQAADKKAREEMAKKAGGKGPLNTGSQGIKKSGKK 68
[Close]
BLAST of mRNA_P-canaliculata_contig983.23929.1 vs. uniprot
Match: A0A139GZE4_9PEZI (Uncharacterized protein n=3 Tax=Mycosphaerellales TaxID=2726947 RepID=A0A139GZE4_9PEZI)

HSP 1 Score: 112 bits (279), Expect = 3.700e-29
Identity = 58/68 (85.29%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:   79 MPSGQGAGTNPIHNKKAKKKTVEEDEEVKAFKAKQAADKKARDDMAKKAGGKGPLNSGAQGIKKSGKK 282
            MPSGQG GTNPIHNKK KKK  EEDE+ KAFKAKQAADKKAR++MAKKAGGKGPLN+G+QGIKKSGKK
Sbjct:    1 MPSGQGTGTNPIHNKKPKKKVTEEDEDDKAFKAKQAADKKAREEMAKKAGGKGPLNTGSQGIKKSGKK 68
[Close]
BLAST of mRNA_P-canaliculata_contig983.23929.1 vs. uniprot
Match: A0A6G1HRL1_9PEZI (Uncharacterized protein n=1 Tax=Trichodelitschia bisporula TaxID=703511 RepID=A0A6G1HRL1_9PEZI)

HSP 1 Score: 103 bits (258), Expect = 5.460e-26
Identity = 55/68 (80.88%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:   79 MPSGQGAGTNPIHNKKAKKKTVEEDEEVKAFKAKQAADKKARDDMAKKAGGKGPLNSGAQGIKKSGKK 282
            MPSGQGAGTNPIHNKK KKK VEEDE+ K +KAKQAADKKAR++MAK AG KGPL++G QGIKKSGKK
Sbjct:    1 MPSGQGAGTNPIHNKKPKKKAVEEDEDDKTYKAKQAADKKAREEMAKMAGKKGPLSAGNQGIKKSGKK 68
[Close]
BLAST of mRNA_P-canaliculata_contig983.23929.1 vs. uniprot
Match: M2MNA5_BAUPA (Uncharacterized protein n=1 Tax=Baudoinia panamericana (strain UAMH 10762) TaxID=717646 RepID=M2MNA5_BAUPA)

HSP 1 Score: 103 bits (258), Expect = 5.610e-26
Identity = 57/69 (82.61%), Postives = 62/69 (89.86%), Query Frame = 1 
Query:   79 MPSGQGAGTNPIHNKKAKKKTVEEDEEVKAFKAKQAADKKARDDMAKKAGG-KGPLNSGAQGIKKSGKK 282
            MPSGQGAGTNPIHNKK KK T EEDE+ KA+KAKQAADKKARD++AKKA G KGPLN+G QGIKKSGKK
Sbjct:    1 MPSGQGAGTNPIHNKKPKKATKEEDEDDKAYKAKQAADKKARDELAKKAAGSKGPLNTGQQGIKKSGKK 69
[Close]
BLAST of mRNA_P-canaliculata_contig983.23929.1 vs. uniprot
Match: A0A6A6IYP9_9PLEO (Translation machinery associated TMA7 n=1 Tax=Trematosphaeria pertusa TaxID=390896 RepID=A0A6A6IYP9_9PLEO)

HSP 1 Score: 102 bits (255), Expect = 1.590e-25
Identity = 54/68 (79.41%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:   79 MPSGQGAGTNPIHNKKAKKKTVEEDEEVKAFKAKQAADKKARDDMAKKAGGKGPLNSGAQGIKKSGKK 282
            MPSGQGAGTNPIHNKK KK+  EEDE+  AFK KQ ADKKAR++MAKKAGGKGP+N+G QGIKKSGKK
Sbjct:    1 MPSGQGAGTNPIHNKKPKKQNKEEDEDDIAFKQKQQADKKAREEMAKKAGGKGPMNTGQQGIKKSGKK 68
[Close]
BLAST of mRNA_P-canaliculata_contig983.23929.1 vs. uniprot
Match: A0A0F4G548_9PEZI (Translation machinery associated TMA7 like protein n=7 Tax=Eukaryota TaxID=2759 RepID=A0A0F4G548_9PEZI)

HSP 1 Score: 102 bits (253), Expect = 3.180e-25
Identity = 56/69 (81.16%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:   79 MPSGQGAGTNPIHNKKAKKKTV-EEDEEVKAFKAKQAADKKARDDMAKKAGGKGPLNSGAQGIKKSGKK 282
            MPSGQGAGTNPIHNKK KK    EEDEE KAFK KQAADKKAR+++AKKAGGKGP+N+G QGIKKSGKK
Sbjct:    1 MPSGQGAGTNPIHNKKPKKAAKGEEDEEDKAFKLKQAADKKAREELAKKAGGKGPMNTGNQGIKKSGKK 69
[Close]
BLAST of mRNA_P-canaliculata_contig983.23929.1 vs. uniprot
Match: A0A074Y339_AURPU (Translation machinery associated TMA7 n=3 Tax=Aureobasidium pullulans TaxID=5580 RepID=A0A074Y339_AURPU)

HSP 1 Score: 101 bits (252), Expect = 4.380e-25
Identity = 54/68 (79.41%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:   79 MPSGQGAGTNPIHNKKAKKKTVEEDEEVKAFKAKQAADKKARDDMAKKAGGKGPLNSGAQGIKKSGKK 282
            MPSGQG GT PIHNKK KK   +EDE+  AFKAKQAADKKAR++MAKKAGGKGPLN+G QGIKKSGKK
Sbjct:    1 MPSGQGNGTKPIHNKKPKKAVKDEDEDDVAFKAKQAADKKAREEMAKKAGGKGPLNTGGQGIKKSGKK 68
[Close]
BLAST of mRNA_P-canaliculata_contig983.23929.1 vs. uniprot
Match: R7YSK4_CONA1 (Uncharacterized protein n=2 Tax=Dothideomycetes incertae sedis TaxID=159987 RepID=R7YSK4_CONA1)

HSP 1 Score: 101 bits (252), Expect = 4.500e-25
Identity = 57/69 (82.61%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:   79 MPSGQGAGTNPIHNKKAKKKTV-EEDEEVKAFKAKQAADKKARDDMAKKAGGKGPLNSGAQGIKKSGKK 282
            MPSGQG GTNPIHNKK KKK   EEDEE KAFKAKQ ADKKARD+MA KA GKGPLN+G QGIKKSGKK
Sbjct:    1 MPSGQGTGTNPIHNKKPKKKPAGEEDEEDKAFKAKQQADKKARDEMAAKAKGKGPLNAGQQGIKKSGKK 69
[Close]
BLAST of mRNA_P-canaliculata_contig983.23929.1 vs. uniprot
Match: A0A6G1JMD4_9PLEO (Translation machinery associated TMA7 n=1 Tax=Lentithecium fluviatile CBS 122367 TaxID=1168545 RepID=A0A6G1JMD4_9PLEO)

HSP 1 Score: 101 bits (251), Expect = 6.370e-25
Identity = 54/68 (79.41%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:   79 MPSGQGAGTNPIHNKKAKKKTVEEDEEVKAFKAKQAADKKARDDMAKKAGGKGPLNSGAQGIKKSGKK 282
            MPSGQGAGTNPIHNKK KK+  E DEE  AFKAKQ ADKKAR+++AKKAGGKGP+N+G QGIKKSGKK
Sbjct:    1 MPSGQGAGTNPIHNKKPKKQEKELDEEDLAFKAKQQADKKAREELAKKAGGKGPMNTGNQGIKKSGKK 68
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig983.23929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6J3MHY1_9PEZI9.190e-3086.76uncharacterized protein n=2 Tax=Dothideomycetidae ... [more]
A0A150VI70_9PEZI1.300e-2986.76Uncharacterized protein n=6 Tax=Teratosphaeriaceae... [more]
A0A139GZE4_9PEZI3.700e-2985.29Uncharacterized protein n=3 Tax=Mycosphaerellales ... [more]
A0A6G1HRL1_9PEZI5.460e-2680.88Uncharacterized protein n=1 Tax=Trichodelitschia b... [more]
M2MNA5_BAUPA5.610e-2682.61Uncharacterized protein n=1 Tax=Baudoinia panameri... [more]
A0A6A6IYP9_9PLEO1.590e-2579.41Translation machinery associated TMA7 n=1 Tax=Trem... [more]
A0A0F4G548_9PEZI3.180e-2581.16Translation machinery associated TMA7 like protein... [more]
A0A074Y339_AURPU4.380e-2579.41Translation machinery associated TMA7 n=3 Tax=Aure... [more]
R7YSK4_CONA14.500e-2582.61Uncharacterized protein n=2 Tax=Dothideomycetes in... [more]
A0A6G1JMD4_9PLEO6.370e-2579.41Translation machinery associated TMA7 n=1 Tax=Lent... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig983contigP-canaliculata_contig983:5852..6484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score104.0
Seed ortholog evalue2.9e-20
Seed eggNOG ortholog430998.XP_007680195.1
EggNOG free text desc.Translation machinery associated TMA7
EggNOG OGs2030F@147541,2CZVG@1,2SBUJ@2759,3AAFZ@33154,3MMTA@451867,3P7GY@4751,3QZRV@4890
COG Functional cat.S
Best tax levelDothideomycetidae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size570
Cds size207
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig983.23929.1prot_P-canaliculata_contig983.23929.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig983 5930..6199 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817344.4290383-UTR-P-canaliculata_contig983:5851..59291622817344.4290383-UTR-P-canaliculata_contig983:5851..5929Pelvetia canaliculata dioeciousUTRP-canaliculata_contig983 5852..5929 +
1693495236.3252418-UTR-P-canaliculata_contig983:5851..59291693495236.3252418-UTR-P-canaliculata_contig983:5851..5929Pelvetia canaliculata dioeciousUTRP-canaliculata_contig983 5852..5929 +
1622817344.4751256-UTR-P-canaliculata_contig983:6199..64841622817344.4751256-UTR-P-canaliculata_contig983:6199..6484Pelvetia canaliculata dioeciousUTRP-canaliculata_contig983 6200..6484 +
1693495236.3598156-UTR-P-canaliculata_contig983:6199..64841693495236.3598156-UTR-P-canaliculata_contig983:6199..6484Pelvetia canaliculata dioeciousUTRP-canaliculata_contig983 6200..6484 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817344.442439-CDS-P-canaliculata_contig983:5929..60411622817344.442439-CDS-P-canaliculata_contig983:5929..6041Pelvetia canaliculata dioeciousCDSP-canaliculata_contig983 5930..6041 +
1693495236.340029-CDS-P-canaliculata_contig983:5929..60411693495236.340029-CDS-P-canaliculata_contig983:5929..6041Pelvetia canaliculata dioeciousCDSP-canaliculata_contig983 5930..6041 +
1622817344.4577234-CDS-P-canaliculata_contig983:6104..61991622817344.4577234-CDS-P-canaliculata_contig983:6104..6199Pelvetia canaliculata dioeciousCDSP-canaliculata_contig983 6105..6199 +
1693495236.3498313-CDS-P-canaliculata_contig983:6104..61991693495236.3498313-CDS-P-canaliculata_contig983:6104..6199Pelvetia canaliculata dioeciousCDSP-canaliculata_contig983 6105..6199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig983.23929.1

>prot_P-canaliculata_contig983.23929.1 ID=prot_P-canaliculata_contig983.23929.1|Name=mRNA_P-canaliculata_contig983.23929.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=69bp
MPSGQGAGTNPIHNKKAKKKTVEEDEEVKAFKAKQAADKKARDDMAKKAG
GKGPLNSGAQGIKKSGKK*
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mRNA from alignment at P-canaliculata_contig983:5852..6484+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig983.23929.1 ID=mRNA_P-canaliculata_contig983.23929.1|Name=mRNA_P-canaliculata_contig983.23929.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=633bp|location=Sequence derived from alignment at P-canaliculata_contig983:5852..6484+ (Pelvetia canaliculata dioecious)
TAAATCCACGCCATAGAAGCCAGCGACTGCTACAACAACTTTGACGCGTT
CAGAGTACGGCCGAAGGAAATCATCAACATGCCTTCCGGGCAAGGCGCTG
GGACCAATCCGATCCACAACAAGAAGGCAAAGAAAAAGACTGTGGAGGAG
GACGAGGAGGTCAAGGCCTTCAAAGCGAAGCAGGCTGCGGGTGAGACCCG
TCAATCGGCATGCTTGGGTTGTTCGTGAGCTCTAACAGAGTCTTATTCCT
CAGACAAGAAGGCTCGTGATGATATGGCGAAGAAAGCTGGCGGAAAAGGC
CCTCTGAACAGCGGCGCTCAGGGCATCAAGAAGAGTGGCAAGAAATGAGC
CACTGCACCACTCACGGCGAGGCTCTAATACAGACCTGCAAATAACGCGG
GGGGCGAGAAAAGCGCTTGCAGGGAACTTGTGCTGCGACTCAAACGACAG
CTGCTAGTGTCCGTGGCACGGGAAGACCGACTGCCTTCGCAATGTGCAGC
TCGCTGGATTGTTTTGAGACGCCACGAACACGCTTTTCCCAGCCGTGGAT
GTGCGAGCGAGAAGGCAGCCTATTTGTCTGTTGCGGTTGCAGCTCTAGAC
GAGTGATAAAGACATGGCACTTCAAATCCATTC
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Coding sequence (CDS) from alignment at P-canaliculata_contig983:5852..6484+

>mRNA_P-canaliculata_contig983.23929.1 ID=mRNA_P-canaliculata_contig983.23929.1|Name=mRNA_P-canaliculata_contig983.23929.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at P-canaliculata_contig983:5852..6484+ (Pelvetia canaliculata dioecious)
ATGCCTTCCGGGCAAGGCGCTGGGACCAATCCGATCCACAACAAGAAGGC
AAAGAAAAAGACTGTGGAGGAGGACGAGGAGGTCAAGGCCTTCAAAGCGA
AGCAGGCTGCGGATGCCTTCCGGGCAAGGCGCTGGGACCAATCCGATCCA
CAACAAGAAGGCAAAGAAAAAGACTGTGGAGGAGGACGAGGAGGTCAAGG
CCTTCAAAGCGAAGCAGGCTGCGGACAAGAAGGCTCGTGATGATATGGCG
AAGAAAGCTGGCGGAAAAGGCCCTCTGAACAGCGGCGCTCAGGGCATCAA
GAAGAGTGGCAAGAAATGAACAAGAAGGCTCGTGATGATATGGCGAAGAA
AGCTGGCGGAAAAGGCCCTCTGAACAGCGGCGCTCAGGGCATCAAGAAGA
GTGGCAAGAAATGA
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