mRNA_P-canaliculata_contig98178.23917.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig98178.23917.1
Unique NamemRNA_P-canaliculata_contig98178.23917.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig98178.23917.1 vs. uniprot
Match: S0A401_9CAUD (Structural protein n=1 Tax=Cellulophaga phage phi14:2 TaxID=1327990 RepID=S0A401_9CAUD)

HSP 1 Score: 70.1 bits (170), Expect = 1.300e-9
Identity = 93/294 (31.63%), Postives = 126/294 (42.86%), Query Frame = 1 
Query:  253 MDTKEELLDRLAKAQEFTKMKAGLHSNSQEVPDMMDGEIPEGMGEFAEGGPIDVSGIASTGLGFVNDLTQNYDNVEGLEDMAKT-----DKVKSSGLSALKGASAGLALGPIGA---VAGGLIGGASGLLAANKKNNAIEEAKQNDVLKSANYYNNDFKFGGSILEDLTPRTPDAT-----------FAPITK--LNPKKPTNFQRGVANVKDALGTAGSFAKENYGSALSYAPILGNALQASKLKPNNTDRGTRLDNTYTPRLFDRESLYNKINN--NNVNSALTESSGGDLG 1065
            M+TKEELL RLA AQEF K ++ +  N      M  GE   GMG+         S IA  G+   N       N  G   +  +     DK K   L A K     L  G IGA   + G +IG         K N  I +A  N+ LK  + Y+++F  GG  ++D+   T +A+           F PI+K       P   Q G+    + L        ENYG AL YAP   NA Q S+L+    +   RL N Y   L D  +L N +    +N  +A+T +S G  G
Sbjct:    1 METKEELLTRLANAQEFLKAQSAVGENDINQA-MFGGEQGIGMGDPN-------SMIAQQGMNLANGALDGAINAFGKTGIDTSGSQVYDKQKVDWLGAGKN----LLSGDIGAGFKLVGDIIG-------TGKANKDIAQANTNNALKVNSQYSSNFA-GGGFMDDIFKVTDEASDKLNDVGQTDIFNPISKPTYGGATPDVEQSGLDKRWNWLKEG---VNENYGDALRYAPAAMNAYQLSQLEKPEFESLDRLGNRYEKDLVDESALRNSVQQEADNTRNAVTNASAGSAG 271
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98178.23917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
S0A401_9CAUD1.300e-931.63Structural protein n=1 Tax=Cellulophaga phage phi1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98178contigP-canaliculata_contig98178:1..1065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1065
Cds size1065
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817343.5664499-CDS-P-canaliculata_contig98178:0..10651622817343.5664499-CDS-P-canaliculata_contig98178:0..1065Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98178 1..1065 -
1693495235.7855468-CDS-P-canaliculata_contig98178:0..10651693495235.7855468-CDS-P-canaliculata_contig98178:0..1065Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98178 1..1065 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98178.23917.1prot_P-canaliculata_contig98178.23917.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig98178 1..1065 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig98178.23917.1

>prot_P-canaliculata_contig98178.23917.1 ID=prot_P-canaliculata_contig98178.23917.1|Name=mRNA_P-canaliculata_contig98178.23917.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=355bp
FNSFDAGGLHENNPFGGIPQGNGNTVEEGETSANIKGDKFIFSDRVDSNL
SKEFNLPSYVKNKSFSDASKSIEKKFKDREDKASMDTKEELLDRLAKAQE
FTKMKAGLHSNSQEVPDMMDGEIPEGMGEFAEGGPIDVSGIASTGLGFVN
DLTQNYDNVEGLEDMAKTDKVKSSGLSALKGASAGLALGPIGAVAGGLIG
GASGLLAANKKNNAIEEAKQNDVLKSANYYNNDFKFGGSILEDLTPRTPD
ATFAPITKLNPKKPTNFQRGVANVKDALGTAGSFAKENYGSALSYAPILG
NALQASKLKPNNTDRGTRLDNTYTPRLFDRESLYNKINNNNVNSALTESS
GGDLG
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mRNA from alignment at P-canaliculata_contig98178:1..1065-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig98178.23917.1 ID=mRNA_P-canaliculata_contig98178.23917.1|Name=mRNA_P-canaliculata_contig98178.23917.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1065bp|location=Sequence derived from alignment at P-canaliculata_contig98178:1..1065- (Pelvetia canaliculata dioecious)
TTCAATTCTTTTGATGCAGGTGGTTTACATGAAAATAATCCTTTTGGTGG
TATACCTCAAGGCAATGGTAATACTGTTGAAGAAGGTGAAACATCCGCTA
ATATTAAAGGAGATAAATTTATATTCTCAGATAGAGTAGATAGCAATTTG
TCTAAAGAATTTAATTTACCATCATATGTAAAGAATAAATCTTTTTCTGA
TGCAAGTAAATCTATAGAGAAGAAATTCAAAGATAGAGAAGATAAAGCTT
CAATGGATACCAAAGAAGAATTATTAGATAGACTTGCTAAAGCACAGGAG
TTTACTAAGATGAAAGCTGGTCTACATAGTAATTCACAAGAAGTGCCAGA
TATGATGGATGGTGAAATTCCTGAAGGTATGGGGGAATTTGCTGAAGGTG
GACCAATAGATGTAAGTGGAATAGCTAGTACAGGATTAGGTTTTGTAAAC
GATCTTACTCAAAACTATGACAATGTAGAAGGTTTAGAAGATATGGCTAA
GACAGATAAAGTTAAATCTAGCGGATTAAGCGCTCTTAAAGGTGCTAGTG
CAGGATTAGCATTGGGACCTATAGGAGCTGTGGCAGGAGGTTTAATAGGA
GGAGCAAGCGGATTGTTAGCAGCTAATAAAAAAAATAATGCTATAGAAGA
AGCTAAACAAAATGATGTATTAAAATCCGCTAATTATTATAATAACGATT
TTAAATTTGGTGGTTCAATTCTTGAAGATTTAACACCTCGTACACCAGAT
GCTACATTTGCACCTATAACAAAACTTAATCCTAAGAAACCTACTAATTT
TCAAAGAGGTGTTGCAAATGTAAAAGATGCTTTAGGTACAGCTGGTAGTT
TTGCTAAAGAGAATTATGGTAGTGCATTAAGTTATGCTCCTATATTAGGT
AATGCTTTACAAGCTTCTAAATTGAAACCTAATAATACTGATAGAGGTAC
AAGACTTGATAATACATACACTCCTAGATTATTCGATAGGGAAAGTTTAT
ATAATAAGATTAATAACAATAACGTTAATAGTGCTTTAACAGAATCTTCT
GGAGGAGATTTAGGC
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Coding sequence (CDS) from alignment at P-canaliculata_contig98178:1..1065-

>mRNA_P-canaliculata_contig98178.23917.1 ID=mRNA_P-canaliculata_contig98178.23917.1|Name=mRNA_P-canaliculata_contig98178.23917.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2130bp|location=Sequence derived from alignment at P-canaliculata_contig98178:1..1065- (Pelvetia canaliculata dioecious)
TTCAATTCTTTTGATGCAGGTGGTTTACATGAAAATAATCCTTTTGGTGG
TATACCTCAAGGCAATGGTAATACTGTTGAAGAAGGTGAAACATCCGCTA
ATATTAAAGGAGATAAATTTATATTCTCAGATAGAGTAGATAGCAATTTG
TCTAAAGAATTTAATTTACCATCATATGTAAAGAATAAATCTTTTTCTGA
TGCAAGTAAATCTATAGAGAAGAAATTCAAAGATAGAGAAGATAAAGCTT
CAATGGATACCAAAGAAGAATTATTAGATAGACTTGCTAAAGCACAGGAG
TTTACTAAGATGAAAGCTGGTCTACATAGTAATTCACAAGAAGTGCCAGA
TATGATGGATGGTGAAATTCCTGAAGGTATGGGGGAATTTGCTGAAGGTG
GACCAATAGATGTAAGTGGAATAGCTAGTACAGGATTAGGTTTTGTAAAC
GATCTTACTCAAAACTATGACAATGTAGAAGGTTTAGAAGATATGGCTAA
GACAGATAAAGTTAAATCTAGCGGATTAAGCGCTCTTAAAGGTGCTAGTG
CAGGATTAGCATTGGGACCTATAGGAGCTGTGGCAGGAGGTTTAATAGGA
GGAGCAAGCGGATTGTTAGCAGCTAATAAAAAAAATAATGCTATAGAAGA
AGCTAAACAAAATGATGTATTAAAATCCGCTAATTATTATAATAACGATT
TTAAATTTGGTGGTTCAATTCTTGAAGATTTAACACCTCGTACACCAGAT
GCTACATTTGCACCTATAACAAAACTTAATCCTAAGAAACCTACTAATTT
TCAAAGAGGTGTTGCAAATGTAAAAGATGCTTTAGGTACAGCTGGTAGTT
TTGCTAAAGAGAATTATGGTAGTGCATTAAGTTATGCTCCTATATTAGGT
AATGCTTTACAAGCTTCTAAATTGAAACCTAATAATACTGATAGAGGTAC
AAGACTTGATAATACATACACTCCTAGATTATTCGATAGGGAAAGTTTAT
ATAATAAGATTAATAACAATAACGTTAATAGTGCTTTAACAGAATCTTCT
GGAGGAGATTTAGGCTTCAATTCTTTTGATGCAGGTGGTTTACATGAAAA
TAATCCTTTTGGTGGTATACCTCAAGGCAATGGTAATACTGTTGAAGAAG
GTGAAACATCCGCTAATATTAAAGGAGATAAATTTATATTCTCAGATAGA
GTAGATAGCAATTTGTCTAAAGAATTTAATTTACCATCATATGTAAAGAA
TAAATCTTTTTCTGATGCAAGTAAATCTATAGAGAAGAAATTCAAAGATA
GAGAAGATAAAGCTTCAATGGATACCAAAGAAGAATTATTAGATAGACTT
GCTAAAGCACAGGAGTTTACTAAGATGAAAGCTGGTCTACATAGTAATTC
ACAAGAAGTGCCAGATATGATGGATGGTGAAATTCCTGAAGGTATGGGGG
AATTTGCTGAAGGTGGACCAATAGATGTAAGTGGAATAGCTAGTACAGGA
TTAGGTTTTGTAAACGATCTTACTCAAAACTATGACAATGTAGAAGGTTT
AGAAGATATGGCTAAGACAGATAAAGTTAAATCTAGCGGATTAAGCGCTC
TTAAAGGTGCTAGTGCAGGATTAGCATTGGGACCTATAGGAGCTGTGGCA
GGAGGTTTAATAGGAGGAGCAAGCGGATTGTTAGCAGCTAATAAAAAAAA
TAATGCTATAGAAGAAGCTAAACAAAATGATGTATTAAAATCCGCTAATT
ATTATAATAACGATTTTAAATTTGGTGGTTCAATTCTTGAAGATTTAACA
CCTCGTACACCAGATGCTACATTTGCACCTATAACAAAACTTAATCCTAA
GAAACCTACTAATTTTCAAAGAGGTGTTGCAAATGTAAAAGATGCTTTAG
GTACAGCTGGTAGTTTTGCTAAAGAGAATTATGGTAGTGCATTAAGTTAT
GCTCCTATATTAGGTAATGCTTTACAAGCTTCTAAATTGAAACCTAATAA
TACTGATAGAGGTACAAGACTTGATAATACATACACTCCTAGATTATTCG
ATAGGGAAAGTTTATATAATAAGATTAATAACAATAACGTTAATAGTGCT
TTAACAGAATCTTCTGGAGGAGATTTAGGC
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