mRNA_P-canaliculata_contig98151.23913.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig98151.23913.1
Unique NamemRNA_P-canaliculata_contig98151.23913.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig98151.23913.1 vs. uniprot
Match: A0A7W7ISD7_9CAUL (Tetratricopeptide (TPR) repeat protein n=1 Tax=Brevundimonas bullata TaxID=13160 RepID=A0A7W7ISD7_9CAUL)

HSP 1 Score: 267 bits (682), Expect = 1.330e-88
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1 
Query:    1 LAQLRQVLALDVDDRIGARYALATALLIAGRFEDFTALRTTQTEDTTAFWLYADAYHALAAKAPITDRKTRLARALASNAHAPLLFALDEQQLGEPADSFAPGGFEEARALACSLTGRLWRRDHVALQALLKASRPSQQK 420
            LAQLRQVLALDVDDRIGARYALATALLIAGRFEDFTALRTTQTEDTTAFWLYADAYHALAAKAPITDRKTRLARALASNAHAPLLFALDEQQLGEPADSFAPGGFEEARALACSLTGRLWRRDHVALQALLKASRPSQQK
Sbjct:  116 LAQLRQVLALDVDDRIGARYALATALLIAGRFEDFTALRTTQTEDTTAFWLYADAYHALAAKAPITDRKTRLARALASNAHAPLLFALDEQQLGEPADSFAPGGFEEARALACSLTGRLWRRDHVALQALLKASRPSQQK 255
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98151.23913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7W7ISD7_9CAUL1.330e-88100.00Tetratricopeptide (TPR) repeat protein n=1 Tax=Bre... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98151contigP-canaliculata_contig98151:1..423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size423
Cds size423
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817343.2837305-CDS-P-canaliculata_contig98151:0..4231622817343.2837305-CDS-P-canaliculata_contig98151:0..423Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98151 1..423 +
1693495235.6038852-CDS-P-canaliculata_contig98151:0..4231693495235.6038852-CDS-P-canaliculata_contig98151:0..423Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98151 1..423 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98151.23913.1prot_P-canaliculata_contig98151.23913.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig98151 1..423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig98151.23913.1

>prot_P-canaliculata_contig98151.23913.1 ID=prot_P-canaliculata_contig98151.23913.1|Name=mRNA_P-canaliculata_contig98151.23913.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=141bp
LAQLRQVLALDVDDRIGARYALATALLIAGRFEDFTALRTTQTEDTTAFW
LYADAYHALAAKAPITDRKTRLARALASNAHAPLLFALDEQQLGEPADSF
APGGFEEARALACSLTGRLWRRDHVALQALLKASRPSQQK*
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mRNA from alignment at P-canaliculata_contig98151:1..423+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig98151.23913.1 ID=mRNA_P-canaliculata_contig98151.23913.1|Name=mRNA_P-canaliculata_contig98151.23913.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=423bp|location=Sequence derived from alignment at P-canaliculata_contig98151:1..423+ (Pelvetia canaliculata dioecious)
TTAGCCCAGTTGCGCCAGGTGCTCGCACTCGATGTCGATGACCGGATCGG
CGCTCGATACGCCCTGGCGACCGCTCTTCTCATCGCCGGACGGTTCGAGG
ATTTCACCGCCCTGCGAACCACGCAGACTGAGGATACGACGGCCTTCTGG
CTCTATGCCGACGCCTACCACGCCTTGGCGGCCAAGGCTCCGATCACGGA
TCGCAAGACGCGCCTCGCACGCGCCCTTGCGAGCAATGCACATGCGCCGC
TGCTTTTCGCTCTCGACGAACAACAACTCGGCGAGCCCGCCGACAGCTTC
GCCCCGGGCGGCTTTGAGGAGGCCCGCGCCCTCGCCTGTTCGCTCACCGG
TCGCCTCTGGCGTCGCGACCACGTGGCGCTTCAAGCCCTCCTGAAGGCGA
GCCGCCCTTCCCAGCAGAAGTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig98151:1..423+

>mRNA_P-canaliculata_contig98151.23913.1 ID=mRNA_P-canaliculata_contig98151.23913.1|Name=mRNA_P-canaliculata_contig98151.23913.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at P-canaliculata_contig98151:1..423+ (Pelvetia canaliculata dioecious)
TTAGCCCAGTTGCGCCAGGTGCTCGCACTCGATGTCGATGACCGGATCGG
CGCTCGATACGCCCTGGCGACCGCTCTTCTCATCGCCGGACGGTTCGAGG
ATTTCACCGCCCTGCGAACCACGCAGACTGAGGATACGACGGCCTTCTGG
CTCTATGCCGACGCCTACCACGCCTTGGCGGCCAAGGCTCCGATCACGGA
TCGCAAGACGCGCCTCGCACGCGCCCTTGCGAGCAATGCACATGCGCCGC
TGCTTTTCGCTCTCGACGAACAACAACTCGGCGAGCCCGCCGACAGCTTC
GCCCCGGGCGGCTTTGAGGAGGCCCGCGCCCTCGCCTGTTCGCTCACCGG
TCGCCTCTGGCGTCGCGACCACGTGGCGCTTCAAGCCCTCCTGAAGGCGA
GCCGCCCTTCCCAGCAGAAGTGATTAGCCCAGTTGCGCCAGGTGCTCGCA
CTCGATGTCGATGACCGGATCGGCGCTCGATACGCCCTGGCGACCGCTCT
TCTCATCGCCGGACGGTTCGAGGATTTCACCGCCCTGCGAACCACGCAGA
CTGAGGATACGACGGCCTTCTGGCTCTATGCCGACGCCTACCACGCCTTG
GCGGCCAAGGCTCCGATCACGGATCGCAAGACGCGCCTCGCACGCGCCCT
TGCGAGCAATGCACATGCGCCGCTGCTTTTCGCTCTCGACGAACAACAAC
TCGGCGAGCCCGCCGACAGCTTCGCCCCGGGCGGCTTTGAGGAGGCCCGC
GCCCTCGCCTGTTCGCTCACCGGTCGCCTCTGGCGTCGCGACCACGTGGC
GCTTCAAGCCCTCCTGAAGGCGAGCCGCCCTTCCCAGCAGAAGTGA
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