Homology
BLAST of mRNA_P-canaliculata_contig98128.23912.1 vs. uniprot
Match:
UPI0007EC79E1 (hypothetical protein n=2 Tax=Tenacibaculum ovolyticum TaxID=104270 RepID=UPI0007EC79E1)
HSP 1 Score: 58.2 bits (139), Expect = 9.170e-7
Identity = 51/173 (29.48%), Postives = 81/173 (46.82%), Query Frame = 1
Query: 40 WHYSDFLVEKYKSPVHELVKEEKER--RRYKVDNKGSILFVKGVKK---DYDILINDKGKEFKVYDLNVLENIINKDFLIKYYIDSETKDIGSEKIKIQYFELFKLSFQER---KKLYEFIAESVSVEISFSNWDVNKTFISTTHQDNQDNSISYLKRIYKIKNLNHHVHSHP 534
WH + E YKSPV K+EK + R+Y+++ G I +G K DYDIL+N KG+E ++YD N+L + +TK + S K+ + K+S + + K++ F ++ S E F NK + T D +NS + + +HSHP
Sbjct: 132 WHITSIEEEGYKSPVQAAEKKEKNKNLRKYQINQTGHITLCEGKIKNVGDYDILMNLKGEEIRIYDTNILPQL------------EKTKIVESYKVS-----MVKVSVKSKYDLAKVFLFSVDNSSPEWRFIRTTKNKYILGTHFSD--ENSPGNSELGITSSKIFSDIHSHP 285
BLAST of mRNA_P-canaliculata_contig98128.23912.1 vs. uniprot
Match:
UPI00095098F8 (hypothetical protein n=1 Tax=Cellulophaga lytica TaxID=979 RepID=UPI00095098F8)
HSP 1 Score: 55.5 bits (132), Expect = 8.170e-6
Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 1
Query: 4 QRINKTALNVYRWHYSDFLVEKYKSPVHELVKEEKERRRYK----VDNKGSILFVKGVKKDYDILINDKGKEFKVYDLNVLENIINK 252
QRINK LNV+RWHYSD+ +E+Y+SPV+ +V+E KE+ K N+G + G Y L+ + D ++L++ I K
Sbjct: 135 QRINKKVLNVFRWHYSDYDLEEYQSPVNTVVEETKEKLHLKDGFYFSNQGEFIGRMGNNHKYSNLVFVFSDNLTISDKSLLKSEIKK 221
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98128.23912.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 9.17e-7 / Id = 29.48 Expect = 8.17e-6 / Id = 37.93 Sequence UPI0007EC79E1 UPI00095098F8
Match Name E-value Identity Description
UPI0007EC79E1 9.170e-7 29.48 hypothetical protein n=2 Tax=Tenacibaculum ovolyti... [more] UPI00095098F8 8.170e-6 37.93 hypothetical protein n=1 Tax=Cellulophaga lytica T... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 1 Model size 537 Cds size 537 Stop 0 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622817343.2521915-CDS-P-canaliculata_contig98128:15..552 1622817343.2521915-CDS-P-canaliculata_contig98128:15..552 Pelvetia canaliculata dioecious CDS P-canaliculata_contig98128 16..552 + 1693495235.5849116-CDS-P-canaliculata_contig98128:15..552 1693495235.5849116-CDS-P-canaliculata_contig98128:15..552 Pelvetia canaliculata dioecious CDS P-canaliculata_contig98128 16..552 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig98128.23912.1
>prot_P-canaliculata_contig98128.23912.1 ID=prot_P-canaliculata_contig98128.23912.1|Name=mRNA_P-canaliculata_contig98128.23912.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=179bp
FQRINKTALNVYRWHYSDFLVEKYKSPVHELVKEEKERRRYKVDNKGSIL back to top mRNA from alignment at P-canaliculata_contig98128:16..552+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig98128.23912.1 ID=mRNA_P-canaliculata_contig98128.23912.1|Name=mRNA_P-canaliculata_contig98128.23912.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=537bp|location=Sequence derived from alignment at P-canaliculata_contig98128:16..552+ (Pelvetia canaliculata dioecious)TTTCAACGCATTAACAAAACCGCTTTAAATGTTTATAGATGGCATTATTC
AGATTTTCTTGTTGAAAAATATAAATCACCTGTGCATGAATTGGTAAAGG
AAGAGAAAGAAAGGAGACGTTATAAAGTTGACAACAAAGGCTCTATTTTA
TTTGTTAAAGGAGTAAAAAAAGATTACGATATTCTTATTAATGATAAAGG
AAAAGAATTTAAAGTTTACGATTTAAATGTTCTTGAAAATATAATAAATA
AAGATTTTTTAATTAAATATTATATTGATTCTGAAACTAAAGATATTGGT
TCTGAGAAAATTAAAATTCAATACTTTGAACTTTTTAAACTTTCATTTCA
AGAAAGGAAGAAACTTTATGAATTTATTGCGGAAAGTGTGTCCGTTGAAA
TTTCATTTTCCAATTGGGATGTAAATAAAACATTTATCAGCACAACACAT
CAAGATAATCAAGACAATAGCATTAGTTATTTAAAACGTATTTATAAAAT
TAAAAATTTAAATCACCATGTACATTCACATCCTAAA back to top Coding sequence (CDS) from alignment at P-canaliculata_contig98128:16..552+
>mRNA_P-canaliculata_contig98128.23912.1 ID=mRNA_P-canaliculata_contig98128.23912.1|Name=mRNA_P-canaliculata_contig98128.23912.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at P-canaliculata_contig98128:16..552+ (Pelvetia canaliculata dioecious) back to top