mRNA_P-canaliculata_contig98128.23912.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig98128.23912.1 vs. uniprot
Match: UPI0007EC79E1 (hypothetical protein n=2 Tax=Tenacibaculum ovolyticum TaxID=104270 RepID=UPI0007EC79E1) HSP 1 Score: 58.2 bits (139), Expect = 9.170e-7 Identity = 51/173 (29.48%), Postives = 81/173 (46.82%), Query Frame = 1 Query: 40 WHYSDFLVEKYKSPVHELVKEEKER--RRYKVDNKGSILFVKGVKK---DYDILINDKGKEFKVYDLNVLENIINKDFLIKYYIDSETKDIGSEKIKIQYFELFKLSFQER---KKLYEFIAESVSVEISFSNWDVNKTFISTTHQDNQDNSISYLKRIYKIKNLNHHVHSHP 534
WH + E YKSPV K+EK + R+Y+++ G I +G K DYDIL+N KG+E ++YD N+L + +TK + S K+ + K+S + + K++ F ++ S E F NK + T D +NS + + +HSHP
Sbjct: 132 WHITSIEEEGYKSPVQAAEKKEKNKNLRKYQINQTGHITLCEGKIKNVGDYDILMNLKGEEIRIYDTNILPQL------------EKTKIVESYKVS-----MVKVSVKSKYDLAKVFLFSVDNSSPEWRFIRTTKNKYILGTHFSD--ENSPGNSELGITSSKIFSDIHSHP 285
BLAST of mRNA_P-canaliculata_contig98128.23912.1 vs. uniprot
Match: UPI00095098F8 (hypothetical protein n=1 Tax=Cellulophaga lytica TaxID=979 RepID=UPI00095098F8) HSP 1 Score: 55.5 bits (132), Expect = 8.170e-6 Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 1 Query: 4 QRINKTALNVYRWHYSDFLVEKYKSPVHELVKEEKERRRYK----VDNKGSILFVKGVKKDYDILINDKGKEFKVYDLNVLENIINK 252
QRINK LNV+RWHYSD+ +E+Y+SPV+ +V+E KE+ K N+G + G Y L+ + D ++L++ I K
Sbjct: 135 QRINKKVLNVFRWHYSDYDLEEYQSPVNTVVEETKEKLHLKDGFYFSNQGEFIGRMGNNHKYSNLVFVFSDNLTISDKSLLKSEIKK 221 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98128.23912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig98128.23912.1 >prot_P-canaliculata_contig98128.23912.1 ID=prot_P-canaliculata_contig98128.23912.1|Name=mRNA_P-canaliculata_contig98128.23912.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=179bp FQRINKTALNVYRWHYSDFLVEKYKSPVHELVKEEKERRRYKVDNKGSILback to top mRNA from alignment at P-canaliculata_contig98128:16..552+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig98128.23912.1 ID=mRNA_P-canaliculata_contig98128.23912.1|Name=mRNA_P-canaliculata_contig98128.23912.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=537bp|location=Sequence derived from alignment at P-canaliculata_contig98128:16..552+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig98128:16..552+ >mRNA_P-canaliculata_contig98128.23912.1 ID=mRNA_P-canaliculata_contig98128.23912.1|Name=mRNA_P-canaliculata_contig98128.23912.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at P-canaliculata_contig98128:16..552+ (Pelvetia canaliculata dioecious)back to top |