mRNA_P-canaliculata_contig98085.23906.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig98085.23906.1
Unique NamemRNA_P-canaliculata_contig98085.23906.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98085.23906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98085contigP-canaliculata_contig98085:222..827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size606
Cds size606
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817342.8968546-CDS-P-canaliculata_contig98085:221..8271622817342.8968546-CDS-P-canaliculata_contig98085:221..827Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98085 222..827 -
1693495235.3435712-CDS-P-canaliculata_contig98085:221..8271693495235.3435712-CDS-P-canaliculata_contig98085:221..827Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98085 222..827 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98085.23906.1prot_P-canaliculata_contig98085.23906.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig98085 222..827 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig98085.23906.1

>prot_P-canaliculata_contig98085.23906.1 ID=prot_P-canaliculata_contig98085.23906.1|Name=mRNA_P-canaliculata_contig98085.23906.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=202bp
LDWWKLIAENIPLVIAGIAALLSGKVYFDQLEYDRKSLTRFSIPMADTNL
SIFTVGDGIENVWGTPQNICMISGKYSVKNIGDFPWEMTRSSIEIHKLPP
VNNNDVPDSTDGKFYSRSVSNFLGKETLLHTEPFETSEKVGPEGIYERLF
EVHFRVPDEHLDPNQLPYNFVVVANGTGGRLEQDGTVSQKIANIFGKNEL
KH
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mRNA from alignment at P-canaliculata_contig98085:222..827-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig98085.23906.1 ID=mRNA_P-canaliculata_contig98085.23906.1|Name=mRNA_P-canaliculata_contig98085.23906.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=606bp|location=Sequence derived from alignment at P-canaliculata_contig98085:222..827- (Pelvetia canaliculata dioecious)
CTTGATTGGTGGAAGTTGATTGCTGAGAATATCCCGTTAGTTATCGCAGG
GATTGCTGCGTTACTTAGTGGCAAAGTCTATTTTGATCAGTTGGAATATG
ATCGAAAGAGTTTGACCCGCTTTTCAATTCCGATGGCTGATACAAACTTG
TCCATCTTTACCGTTGGGGATGGGATAGAGAACGTCTGGGGCACGCCTCA
AAACATCTGCATGATCAGCGGTAAATATTCCGTCAAAAATATTGGAGACT
TTCCTTGGGAAATGACTCGGTCATCAATCGAAATCCATAAATTGCCTCCA
GTCAACAACAATGATGTTCCTGATTCCACTGACGGTAAATTCTATTCTCG
ATCAGTCTCAAATTTTCTGGGCAAAGAGACGTTGCTGCATACTGAACCAT
TTGAGACTTCCGAAAAGGTTGGTCCAGAGGGAATATATGAGAGACTGTTT
GAAGTTCATTTTAGAGTCCCTGATGAACATCTTGATCCAAACCAGTTGCC
GTATAATTTTGTAGTGGTCGCCAACGGAACAGGGGGGCGCCTAGAGCAAG
ACGGTACCGTTTCTCAAAAAATTGCCAATATATTCGGCAAAAATGAGCTT
AAACAC
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Coding sequence (CDS) from alignment at P-canaliculata_contig98085:222..827-

>mRNA_P-canaliculata_contig98085.23906.1 ID=mRNA_P-canaliculata_contig98085.23906.1|Name=mRNA_P-canaliculata_contig98085.23906.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1212bp|location=Sequence derived from alignment at P-canaliculata_contig98085:222..827- (Pelvetia canaliculata dioecious)
CTTGATTGGTGGAAGTTGATTGCTGAGAATATCCCGTTAGTTATCGCAGG
GATTGCTGCGTTACTTAGTGGCAAAGTCTATTTTGATCAGTTGGAATATG
ATCGAAAGAGTTTGACCCGCTTTTCAATTCCGATGGCTGATACAAACTTG
TCCATCTTTACCGTTGGGGATGGGATAGAGAACGTCTGGGGCACGCCTCA
AAACATCTGCATGATCAGCGGTAAATATTCCGTCAAAAATATTGGAGACT
TTCCTTGGGAAATGACTCGGTCATCAATCGAAATCCATAAATTGCCTCCA
GTCAACAACAATGATGTTCCTGATTCCACTGACGGTAAATTCTATTCTCG
ATCAGTCTCAAATTTTCTGGGCAAAGAGACGTTGCTGCATACTGAACCAT
TTGAGACTTCCGAAAAGGTTGGTCCAGAGGGAATATATGAGAGACTGTTT
GAAGTTCATTTTAGAGTCCCTGATGAACATCTTGATCCAAACCAGTTGCC
GTATAATTTTGTAGTGGTCGCCAACGGAACAGGGGGGCGCCTAGAGCAAG
ACGGTACCGTTTCTCAAAAAATTGCCAATATATTCGGCAAAAATGAGCTT
AAACACCTTGATTGGTGGAAGTTGATTGCTGAGAATATCCCGTTAGTTAT
CGCAGGGATTGCTGCGTTACTTAGTGGCAAAGTCTATTTTGATCAGTTGG
AATATGATCGAAAGAGTTTGACCCGCTTTTCAATTCCGATGGCTGATACA
AACTTGTCCATCTTTACCGTTGGGGATGGGATAGAGAACGTCTGGGGCAC
GCCTCAAAACATCTGCATGATCAGCGGTAAATATTCCGTCAAAAATATTG
GAGACTTTCCTTGGGAAATGACTCGGTCATCAATCGAAATCCATAAATTG
CCTCCAGTCAACAACAATGATGTTCCTGATTCCACTGACGGTAAATTCTA
TTCTCGATCAGTCTCAAATTTTCTGGGCAAAGAGACGTTGCTGCATACTG
AACCATTTGAGACTTCCGAAAAGGTTGGTCCAGAGGGAATATATGAGAGA
CTGTTTGAAGTTCATTTTAGAGTCCCTGATGAACATCTTGATCCAAACCA
GTTGCCGTATAATTTTGTAGTGGTCGCCAACGGAACAGGGGGGCGCCTAG
AGCAAGACGGTACCGTTTCTCAAAAAATTGCCAATATATTCGGCAAAAAT
GAGCTTAAACAC
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