mRNA_P-canaliculata_contig9806.23903.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig9806	contig	P-canaliculata_contig9806:6568..10136 -

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig9806.23903.1	prot_P-canaliculata_contig9806.23903.1	Pelvetia canaliculata dioecious	polypeptide	P-canaliculata_contig9806 7408..10046 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622817342.556236-UTR-P-canaliculata_contig9806:6567..7407	1622817342.556236-UTR-P-canaliculata_contig9806:6567..7407	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig9806 6568..7407 -
1693495235.070569-UTR-P-canaliculata_contig9806:6567..7407	1693495235.070569-UTR-P-canaliculata_contig9806:6567..7407	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig9806 6568..7407 -
1622817342.6438878-UTR-P-canaliculata_contig9806:10046..10136	1622817342.6438878-UTR-P-canaliculata_contig9806:10046..10136	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig9806 10047..10136 -
1693495235.1605923-UTR-P-canaliculata_contig9806:10046..10136	1693495235.1605923-UTR-P-canaliculata_contig9806:10046..10136	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig9806 10047..10136 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622817342.5687935-CDS-P-canaliculata_contig9806:7407..7587	1622817342.5687935-CDS-P-canaliculata_contig9806:7407..7587	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig9806 7408..7587 -
1693495235.083269-CDS-P-canaliculata_contig9806:7407..7587	1693495235.083269-CDS-P-canaliculata_contig9806:7407..7587	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig9806 7408..7587 -
1622817342.5810146-CDS-P-canaliculata_contig9806:7715..7743	1622817342.5810146-CDS-P-canaliculata_contig9806:7715..7743	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig9806 7716..7743 -
1693495235.094664-CDS-P-canaliculata_contig9806:7715..7743	1693495235.094664-CDS-P-canaliculata_contig9806:7715..7743	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig9806 7716..7743 -
1622817342.5917075-CDS-P-canaliculata_contig9806:8060..8195	1622817342.5917075-CDS-P-canaliculata_contig9806:8060..8195	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig9806 8061..8195 -
1693495235.1061735-CDS-P-canaliculata_contig9806:8060..8195	1693495235.1061735-CDS-P-canaliculata_contig9806:8060..8195	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig9806 8061..8195 -
1622817342.6025875-CDS-P-canaliculata_contig9806:8457..8672	1622817342.6025875-CDS-P-canaliculata_contig9806:8457..8672	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig9806 8458..8672 -
1693495235.1243503-CDS-P-canaliculata_contig9806:8457..8672	1693495235.1243503-CDS-P-canaliculata_contig9806:8457..8672	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig9806 8458..8672 -
1622817342.6170435-CDS-P-canaliculata_contig9806:8967..9060	1622817342.6170435-CDS-P-canaliculata_contig9806:8967..9060	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig9806 8968..9060 -
1693495235.1395836-CDS-P-canaliculata_contig9806:8967..9060	1693495235.1395836-CDS-P-canaliculata_contig9806:8967..9060	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig9806 8968..9060 -
1622817342.630918-CDS-P-canaliculata_contig9806:9977..10046	1622817342.630918-CDS-P-canaliculata_contig9806:9977..10046	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig9806 9978..10046 -
1693495235.1511006-CDS-P-canaliculata_contig9806:9977..10046	1693495235.1511006-CDS-P-canaliculata_contig9806:9977..10046	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig9806 9978..10046 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-canaliculata_contig9806:6568..10136-
coding sequence from alignment at P-canaliculata_contig9806:6568..10136-

protein sequence of mRNA_P-canaliculata_contig9806.23903.1

>prot_P-canaliculata_contig9806.23903.1 ID=prot_P-canaliculata_contig9806.23903.1|Name=mRNA_P-canaliculata_contig9806.23903.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=240bp
MGAATVTDTKFGTLTSTVSVDPQERSASVDATLYTEDYGTFSTSLKAKDK
VKDKVDFLGPVRWTSKPLNFPFALKEPTPMVIGIVHDVKTKEGQLNFSAK
LSNNFDGKVVLPSTGDPIATVIASHSPDKDSDIRASANVLDLLGSGVGKG
SIGVSYRRDLDTVQVSDESLSRYPPSTVRQGSSSRVTLEGKDTGDFAWSL
SNTTKRMTLVLSGRGRLRLRGEEEGISSTVALRSSFRVF*

mRNA from alignment at P-canaliculata_contig9806:6568..10136-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-canaliculata_contig9806.23903.1 ID=mRNA_P-canaliculata_contig9806.23903.1|Name=mRNA_P-canaliculata_contig9806.23903.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3569bp|location=Sequence derived from alignment at P-canaliculata_contig9806:6568..10136- (Pelvetia canaliculata dioecious)
GTAATAGGAGTCTATGACCACCCGGTCAACGAGCAGGTCACCGGAAAGGC
CTCGTACTTGTTCAACAAGGACCGAGTCATCCCCGCTTCGATGGGTGCGG
CCACCGTCACCGACACCAAGTTCGGAACGCTCACGAGCACGGTTTCCGTT
GACCCACAGGTAAAAACAATGTACGAGAGGGCTCCGCGCGGGCGAGCCGT
TCGCTGCCTTGTAGTGCACAGTATCTGGTACAGCATTCTTGTGCAGTATC
TGTGTCAAATCGCGTGAGTCAGTAGTGCGGAATTCGTGAGGGGCACCAGA
GCAGTTAAACCTCGCACAAGCCAAGCCATTGAACCCATTGGGAGTCCGCA
GGCTAAAATCGGGCTTCGTTTAGGTTCAAGATTAAGAAGCTTAGGGTTAG
GGTTGGGTCGGATCCACAATAGCCGAGAAGGGAAGAAAATAATATCGCAC
ATGTGCCACACGAAAACGTAAATTGGACTCTCTCTCTCTCTCGCTCGAGA
AAAAAGCAAGACTTTCACAATTAATTGCCATCTGACTTCCTTGTGCACAC
CAGGTGTGCGCGTAGGAATCCCCGACGCGGCAAGGAGTTGCAGTCGTGGA
AGCGTTCACCCCACTATTAATAGATGTTGACGATATCGATATTGTAACTC
ACATACATCGTCATGCGTGGCGCGAGCTCTCGAAATTCTGGTCCAGCCCT
TAGATCTGACAAGTGATAAGACGGCCGTGTTGATTGGGGCGTGTGGGTTT
GAAAAGACATGATGCGCCAACCTTAGCTTGCGCCTTTCTGTTTGTTGAGC
TACCAAAGCGTCAAATCGCTGACGTGTATTGTTTGTAACAAGATAGAGTC
ATCTGTATATAGTCTACCGGCGAGAGCTTAAGGGACAGAAAGGGCTATGC
GGCTGCATCCTGAGTTCTTGTAGCCCCTCACTTCGATACCATATTTCCAC
CCCAAACACATTCTGTTCCGTCGCGCGTAACGTCCCCTCCCCTGTTTCGT
ATCCTGGGCTTCGTTTCCCCTTGCACCCTGTATGCATTGCCTGGTATACA
ATAAATCATATTGATATCTATTGCAGGAGAGGAGCGCTAGCGTGGATGCG
ACTCTATACACCGAGGACTACGGGACGTTCTCTACCTCGTTGAAAGCAAA
GGACAAGGTAAAGGACAAGGTGATGGTGATGATTACAGGGATAGAGCTAT
AGTAGAGTGTGGATAATACGTAAAGCCTATATCATACATGAAGAACAAGC
AGTTCGTGATCCTGCGCGACTTTGGACAGCCCCGCCCGCCAAACTTTGAG
CGGTGAGTGGTACATGGAGTCCCATGCAAACCATCCACGTTCTGCGAGAA
GACCCGGGGCTCCGCTCGGTGCCACGGACCTCCCTTTTTGCTGATGCCGG
AGAGGGTAGCGTAACCTTCTTTCATAAATCACTATATGCTCGTGCGTGTT
GCGCGTGCGAACAGGTGGATTTTCTGGGCCCCGTCAGGTGGACGAGCAAG
CCGCTGAACTTCCCGTTCGCCCTGAAGGAGCCCACCCCCATGGTGATTGG
CATCGTGCACGACGTCAAGACGAAAGAGGGCCAGCTGAACTTCTCCGCCA
AGCTCAGCAACAACTTCGACGGGAAGGTCGTCCTCCCTTCGACGGGAGAC
CCGATCGCGACGGTGATCGCGTCGCACAGGTGCGGTCAAGGTCAAGGCCC
CCCTCTGGCCGTTTGGGCTCTCGCTCACCTCCACGTGCGGCCTCGGCGCT
CAAGCTTTGTAACCGTCGACGTCCCCCGGTGACGAGGTTTCGAATCCCCT
CCCTTGCTATTATTCATATTAATATTGAAGTATTATAGTAGCTCTGACAA
ACTCTTTCGCCCAAAATATTAGAGAACGTCCTTGCTTACTGTACCTGCGA
GACCGACTCCTTCGGCGTGTACCGACTTCACTGCCTGTCAGCCCGGACAA
GGACTCGGACATCAGGGCTTCGGCGAACGTGCTGGATCTTCTGGGCTCGG
GTGTTGGCAAGGGATCTATCGGAGTATCTTACAGGCGCGATTTGGACACC
GTGCAGGTGAGCGACGAGTCTCTCTCGTGTAGGGGAGGCATCGATTGGAA
CGACGTTCACACCTCTAGAGCCATGGAGCTACGCCAGTTAACAATTTTGT
GTACAGTACACTAGCTCTCTGATTGATAGCATTGCTTATAGTATGAGCGT
GTTCCGTTCTTTGCACAACCTTTGGAGTTCCAGTTTTATCTGTCGCAGCT
CCTTGCGGGGGGGATCACGCGCAACCCAGCACCAACATCGCCAACCTCTT
GAGCATAATAATATCTTGGGGATTTCGTAGTGATTGGTAGCTGTTGTAGG
CTGATGATGATGCCGCAGACTCCTTGCTGTATCTACTCTACAGTAGGTAT
CCCCCATCTACTGTACGCCAAGTACCCTATAAAAGTACCGGAGAAAACCT
TTCAAAAAGAGAAAAGTACTCCAGCTAAAGTCGACCCCACATAAGATTTC
GTAACGCTCGATACCGCTGGCCGCTCATGGATGTGCGTGTCGTGCTCAGG
GGTCGAGCTCTAGGGTCACCCTTGAGGGCAAGGACACGGGAGACTTCGCT
TGGAGCCTGAGCAATACAACTAAGCGGATGACGCTCGTGCTTTCTGGTAG
GGGTAGGCTGCGTCTGCGAGGCGAGGAGGAAGGGATCTCGAGCACCGTGG
CCCTGAGATCAAGCTTCCGCGTGTTCTAGACTCGGCTTTGCGCAGCCCGA
GCGTGACGGCCGGTCGGTGGCACGTGTGCCGTGCCACCGTGCCCAATAAC
GTCCACTTTTCCCTGTAGAGTATCTTTTGGGCACGGCAATAGCGCCACAG
TCGGCCTACCAATATTTTTGTATTTGCAACTGCTGAAGTGACTTTTCGAT
GTCTGTTTTAGATTATATGCTGTACTGCCTTGACGTTGTTCGTTCTGCTG
AAGGTTTCGAACAGTGGCGAAGGAATGCTGGATACGTCTCAGACTTTGTT
GACTAAATGGGTCTCTTGCGCTGCTGAAAAATGTTTGATGAGTTGAGATC
AAGTCACATTTGCTTCGAGAGGGCGCAAATACTGTACACCAGAAGCGACG
TGCAGTGTGGAAGTATGCCTCTAGAGATGTGCGATGGGAACACTATTTTG
GAACCTGCGCATTTGCCTGAGTATTAAATGCTGTCTTTTTACGATTTACT
CGTTCTTTTTCAGGTTTGATTTCACGCACCTCTGTACGCTTTTTTCCTGA
ACAGTAGGCAGGGAGACCGCCCTGACTTGAGAATTATGATACTCTGATCC
GACGAAACTCGTGAAGATTTTAAACCAGCTAGAGTAATAGCCTTTCGTCA
AATCGTATCAACCCGCGTCAGCGAGCTGAATCAAACCGTACCCTGTCACT
TTAGGGATTCCAAGAAGACTAGGCTTGACTTGAGTGCAATGCAAGGAGGC
ATGCATGACTGCCGTACCCACTTTTGTCTTCTTTTTTTAACAGCCGACGG
TCTGTGAGACCACTTTCGACACTTGATTAAAAAAGAGTTCACTCCGCTCT
ATATTTGCCGGGTAGTTGA

Coding sequence (CDS) from alignment at P-canaliculata_contig9806:6568..10136-

>mRNA_P-canaliculata_contig9806.23903.1 ID=mRNA_P-canaliculata_contig9806.23903.1|Name=mRNA_P-canaliculata_contig9806.23903.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1440bp|location=Sequence derived from alignment at P-canaliculata_contig9806:6568..10136- (Pelvetia canaliculata dioecious)
ATGGGTGCGGCCACCGTCACCGACACCAAGTTCGGAACGCTCACGAGCAC
GGTTTCCGTTGACCCACAGATGGGTGCGGCCACCGTCACCGACACCAAGT
TCGGAACGCTCACGAGCACGGTTTCCGTTGACCCACAGGAGAGGAGCGCT
AGCGTGGATGCGACTCTATACACCGAGGACTACGGGACGTTCTCTACCTC
GTTGAAAGCAAAGGACAAGGTAAAGGACAAGGAGAGGAGCGCTAGCGTGG
ATGCGACTCTATACACCGAGGACTACGGGACGTTCTCTACCTCGTTGAAA
GCAAAGGACAAGGTAAAGGACAAGGTGGATTTTCTGGGCCCCGTCAGGTG
GACGAGCAAGCCGCTGAACTTCCCGTTCGCCCTGAAGGAGCCCACCCCCA
TGGTGATTGGCATCGTGCACGACGTCAAGACGAAAGAGGGCCAGCTGAAC
TTCTCCGCCAAGCTCAGCAACAACTTCGACGGGAAGGTCGTCCTCCCTTC
GACGGGAGACCCGATCGCGACGGTGATCGCGTCGCACAGGTGGATTTTCT
GGGCCCCGTCAGGTGGACGAGCAAGCCGCTGAACTTCCCGTTCGCCCTGA
AGGAGCCCACCCCCATGGTGATTGGCATCGTGCACGACGTCAAGACGAAA
GAGGGCCAGCTGAACTTCTCCGCCAAGCTCAGCAACAACTTCGACGGGAA
GGTCGTCCTCCCTTCGACGGGAGACCCGATCGCGACGGTGATCGCGTCGC
ACAGCCCGGACAAGGACTCGGACATCAGGGCTTCGGCGAACGTGCTGGAT
CTTCTGGGCTCGGGTGTTGGCAAGGGATCTATCGGAGTATCTTACAGGCG
CGATTTGGACACCGTGCAGGTGAGCGACGAGTCTCTCTCCCCGGACAAGG
ACTCGGACATCAGGGCTTCGGCGAACGTGCTGGATCTTCTGGGCTCGGGT
GTTGGCAAGGGATCTATCGGAGTATCTTACAGGCGCGATTTGGACACCGT
GCAGGTGAGCGACGAGTCTCTCTCTAGGTATCCCCCATCTACTGTACGCC
AATAGGTATCCCCCATCTACTGTACGCCAAGGGTCGAGCTCTAGGGTCAC
CCTTGAGGGCAAGGACACGGGAGACTTCGCTTGGAGCCTGAGCAATACAA
CTAAGCGGATGACGCTCGTGCTTTCTGGTAGGGGTAGGCTGCGTCTGCGA
GGCGAGGAGGAAGGGATCTCGAGCACCGTGGCCCTGAGATCAAGCTTCCG
CGTGTTCTAGGGGTCGAGCTCTAGGGTCACCCTTGAGGGCAAGGACACGG
GAGACTTCGCTTGGAGCCTGAGCAATACAACTAAGCGGATGACGCTCGTG
CTTTCTGGTAGGGGTAGGCTGCGTCTGCGAGGCGAGGAGGAAGGGATCTC
GAGCACCGTGGCCCTGAGATCAAGCTTCCGCGTGTTCTAG

mRNA_P-canaliculata_contig9806.23903.1 (mRNA) Pelvetia canaliculata dioecious

ZOOM

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POSITION

0