mRNA_P-canaliculata_contig98004.23896.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig98004.23896.1
Unique NamemRNA_P-canaliculata_contig98004.23896.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig98004.23896.1 vs. uniprot
Match: UPI001671D6DE (tRNA guanosine(34) transglycosylase Tgt n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI001671D6DE)

HSP 1 Score: 613 bits (1580), Expect = 2.820e-220
Identity = 297/321 (92.52%), Postives = 310/321 (96.57%), Query Frame = 1 
Query:    1 ILGNTYHPMLRPGAERVARMGGLHKFGGWEGPILTDSGGFQVWSLSKLPKMTEEGVTFQSHLDGSKHMLSPERSIEIQADLLGADISMQLDECTDFPVSYDKAAQSMELSLRWGKRSLAAFGDRENQTLFAIVQGSNFPELRKLSAEASIKEDTAGGYGGFAIGGLAVGEGHAAMCETLSVTTPHLPKDRPRYLMGVGKPIDIVEAVYRGVDMFDCVIPTRSGRHGQVWTDTGPYNIKRAEFAEDQNPLDPEISCPASQDYTKAYVHHLIRSNELLGAMILSWHNIAYFEDLMSRIRAAIAAGSFETFITEFRANWSKPTT 963
            ILGNTYH MLRPGAERVARMGGLHKFGGW+GPILTDSGGFQVWSLSKL KMTEEGVTFQSHLDGSKHMLSPERSIEIQADLLGADISMQLDECTDFPVSYDKAAQSMELSLRWGKRSLAAFG+R +QTLFAIVQGSNFPELRKLSAEAS+ EDTAGGYGGFAIGGLAVGEGH+AMCETLSVTTP+LP DRPRYLMGVGKPIDIVEAVYRGVDMFDCVIPTRSGRHGQVWTD GPYNIKRAEFAE+Q PLD  I CPASQDYTKAYVHHLIRS ELLGAMILSWHNIAYFEDLM+RIRA+IAAG+FE+F+TEFRANWS+PTT
Sbjct:   57 ILGNTYHLMLRPGAERVARMGGLHKFGGWDGPILTDSGGFQVWSLSKLRKMTEEGVTFQSHLDGSKHMLSPERSIEIQADLLGADISMQLDECTDFPVSYDKAAQSMELSLRWGKRSLAAFGERSDQTLFAIVQGSNFPELRKLSAEASVAEDTAGGYGGFAIGGLAVGEGHSAMCETLSVTTPYLPADRPRYLMGVGKPIDIVEAVYRGVDMFDCVIPTRSGRHGQVWTDQGPYNIKRAEFAENQEPLDDAIQCPASQDYTKAYVHHLIRSGELLGAMILSWHNIAYFEDLMARIRASIAAGTFESFVTEFRANWSQPTT 377
[Close]
BLAST of mRNA_P-canaliculata_contig98004.23896.1 vs. uniprot
Match: UPI0003FA0355 (tRNA guanosine(34) transglycosylase Tgt n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI0003FA0355)

HSP 1 Score: 546 bits (1408), Expect = 3.970e-194
Identity = 259/316 (81.96%), Postives = 287/316 (90.82%), Query Frame = 1 
Query:    1 ILGNTYHPMLRPGAERVARMGGLHKFGGWEGPILTDSGGFQVWSLSKLPKMTEEGVTFQSHLDGSKHMLSPERSIEIQADLLGADISMQLDECTDFPVSYDKAAQSMELSLRWGKRSLAAFGDRENQTLFAIVQGSNFPELRKLSAEASIKEDTAGGYGGFAIGGLAVGEGHAAMCETLSVTTPHLPKDRPRYLMGVGKPIDIVEAVYRGVDMFDCVIPTRSGRHGQVWTDTGPYNIKRAEFAEDQNPLDPEISCPASQDYTKAYVHHLIRSNELLGAMILSWHNIAYFEDLMSRIRAAIAAGSFETFITEFRANW 948
            ILGNTYH MLRPGAERV ++GGLHKFGGW GPILTDSGGFQVWSLSKL KMTEEGV FQSH DGSKHMLSPERSIEIQADLLGADISMQLDECT+FP  Y+ AA+SMELSLRWGKRSLA FG+RENQTLFAIVQGS F +LR++SAEAS++EDTAGGYGG+AIGGLAVGEGH AMCET+  T PHLP+DRPRYLMGVGKPID+VEAV RGVDMFDCVIPTRSGRHGQVWTD GPYNIK+A++AED++P+D +I CPASQ+Y+KAYVHHLIRS ELLGAMILSWHNIAYF+ LM+R+R AIAAG F +F   FR NW
Sbjct:   57 ILGNTYHLMLRPGAERVKKLGGLHKFGGWTGPILTDSGGFQVWSLSKLRKMTEEGVEFQSHHDGSKHMLSPERSIEIQADLLGADISMQLDECTEFPSPYEAAAKSMELSLRWGKRSLAYFGERENQTLFAIVQGSTFEDLRRMSAEASVREDTAGGYGGYAIGGLAVGEGHEAMCETIDFTVPHLPEDRPRYLMGVGKPIDLVEAVARGVDMFDCVIPTRSGRHGQVWTDAGPYNIKKAQYAEDESPIDEDIDCPASQNYSKAYVHHLIRSGELLGAMILSWHNIAYFQHLMARMRGAIAAGEFVSFAQNFRKNW 372
[Close]
BLAST of mRNA_P-canaliculata_contig98004.23896.1 vs. uniprot
Match: A0A848V4P0_9PROT (Queuine tRNA-ribosyltransferase n=1 Tax=Hellea sp. TaxID=2715692 RepID=A0A848V4P0_9PROT)

HSP 1 Score: 530 bits (1364), Expect = 2.130e-187
Identity = 254/316 (80.38%), Postives = 280/316 (88.61%), Query Frame = 1 
Query:    1 ILGNTYHPMLRPGAERVARMGGLHKFGGWEGPILTDSGGFQVWSLSKLPKMTEEGVTFQSHLDGSKHMLSPERSIEIQADLLGADISMQLDECTDFPVSYDKAAQSMELSLRWGKRSLAAFGDRENQTLFAIVQGSNFPELRKLSAEASIKEDTAGGYGGFAIGGLAVGEGHAAMCETLSVTTPHLPKDRPRYLMGVGKPIDIVEAVYRGVDMFDCVIPTRSGRHGQVWTDTGPYNIKRAEFAEDQNPLDPEISCPASQDYTKAYVHHLIRSNELLGAMILSWHNIAYFEDLMSRIRAAIAAGSFETFITEFRANW 948
            ILGNTYH MLRPGAERV ++GGLHKFGGW GPILTDSGGFQVWSLSKL KMTEEGVTFQSH+DGSK+MLSPERSIEIQA+LLGADISMQLDECT+FP  ++ A +SMELSLRWGKRSL AFG+RENQTLFAIVQGS F ELR+ SAEAS+ E TAGGYGGFAIGGLAVGEGH AMCETL  T P LP+DRPRYLMGVGKPID+VEAVYRG+DMFDCVIPTRSGRHGQVWTD GPYNIK A FAED+  LD  I+C ASQDY+KAY+HHL+RS ELLG+M+LSWHNIAYF++LM RIRA I AG F  F  +FRAN+
Sbjct:   57 ILGNTYHLMLRPGAERVKKLGGLHKFGGWNGPILTDSGGFQVWSLSKLRKMTEEGVTFQSHIDGSKYMLSPERSIEIQANLLGADISMQLDECTEFPSPFESAEKSMELSLRWGKRSLEAFGERENQTLFAIVQGSTFQELRRRSAEASVHESTAGGYGGFAIGGLAVGEGHNAMCETLEFTVPFLPQDRPRYLMGVGKPIDLVEAVYRGIDMFDCVIPTRSGRHGQVWTDRGPYNIKNARFAEDEGSLDRTINCAASQDYSKAYIHHLVRSGELLGSMLLSWHNIAYFQNLMHRIRATIEAGDFVEFRQKFRANY 372
[Close]
BLAST of mRNA_P-canaliculata_contig98004.23896.1 vs. uniprot
Match: A0A420WKU0_9PROT (Queuine tRNA-ribosyltransferase n=1 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WKU0_9PROT)

HSP 1 Score: 521 bits (1343), Expect = 3.110e-184
Identity = 251/316 (79.43%), Postives = 277/316 (87.66%), Query Frame = 1 
Query:    1 ILGNTYHPMLRPGAERVARMGGLHKFGGWEGPILTDSGGFQVWSLSKLPKMTEEGVTFQSHLDGSKHMLSPERSIEIQADLLGADISMQLDECTDFPVSYDKAAQSMELSLRWGKRSLAAFGDRENQTLFAIVQGSNFPELRKLSAEASIKEDTAGGYGGFAIGGLAVGEGHAAMCETLSVTTPHLPKDRPRYLMGVGKPIDIVEAVYRGVDMFDCVIPTRSGRHGQVWTDTGPYNIKRAEFAEDQNPLDPEISCPASQDYTKAYVHHLIRSNELLGAMILSWHNIAYFEDLMSRIRAAIAAGSFETFITEFRANW 948
            ILGNTYH MLRPGAERV ++GGLHKFGGW GPILTDSGGFQVWSLSKL KM+E GV FQSHLDGS+HMLSPERSIEIQADLLGADISMQLDECT FP ++++A  SMELSLRWG+RSL AFG+RE+QTLFAIVQGS FP+LR+ SA +S  E  AGGYGG+AIGGLAVGEGH  MCE L  TT HLP+DRPRYLMGVGKPID+VEAV RGVDMFDCVIPTRSGRHGQVWTDTGPYNIKRAEF+ED++PLD  ISC AS  Y+KAYVHHL+RS E+LG MILSWHNIAYFEDLM+RIR+AI    FE F+ EFR NW
Sbjct:   57 ILGNTYHLMLRPGAERVKKLGGLHKFGGWSGPILTDSGGFQVWSLSKLRKMSEAGVEFQSHLDGSRHMLSPERSIEIQADLLGADISMQLDECTAFPSTHEQAKSSMELSLRWGRRSLEAFGERESQTLFAIVQGSTFPDLREKSAISSRTEGAAGGYGGYAIGGLAVGEGHEMMCEVLDFTTLHLPEDRPRYLMGVGKPIDLVEAVARGVDMFDCVIPTRSGRHGQVWTDTGPYNIKRAEFSEDESPLDETISCEASNAYSKAYVHHLVRSKEMLGGMILSWHNIAYFEDLMARIRSAIFEQRFEAFVEEFRKNW 372
[Close]
BLAST of mRNA_P-canaliculata_contig98004.23896.1 vs. uniprot
Match: A0A8J3CUG3_9PROT (Queuine tRNA-ribosyltransferase n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3CUG3_9PROT)

HSP 1 Score: 513 bits (1322), Expect = 4.240e-181
Identity = 246/317 (77.60%), Postives = 278/317 (87.70%), Query Frame = 1 
Query:    1 ILGNTYHPMLRPGAERVARMGGLHKFGGWEGPILTDSGGFQVWSLSKLPKMTEEGVTFQSHLDGSKHMLSPERSIEIQADLLGADISMQLDECTDFPVSYDKAAQSMELSLRWGKRSLAAFGDRENQTLFAIVQGSNFPELRKLSAEASIKEDTAGGYGGFAIGGLAVGEGHAAMCETLSVTTPHLPKDRPRYLMGVGKPIDIVEAVYRGVDMFDCVIPTRSGRHGQVWTDTGPYNIKRAEFAEDQNPLDPEISCPASQDYTKAYVHHLIRSNELLGAMILSWHNIAYFEDLMSRIRAAIAAGSFETFITEFRANWS 951
            ILGNTYH MLRPGAER+AR+GGLHKF GW+GP+LTDSGGFQVWSLSKL KM+EEGV F+SH+DGSKHMLSPERS+EIQA+LLGADI MQ DECT FP + D+A  SMELSLRWG RSLAAFGDR +QTLFAIVQGS + +LR  SA+ SI+   AGGYGG+AIGGLAVGEGH  MC  L VTTPHLP DRPRYLMGVGKPID+VEAVYRGVDMFDCVIPTRSGRHGQVWTDTGPYNI++AEFAED +PLDP I CPASQ+Y+KAYVHHLIRS E+LG MILS HNIAYFEDLM RIR  I +G+++ F+++FRA W+
Sbjct:   57 ILGNTYHLMLRPGAERIARLGGLHKFCGWDGPMLTDSGGFQVWSLSKLRKMSEEGVEFRSHIDGSKHMLSPERSMEIQAELLGADICMQFDECTPFPATPDQARASMELSLRWGARSLAAFGDRPDQTLFAIVQGSTYADLRAESAQRSIE---AGGYGGYAIGGLAVGEGHEMMCSVLDVTTPHLPADRPRYLMGVGKPIDLVEAVYRGVDMFDCVIPTRSGRHGQVWTDTGPYNIRKAEFAEDDSPLDPAIDCPASQNYSKAYVHHLIRSGEMLGQMILSRHNIAYFEDLMRRIRTEITSGTYDRFVSDFRAAWA 370
[Close]
BLAST of mRNA_P-canaliculata_contig98004.23896.1 vs. uniprot
Match: A0A2G2QYQ0_9PROT (Queuine tRNA-ribosyltransferase n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2QYQ0_9PROT)

HSP 1 Score: 513 bits (1322), Expect = 5.070e-181
Identity = 247/319 (77.43%), Postives = 281/319 (88.09%), Query Frame = 1 
Query:    1 ILGNTYHPMLRPGAERVARMGGLHKFGGWEGPILTDSGGFQVWSLSKLPKMTEEGVTFQSHLDGSKHMLSPERSIEIQADLLGADISMQLDECTDFPVSYDKAAQSMELSLRWGKRSLAAFGDRENQTLFAIVQGSNFPELRKLSAEASIKEDTAG-GYGGFAIGGLAVGEGHAAMCETLSVTTPHLPKDRPRYLMGVGKPIDIVEAVYRGVDMFDCVIPTRSGRHGQVWTDTGPYNIKRAEFAEDQNPLDPEISCPASQDYTKAYVHHLIRSNELLGAMILSWHNIAYFEDLMSRIRAAIAAGSFETFITEFRANWSK 954
            ILGNTYH MLRP AERVA++GGLHKF GW GP+LTDSGGFQVWSLSKL KM+E+GV FQSHLDGSKHMLSPERSIEIQA+LLGADI MQLDECT+FP + D+AA+SMELSLRWGKRSL AFG+R+ QTLFAIVQGS FP+LR++SAEAS++    G GYGG+AIGGLAVGEGH AM ETL    PHLP  RPRYLMGVGKPID+VE+V RGVDMFDCVIPTRSGRHGQVW+D GPYNIKRAEFAED +PLDP I CPAS+DY+KAY+HHLIRS ELLG M+LSWHNIAYF++LM+R+R AI++GSFE F  +F+ NW K
Sbjct:   57 ILGNTYHLMLRPSAERVAKLGGLHKFSGWRGPMLTDSGGFQVWSLSKLRKMSEKGVEFQSHLDGSKHMLSPERSIEIQAELLGADICMQLDECTNFPATRDEAARSMELSLRWGKRSLEAFGERDIQTLFAIVQGSIFPDLRQMSAEASVQTQVNGRGYGGYAIGGLAVGEGHEAMLETLENVMPHLPITRPRYLMGVGKPIDLVESVARGVDMFDCVIPTRSGRHGQVWSDAGPYNIKRAEFAEDISPLDPSIECPASRDYSKAYIHHLIRSGELLGGMLLSWHNIAYFQNLMARMRQAISSGSFEEFGHDFKRNWQK 375
[Close]
BLAST of mRNA_P-canaliculata_contig98004.23896.1 vs. uniprot
Match: UPI0003824FA4 (tRNA guanosine(34) transglycosylase Tgt n=1 Tax=Robiginitomaculum antarcticum TaxID=437507 RepID=UPI0003824FA4)

HSP 1 Score: 508 bits (1308), Expect = 9.110e-179
Identity = 247/315 (78.41%), Postives = 271/315 (86.03%), Query Frame = 1 
Query:    1 ILGNTYHPMLRPGAERVARMGGLHKFGGWEGPILTDSGGFQVWSLSKLPKMTEEGVTFQSHLDGSKHMLSPERSIEIQADLLGADISMQLDECTDFPVSYDKAAQSMELSLRWGKRSLAAFGDRENQTLFAIVQGSNFPELRKLSAEASIKEDTAGG-YGGFAIGGLAVGEGHAAMCETLSVTTPHLPKDRPRYLMGVGKPIDIVEAVYRGVDMFDCVIPTRSGRHGQVWTDTGPYNIKRAEFAEDQNPLDPEISCPASQDYTKAYVHHLIRSNELLGAMILSWHNIAYFEDLMSRIRAAIAAGSFETFITEFRA 942
            ILGNTYH MLRPGAERVA++GGLHKFGGW GPILTDSGGFQVWSLSKL KM+E+GV FQSHLDGSKHMLSPERSIEIQADLLGADISMQLDECT+FP + ++AA SMELSLRWG+RSLAAFG RE Q LFAIVQGS F +LR  SA+AS++ +  G  YGGFAIGGLAVGEGH AMC  L  T PHLPKDRPRYLMGVGKPID+VEAV RGVDMFDCVIPTRSGRHGQVWTD GPYNIK A FAED   LD  + C AS+DY+KAY+HHLIRS ELLGAM+LSWHNIAYF+ LM+R+RAAIA G F  F+  FRA
Sbjct:   57 ILGNTYHLMLRPGAERVAKLGGLHKFGGWSGPILTDSGGFQVWSLSKLRKMSEKGVEFQSHLDGSKHMLSPERSIEIQADLLGADISMQLDECTNFPATREEAASSMELSLRWGQRSLAAFGQREAQNLFAIVQGSTFEDLRIHSAQASVQAEAGGARYGGFAIGGLAVGEGHEAMCNVLDYTVPHLPKDRPRYLMGVGKPIDLVEAVARGVDMFDCVIPTRSGRHGQVWTDKGPYNIKNARFAEDDTALDESLPCAASRDYSKAYIHHLIRSGELLGAMLLSWHNIAYFQGLMARMRAAIAEGEFNAFVDTFRA 371
[Close]
BLAST of mRNA_P-canaliculata_contig98004.23896.1 vs. uniprot
Match: A0A520XJ89_9ACTN (Queuine tRNA-ribosyltransferase n=2 Tax=Bacteria TaxID=2 RepID=A0A520XJ89_9ACTN)

HSP 1 Score: 503 bits (1295), Expect = 6.510e-177
Identity = 245/319 (76.80%), Postives = 275/319 (86.21%), Query Frame = 1 
Query:    1 ILGNTYHPMLRPGAERVARMGGLHKFGGWEGPILTDSGGFQVWSLSKLPKMTEEGVTFQSHLDGSKHMLSPERSIEIQADLLGADISMQLDECTDFPVSYDKAAQSMELSLRWGKRSLAAFGDRENQTLFAIVQGSNFPELRKLSAEASIKEDTAG-GYGGFAIGGLAVGEGHAAMCETLSVTTPHLPKDRPRYLMGVGKPIDIVEAVYRGVDMFDCVIPTRSGRHGQVWTDTGPYNIKRAEFAEDQNPLDPEISCPASQDYTKAYVHHLIRSNELLGAMILSWHNIAYFEDLMSRIRAAIAAGSFETFITEFRANWSK 954
            ILGNTYH MLRPGAER+AR+GGLHKFGGW GPILTDSGGFQVWSLSKL KM+E+GV FQSH+DGSKHMLSPERSIEIQADLLGADISMQLDECT+FP + D+AA+SME+SLRWGKRSL AFG+RE QTLFAIVQGS FP+LRK SAEAS+     G GYGG+AIGGLAVGEGH AM ETL    PHLP +RPRYLMGVGKPID+VE+V RGVDMFDCVIPTRSGRHGQVW DTGPYNIK A+FAED  PLD  I+C AS  Y+KAY+HHL+RS ELLG+MILSWHNIAY+++LMSRIRA+I    +  F+ +FR N  K
Sbjct:   57 ILGNTYHLMLRPGAERLARLGGLHKFGGWTGPILTDSGGFQVWSLSKLRKMSEKGVEFQSHIDGSKHMLSPERSIEIQADLLGADISMQLDECTNFPSTRDEAAKSMEMSLRWGKRSLEAFGEREAQTLFAIVQGSTFPDLRKKSAEASVDTKVNGIGYGGYAIGGLAVGEGHEAMLETLENVMPHLPANRPRYLMGVGKPIDLVESVARGVDMFDCVIPTRSGRHGQVWADTGPYNIKSAKFAEDLTPLDETIACEASAKYSKAYIHHLVRSGELLGSMILSWHNIAYYQNLMSRIRASIKRRDYAEFVCKFRQNLEK 375
[Close]
BLAST of mRNA_P-canaliculata_contig98004.23896.1 vs. uniprot
Match: A0A2G2J0I7_9PROT (Queuine tRNA-ribosyltransferase n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2J0I7_9PROT)

HSP 1 Score: 503 bits (1295), Expect = 6.990e-177
Identity = 246/316 (77.85%), Postives = 271/316 (85.76%), Query Frame = 1 
Query:    1 ILGNTYHPMLRPGAERVARMGGLHKFGGWEGPILTDSGGFQVWSLSKLPKMTEEGVTFQSHLDGSKHMLSPERSIEIQADLLGADISMQLDECTDFPVSYDKAAQSMELSLRWGKRSLAAFGDRENQTLFAIVQGSNFPELRKLSAEASIKEDTAG-GYGGFAIGGLAVGEGHAAMCETLSVTTPHLPKDRPRYLMGVGKPIDIVEAVYRGVDMFDCVIPTRSGRHGQVWTDTGPYNIKRAEFAEDQNPLDPEISCPASQDYTKAYVHHLIRSNELLGAMILSWHNIAYFEDLMSRIRAAIAAGSFETFITEFRAN 945
            ILGNTYH MLRPGAERVAR+GGLH  GGW+GPILTDSGGFQVWSLSKL KM+E+GV FQSHLDGSKHMLSPERSIEIQADLLGADI MQLDECT+FP ++ +AA+SMELSLRWGKRSL AFGDRE QTLFAIVQGS FP+LR++SAE+S++    G GYGGFAIGGLAVGEGH AM E L    PHLP  RPRYLMGVGKPID+VE+V RGVDMFDCVIPTRSGRHGQVWTDTGPYNIK A FAED +PLD  I CPAS DY+KAY+HHLIR  ELLG M+LSWHNIAY+++LM RIRA+I AG F  F   FR N
Sbjct:   57 ILGNTYHLMLRPGAERVARLGGLHALGGWKGPILTDSGGFQVWSLSKLRKMSEKGVEFQSHLDGSKHMLSPERSIEIQADLLGADICMQLDECTNFPSTHAEAAKSMELSLRWGKRSLEAFGDREIQTLFAIVQGSTFPDLRQISAESSVEARVNGAGYGGFAIGGLAVGEGHEAMLEVLENVMPHLPAARPRYLMGVGKPIDLVESVARGVDMFDCVIPTRSGRHGQVWTDTGPYNIKSARFAEDLSPLDASIDCPASCDYSKAYIHHLIRCGELLGGMLLSWHNIAYYQNLMQRIRASIVAGRFNEFADNFRKN 372
[Close]
BLAST of mRNA_P-canaliculata_contig98004.23896.1 vs. uniprot
Match: A0A550KI83_9PROT (Queuine tRNA-ribosyltransferase n=1 Tax=Glycocaulis profundi TaxID=2518983 RepID=A0A550KI83_9PROT)

HSP 1 Score: 481 bits (1238), Expect = 2.740e-168
Identity = 226/318 (71.07%), Postives = 269/318 (84.59%), Query Frame = 1 
Query:    1 ILGNTYHPMLRPGAERVARMGGLHKFGGWEGPILTDSGGFQVWSLSKLPKMTEEGVTFQSHLDGSKHMLSPERSIEIQADLLGADISMQLDECTDFPVSYDKAAQSMELSLRWGKRSLAAFGDRENQTLFAIVQGSNFPELRKLSAEASIKEDTAGGYGGFAIGGLAVGEGHAAMCETLSVTTPHLPKDRPRYLMGVGKPIDIVEAVYRGVDMFDCVIPTRSGRHGQVWTDTGPYNIKRAEFAEDQNPLDPEISCPASQDYTKAYVHHLIRSNELLGAMILSWHNIAYFEDLMSRIRAAIAAGSFETFITEFRANWSK 954
            ILGNTYH MLRPGAERVAR+GGLH+F GW+GPILTDSGGFQVWSLS L KM+E+GV F+SH+DGSKHML+PERSIEIQADLLGADISMQ DECT FP   D+AA+SMELS+RWG RS AAFG+R++Q LF IVQGS + +LR+ SAEA I+     G+ G+A+GGLAVGEG   MC+ L  TTPHLP DRPRYLMGVG+PID+VEAV RG+DMFDCV+PTRSGRHGQ W+D GP+N+K A +AEDQ+PLD  I CPAS+D++KAY+HHL+R+ E LG+MILSWHN+AY+E LM+R+RAAIA G FE F  EFRA W +
Sbjct:   56 ILGNTYHLMLRPGAERVARLGGLHRFMGWDGPILTDSGGFQVWSLSALRKMSEQGVEFKSHIDGSKHMLTPERSIEIQADLLGADISMQFDECTPFPCERDEAARSMELSVRWGARSKAAFGERQSQALFGIVQGSVYEDLRRQSAEALIET----GFDGYAVGGLAVGEGFETMCQVLDATTPHLPGDRPRYLMGVGRPIDLVEAVARGIDMFDCVMPTRSGRHGQAWSDFGPFNLKNARYAEDQSPLDESIDCPASRDWSKAYLHHLVRAGEYLGSMILSWHNVAYYEHLMARMRAAIAEGRFEAFRAEFRARWEQ 369
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98004.23896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001671D6DE2.820e-22092.52tRNA guanosine(34) transglycosylase Tgt n=1 Tax=Li... [more]
UPI0003FA03553.970e-19481.96tRNA guanosine(34) transglycosylase Tgt n=1 Tax=He... [more]
A0A848V4P0_9PROT2.130e-18780.38Queuine tRNA-ribosyltransferase n=1 Tax=Hellea sp.... [more]
A0A420WKU0_9PROT3.110e-18479.43Queuine tRNA-ribosyltransferase n=1 Tax=Litorimona... [more]
A0A8J3CUG3_9PROT4.240e-18177.60Queuine tRNA-ribosyltransferase n=1 Tax=Algimonas ... [more]
A0A2G2QYQ0_9PROT5.070e-18177.43Queuine tRNA-ribosyltransferase n=1 Tax=Robiginito... [more]
UPI0003824FA49.110e-17978.41tRNA guanosine(34) transglycosylase Tgt n=1 Tax=Ro... [more]
A0A520XJ89_9ACTN6.510e-17776.80Queuine tRNA-ribosyltransferase n=2 Tax=Bacteria T... [more]
A0A2G2J0I7_9PROT6.990e-17777.85Queuine tRNA-ribosyltransferase n=1 Tax=Robiginito... [more]
A0A550KI83_9PROT2.740e-16871.07Queuine tRNA-ribosyltransferase n=1 Tax=Glycocauli... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98004contigP-canaliculata_contig98004:3..968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score533.1
Seed ortholog evalue8.8e-149
Seed eggNOG ortholog1121948.AUAC01000003_gene2269
Preferred nametgt
KEGG rclassRC00063
KEGG koko:K00773
KEGG ReactionR03789,R10209
GOsGO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008270,GO:0008479,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046116,GO:0046483,GO:0046872,GO:0046914,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
EggNOG free text desc.Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine)
EggNOG OGs1MUCA@1224,2TR87@28211,43WIJ@69657,COG0343@1,COG0343@2
EC2.4.2.29
COG Functional cat.J
BiGG ReactioniECW_1372.ECW_m0475,iWFL_1372.ECW_m0475
Best tax levelHyphomonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons1
Model size966
Cds size942
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817342.2010121-UTR-P-canaliculata_contig98004:2..261622817342.2010121-UTR-P-canaliculata_contig98004:2..26Pelvetia canaliculata dioeciousUTRP-canaliculata_contig98004 3..26 +
1693495234.9225686-UTR-P-canaliculata_contig98004:2..261693495234.9225686-UTR-P-canaliculata_contig98004:2..26Pelvetia canaliculata dioeciousUTRP-canaliculata_contig98004 3..26 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817342.2133913-CDS-P-canaliculata_contig98004:26..9681622817342.2133913-CDS-P-canaliculata_contig98004:26..968Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98004 27..968 +
1693495234.936667-CDS-P-canaliculata_contig98004:26..9681693495234.936667-CDS-P-canaliculata_contig98004:26..968Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98004 27..968 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98004.23896.1prot_P-canaliculata_contig98004.23896.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig98004 27..968 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig98004.23896.1

>prot_P-canaliculata_contig98004.23896.1 ID=prot_P-canaliculata_contig98004.23896.1|Name=mRNA_P-canaliculata_contig98004.23896.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=314bp
MLRPGAERVARMGGLHKFGGWEGPILTDSGGFQVWSLSKLPKMTEEGVTF
QSHLDGSKHMLSPERSIEIQADLLGADISMQLDECTDFPVSYDKAAQSME
LSLRWGKRSLAAFGDRENQTLFAIVQGSNFPELRKLSAEASIKEDTAGGY
GGFAIGGLAVGEGHAAMCETLSVTTPHLPKDRPRYLMGVGKPIDIVEAVY
RGVDMFDCVIPTRSGRHGQVWTDTGPYNIKRAEFAEDQNPLDPEISCPAS
QDYTKAYVHHLIRSNELLGAMILSWHNIAYFEDLMSRIRAAIAAGSFETF
ITEFRANWSKPTT*
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mRNA from alignment at P-canaliculata_contig98004:3..968+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig98004.23896.1 ID=mRNA_P-canaliculata_contig98004.23896.1|Name=mRNA_P-canaliculata_contig98004.23896.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=966bp|location=Sequence derived from alignment at P-canaliculata_contig98004:3..968+ (Pelvetia canaliculata dioecious)
ATCCTCGGCAATACTTATCACCCCATGCTCCGTCCCGGCGCGGAGCGGGT
GGCGCGTATGGGCGGCTTGCACAAGTTCGGCGGCTGGGAGGGTCCAATCC
TAACAGACTCCGGCGGCTTCCAAGTCTGGTCGCTTTCCAAACTCCCTAAA
ATGACGGAGGAGGGGGTGACCTTCCAAAGCCACTTGGACGGGTCGAAACA
TATGCTCTCGCCCGAGCGGTCAATCGAGATTCAAGCTGACCTCCTGGGCG
CGGATATCTCTATGCAGCTGGATGAGTGTACGGACTTCCCCGTCAGCTAC
GACAAGGCCGCGCAGTCGATGGAGCTGTCTCTGCGGTGGGGCAAACGCTC
CCTTGCGGCCTTCGGAGACCGGGAGAACCAAACCTTATTCGCAATCGTGC
AGGGATCAAATTTCCCCGAGCTCCGTAAGCTCTCCGCCGAAGCGTCGATC
AAAGAAGACACGGCTGGGGGCTATGGCGGCTTTGCGATTGGCGGCCTGGC
TGTTGGTGAAGGGCATGCCGCAATGTGTGAAACCTTGTCGGTCACAACGC
CGCATCTGCCAAAGGACCGCCCACGTTATCTGATGGGGGTCGGAAAGCCG
ATTGATATTGTAGAGGCTGTCTACCGCGGCGTGGATATGTTCGATTGTGT
CATTCCAACCCGATCCGGACGGCATGGTCAAGTTTGGACGGATACCGGGC
CTTACAATATCAAACGCGCCGAATTTGCCGAGGATCAAAACCCATTGGAT
CCCGAAATATCTTGTCCGGCGTCGCAAGATTACACGAAGGCTTATGTTCA
TCATTTGATACGGTCGAACGAGTTGCTGGGGGCCATGATCCTGTCATGGC
ACAACATCGCATATTTCGAAGATTTGATGTCGCGAATACGGGCTGCGATC
GCTGCAGGGTCATTCGAAACCTTCATCACGGAATTTCGCGCGAACTGGTC
GAAGCCAACAACATGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig98004:3..968+

>mRNA_P-canaliculata_contig98004.23896.1 ID=mRNA_P-canaliculata_contig98004.23896.1|Name=mRNA_P-canaliculata_contig98004.23896.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1884bp|location=Sequence derived from alignment at P-canaliculata_contig98004:3..968+ (Pelvetia canaliculata dioecious)
ATGCTCCGTCCCGGCGCGGAGCGGGTGGCGCGTATGGGCGGCTTGCACAA
GTTCGGCGGCTGGGAGGGTCCAATCCTAACAGACTCCGGCGGCTTCCAAG
TCTGGTCGCTTTCCAAACTCCCTAAAATGACGGAGGAGGGGGTGACCTTC
CAAAGCCACTTGGACGGGTCGAAACATATGCTCTCGCCCGAGCGGTCAAT
CGAGATTCAAGCTGACCTCCTGGGCGCGGATATCTCTATGCAGCTGGATG
AGTGTACGGACTTCCCCGTCAGCTACGACAAGGCCGCGCAGTCGATGGAG
CTGTCTCTGCGGTGGGGCAAACGCTCCCTTGCGGCCTTCGGAGACCGGGA
GAACCAAACCTTATTCGCAATCGTGCAGGGATCAAATTTCCCCGAGCTCC
GTAAGCTCTCCGCCGAAGCGTCGATCAAAGAAGACACGGCTGGGGGCTAT
GGCGGCTTTGCGATTGGCGGCCTGGCTGTTGGTGAAGGGCATGCCGCAAT
GTGTGAAACCTTGTCGGTCACAACGCCGCATCTGCCAAAGGACCGCCCAC
GTTATCTGATGGGGGTCGGAAAGCCGATTGATATTGTAGAGGCTGTCTAC
CGCGGCGTGGATATGTTCGATTGTGTCATTCCAACCCGATCCGGACGGCA
TGGTCAAGTTTGGACGGATACCGGGCCTTACAATATCAAACGCGCCGAAT
TTGCCGAGGATCAAAACCCATTGGATCCCGAAATATCTTGTCCGGCGTCG
CAAGATTACACGAAGGCTTATGTTCATCATTTGATACGGTCGAACGAGTT
GCTGGGGGCCATGATCCTGTCATGGCACAACATCGCATATTTCGAAGATT
TGATGTCGCGAATACGGGCTGCGATCGCTGCAGGGTCATTCGAAACCTTC
ATCACGGAATTTCGCGCGAACTGGTCGAAGCCAACAACATGAATGCTCCG
TCCCGGCGCGGAGCGGGTGGCGCGTATGGGCGGCTTGCACAAGTTCGGCG
GCTGGGAGGGTCCAATCCTAACAGACTCCGGCGGCTTCCAAGTCTGGTCG
CTTTCCAAACTCCCTAAAATGACGGAGGAGGGGGTGACCTTCCAAAGCCA
CTTGGACGGGTCGAAACATATGCTCTCGCCCGAGCGGTCAATCGAGATTC
AAGCTGACCTCCTGGGCGCGGATATCTCTATGCAGCTGGATGAGTGTACG
GACTTCCCCGTCAGCTACGACAAGGCCGCGCAGTCGATGGAGCTGTCTCT
GCGGTGGGGCAAACGCTCCCTTGCGGCCTTCGGAGACCGGGAGAACCAAA
CCTTATTCGCAATCGTGCAGGGATCAAATTTCCCCGAGCTCCGTAAGCTC
TCCGCCGAAGCGTCGATCAAAGAAGACACGGCTGGGGGCTATGGCGGCTT
TGCGATTGGCGGCCTGGCTGTTGGTGAAGGGCATGCCGCAATGTGTGAAA
CCTTGTCGGTCACAACGCCGCATCTGCCAAAGGACCGCCCACGTTATCTG
ATGGGGGTCGGAAAGCCGATTGATATTGTAGAGGCTGTCTACCGCGGCGT
GGATATGTTCGATTGTGTCATTCCAACCCGATCCGGACGGCATGGTCAAG
TTTGGACGGATACCGGGCCTTACAATATCAAACGCGCCGAATTTGCCGAG
GATCAAAACCCATTGGATCCCGAAATATCTTGTCCGGCGTCGCAAGATTA
CACGAAGGCTTATGTTCATCATTTGATACGGTCGAACGAGTTGCTGGGGG
CCATGATCCTGTCATGGCACAACATCGCATATTTCGAAGATTTGATGTCG
CGAATACGGGCTGCGATCGCTGCAGGGTCATTCGAAACCTTCATCACGGA
ATTTCGCGCGAACTGGTCGAAGCCAACAACATGA
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