mRNA_P-canaliculata_contig98.23894.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig98.23894.1 vs. uniprot
Match: D7FJS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJS0_ECTSI) HSP 1 Score: 389 bits (999), Expect = 1.350e-106 Identity = 522/1713 (30.47%), Postives = 692/1713 (40.40%), Query Frame = 1 Query: 1 PAGWLSTAISSGKLGVAADDID-DDDGQTGEDGRSLKMVTSSTQDRETEDSTRAPAST------LPPWAARWTPP-SPDPPPEVEEKSTVVSEAKPKPSGLDWIKSEMPYWLKEV----SSR---GGVSMHDTVASARNSDGAVLSGRGGETNVA-PPTVGAAAS----ESGVDCVVDSVVSEKTEARVREGREERYPSAMTAAATS--------GGWLTSGKLGVSIEKDSGDEVGTGGVCDSGYELSTARKGRKPKSDVKTSSSATIPTTTGPGGWLASGTLGVPVDDESERTAQDGDGCMRGSFMMSEETQTEEDIEEVAKKGTGSKLPPWAKPWTPPPEPDVTVDP-------VPPRDKDTKKQDIAVVVTPDWILASLGQGDDNAAAETATSEGLDSEGNGLDWLAKVVDPASSSVQGLPPAAAGSNTSDWLLHTVVDGGGGVGGAKLKKPNQP-----STSVAPDALSWMTKMKRRSSIDLEDPCVEALVVETKTKAEPGGWMQSGALGSPDSIEEEKALEEARAAS----------SHSRGRRESLAGGLPPWAPMQQQKKAPVLVDAAPATSXXXXXXXXXXXXXXAP-------AVATEASSRLRKAGAPSTHKDARQGGCSSEKQQAQQLALPDWLTIAAVSQCPCIFDNRDRLQENRDDCDAVADDREGGLDWLKAAITSDKKVAATPSAIVTVHESVDESRSTQAAMSIAVGDSVHGGGTKNVVRRRS-SLVTTEGWISMN-LGLPV----DDEYALNGKESDVRGTGMVSKTAKKRSPGIAANDDRGLVVQPAGWLSAAISTGKIGVAADDSDDDDGQTGEDGRSLNMVSSSTHWEDGETEDRTRAPAST-----FPPWAERWTPPSPDPP--PEIEEQPTVES-EAKPKPSG--LDWIKNEMSCTPADTSKGASAGDDKVVA---NGCSNTIGESSGLDWLKETNATSAPPTVGATVGGSGI-DRLVDAAASEKTEARVREGREDRNPSAMTAAATSGDWLTSGKLGVSIEKASGDDAGTGGVCDSGHGLSTGRKSKPGVKTSSSAIISTATGPGGWLASGTLGVPVDDESERSAQDGEEGMRGSFMVSEETQTEEDIEEIAKKGTGSKLPPWAKPWTPPSEPDATGDPVPLRDKDNKKQDIAVAVTPDWILASLGQSHDDAPAETATSGGLDSEGKGLDWLAKVLDPGSMLLPTAAGSNTFDWLLQTVVGGGGGAGEAK--------LKKKPNQPSTSVAPNPLSWMTKMKHRSSIDLEDPCTEALVVEAKTKAGRGSWMQSGTLGAPDSIEEEKALEEARAASSYPRPSNKACSSD---ATADRHPSLSDGAPAWTLKQLTETGAGESKEPWRGRRGSLAGGLPPWAPTQQQ-------EKAPVLVDVAPATSXXXXXXXXXXXXXXVPSVATELSSRLNHGGYVSPCVPEPLAGSVGKAGAPSTYYEDTRQGWCSSEKQQAQQLTLPDWLTVAAGGSSTKAEKRFPGIAANDDIEPVAQPAGWLSAAISTGKIGVAADDAAARGSGIDWLVDTAASEKTEARVREGREERNPYAMTAAATG-GWLTSGKLGVSTEKDRGHE----AGTGGVCGSGHELSTGRKPKSGIKMSSSATIPTTTGPGGWLA----SGTLGVPVDDESERSTQDVDGGMRSSFMVSGETQTEEYIEEVAKKGIG----SKLPPWAKPWTPP 4815
P GW+S SG LG A+D D+D GE R + + + + + E T+ A+ LPPWA + PP P+ P+ K+ + P+ G SE+P WL V SSR G + + +A D A G T A T GAAA A G+ +R P A AA GGWL+S KLGVS E+DS + D+G + K +K K + S S + G +++ ETQTE+DIE V ++G KLPPWAKP+ PPP+ DV D +PP ++T TPDWILASLG D + + + G G +WL++ + + P +N DWL P Q +V LSWM ++KR+SS+DL+D VE V + K KA PGGW+Q G LG+PD++ EE LE+ARAAS S S GRR SL+GG PPWAP +++ + D+ T+ XXXXXXXXX AVA EA + +K G+ K+ + S + + DWL AA + ++ + L E RD D A GL WL A S K AA T VD S A +AV S V+R S GW+S LGLP DD+ A GK S G+G V+K RG V ++G G++ R V+ T +D + E TR A PPWA+ + PP P P P+ + T+E E +P SG W+ ++ PAD + G ++ + G G + GL WL E ++ T AT + + D L DA + T+ R A +A G W++SGKLGVS G D G D G +K +P S +S A GP GWL+SG LGVP DES+ D + G M + ETQTEE+IEE K G KLP ++ D TPDWILASLG + A A A G S G DWL + G T GSN DWL Q A AK ++P + +PLSWMT MK RSS+DL D E + +AK K G W+Q G LGAPD++EE ALEEARAASS R S + AT R PSL G P W K T A S RGR QQ E+ D +P XXXXXXXXXXXXX VA G+P++ + + + LPDWLT AAGG S + R G + D + GWL+ + D ++ + L D A +E+T A + + G GWL++ + K R HE A + V S ++ T PGGWLA SG LG DD D + TQT++ + AKK + SK P KP PP
Sbjct: 580 PGGWMS----SGALGAPAEDESGDEDSGGGETDRGVGVTIETQTEEDIEAVTKGGATEKGNAPKLPPWAKPYVPPPKPEVVPDTPPKADSAPQGAPEKQG-----SEIPDWLAAVAGTSSSREDPSGAMIEEAGPTAGQEDSAGGGGLSWLTQAARSSTFGAAAPIDXXXXXXXXXXXXXXXXXXXAAKSTGQTKRKPHATATAAAKAAAVPAAPGGWLSSVKLGVSTEEDSDQD-------DAGKTAGRSTKSKKKKKQARGSVSVASXX------XXXXXXXXXXXPEXXXXXXXXXGGGDSQPVLVTMETQTEDDIEGVTERGNVPKLPPWAKPYVPPPKDDVAPDSTADSTAEIPPEKEETDAS-----ATPDWILASLGDQDADGFSGGVPASG----GGSNNWLSQAAEQEPGAGASDMPNTGDTNAPDWLQQAAAPNAKPKHRQAASMPQQRPGIARKAAVPASPLSWMKQVKRQSSMDLDDQTVETTVAQAKAKAAPGGWLQIGVLGAPDALAEENELEQARAASPLTSTGPESRSRSEGRRPSLSGGPPPWAPAKEEG---AVGDSGSTTTSTHDVXXXXXXXXXXXXXXXXPTAVAAEAETTEQKEGSEEAAKEKGEPATSG-------VRVSDWLAAAATTGTASGEESTNALGEERDQQDGEASGGSDGLSWLTQAADSHKPSAAASGIPSTA--GVDSSEGDAGADWLAVAKSSGQAKRSPAVKRPSVGAAAPGGWMSSGKLGLPAGDGSDDDQA--GKTS---GSGGVAKAKXXXKA-------RGSVSGTXXXXXXXXXXXXXXXXXXXXXXEEGSGGDNDRRGAAVTIETQTDD-DIEAATRGAAERGSTRKLPPWAKPYVPPDPIPEVVPDTAAELTIEKQELEPAGSGGVPSWLAA-VAGAPADEKHSDALGQERALEADEGGVGQASGGNDGLGWLTEA---ASKDTAAATPASTSVPDWLGDATSRGMTKHNKSSTAAKR---ASIKSAAPGGWMSSGKLGVSTGD-DGSDEDQAGKTDRGSAKPRKKKKQP-----SRGSVSAAGGPAGWLSSGALGVPAQDESDEDGGDSDGGR--PLMATTETQTEENIEEATKTANGPKLPXXXXXXXXXXXXXXXXXXXXXXXXXEQEHDTPA--TPDWILASLGPDAEGAAAAPAPGG---SPG---DWLVQENQAGGGPTGTGGGSNGPDWLQQATA-----APTAKPANRSRGAATQRPGGGRKAATQSPLSWMTSMKRRSSMDLNDQGVEEAIAQAKAKTIPGGWLQMGALGAPDAVEEANALEEARAASSLTRTSTNGKGTPGAAATDVRRPSLEQGLPPWAPKLATTALASSSSS--RGRXXXXXXXXXXXXXQHQQGGGSPSAEQLKARADESPXXXXXXXXXXXXXXXXADKKVAAGSDGSSRRRXXXXXXXXXXXXXXAAPGGSPTSRSRGQEEDELPVPESEQATPALPDWLTAAAGGGSAPKDTRGDG-ESTIDTDDDGGGLGWLTQXXXXXTTSKSQDRKGSQEAADTALDDEARTERTAAGSTDAACNDVSSEHSGGGEGLGWLSAAVVRRPQMKSRTHELQPTATSTNVVASKSRAQ--QRXXXXXXXXXXXXXXXXTAPGGWLALSVASGNLGGLSDDGESHLVGDGTNNGGDTGKEDTATQTDDVVIVEAKKSVSEQTTSKNP--TKPKLPP 2201
BLAST of mRNA_P-canaliculata_contig98.23894.1 vs. uniprot
Match: A0A6H5KKG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKG6_9PHAE) HSP 1 Score: 186 bits (472), Expect = 1.870e-44 Identity = 171/486 (35.19%), Postives = 216/486 (44.44%), Query Frame = 1 Query: 70 DDGQTGEDGRSLKMVTSSTQ-DRETEDSTRAPAST-----LPPWAARWTPPSPDPPPEVEEKSTVVSEAKPKPSGLDWIKSEMPYWLKEVSSRGGVSMHDTVASARNSDGAVLSGRGGETNVAPPTVGAAASESGVDCVVDSVVSEKTEARVREGREERYPSAMTAAATSGGWLTSGKLGVSIEKDSGDEVGTGGVCDSGYELSTARKGRKPKSDVKTSSS-ATIPTTTGPGGWLASGTLGVPVDDESERTAQDGDGCMRGSFMMSEETQTEEDIEEVAKKGTGSKLPPWAKPWTPPPEPDVTVDPVPPRDKDTKKQDIAVVVTPDWILASLGQGDDNAAAETATSEGLDSEGNGLDWLAKVVDPASSSVQGLPPAAAGSNTS-DWLLHTVVDGGGGVG----GAKLKKPNQPSTSVAPDALSWMTKMKRRSSIDLEDPCVEALVVETKTKAEPGGWMQSGALGSPDSIEEEKALEEARAASSHSR 1491
++G GE R V TQ D + E +TR A LPPWA + PP DP EV + S + K D + E E GGV + R+ G + T A P AS S D + + T+ R +R A +A GGW++SGKLG++ DS DE G T R KP+ K ++P GP GWL+SG LGVP ES+ D DG M + ETQTE++IE K G KLPPWAKPWTP P TPDWILASL + AAA A G+ DW + + G P G +T DWL G GA ++P + A LSWM+ MKRRSS+DL D VE + + K K PGGW+Q GALG+PD++EE ALEEARAASS +R
Sbjct: 402 EEGSGGEKDRRGAAVNIETQTDNDIEAATRGAAEKGDTRKLPPWAKPYVPP--DPTQEVVPDTAAESTIE-KQKNSDALGQERALEADE----GGVGQ---ASGGRDGLGWLTEAANKNTAAATP-----ASSSAPDWLAGAKSRGTTKHNKRSTAAKR---ASIGSAAPGGWMSSGKLGLATGDDSSDEDQAG---------KTDRGSAKPRMKKKKQQRRGSVPAAGGPAGWLSSGALGVPAQYESDENGGDSDGGR--PLMATTETQTEDNIEAATKTANGPKLPPWAKPWTPXPPXXXXXXXX--XXXXXXXXXXXXPGTPDWILASLDPDTEGAAAAPAPG------GSPGDWHVQ-----ENQAGGGPAGTGGGSTGPDWLQQATAASTGKPANRWRGAATQRPGGGRKAAAQSPLSWMSSMKRRSSMDLNDQGVEEAIAQAKAKTIPGGWLQIGALGAPDAVEEANALEEARAASSLTR 845
BLAST of mRNA_P-canaliculata_contig98.23894.1 vs. uniprot
Match: A0A6H5KVL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVL2_9PHAE) HSP 1 Score: 154 bits (388), Expect = 6.920e-34 Identity = 119/343 (34.69%), Postives = 161/343 (46.94%), Query Frame = 1 Query: 514 GREERYPSAMTAAATS--------GGWLTSGKLGVSIEKDSGDEVGTGGVCDSGYELSTARKGRKPKSDVKTSSSATIPTTTGPGGWLASGTLGVPVDDESERTAQDGDGCMRGSFMMSEETQTEEDIEEVAKKGTGSKLPPWAKPWTPPPEPDV----TVDPVPPRDKDTKKQDIAVVVTPDWILASLGQGDDNAAAETATSEGLDSEGNGLDWLAKVVDPASSSVQGLPPAAAGSNTSDWLLHTVVDGGGGVGGAKLKKPNQPS-----TSVAPDALSWMTKMKRRSSIDLEDPCVEALVVETKTKAEPGGWMQSGALGSPDSIEEEKALEEARAASSHSR 1491
G+ +R P A AA GGWL+SGKLGVS E+++ + D+G TA + PK K + A +P GDG +++ ETQTE+DIE V ++G KLPPWAKP+ PPP+ DV T D K +K++ PDWILA+LG D + + G G +WL+ + + P +N DWL P Q S +V LSWM ++KRRSS+DL+DP VE V + K KA PGGW+Q GALG+PD++ EE LE+ARAAS +R
Sbjct: 761 GQTKRKPHATATAAAKAAAVPAAPGGWLSSGKLGVSTEEENDQD-------DAGK---TAGRSTTPKKKKKQAIGA-VPVAXXXXXXXXXXXXXXXXXXXXXXXXGGGDGQ---PILVTMETQTEDDIEGVTERGNVPKLPPWAKPYVPPPKDDVVPESTADSX--XXKTPEKEETDASAAPDWILAALGDQDADGFRGGVPASG----GGSKNWLSHAAEQEPGAGASDMPNTGDTNAPDWLQQAAAPSAKPKDRQAASIPQQRSGIARKAAVPASPLSWMKQVKRRSSMDLDDPTVETTVAQAKAKAAPGGWLQIGALGAPDALAEENELEQARAASPRTR 1083 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98.23894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig98.23894.1 >prot_P-canaliculata_contig98.23894.1 ID=prot_P-canaliculata_contig98.23894.1|Name=mRNA_P-canaliculata_contig98.23894.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=1605bp PAGWLSTAISSGKLGVAADDIDDDDGQTGEDGRSLKMVTSSTQDRETEDSback to top mRNA from alignment at P-canaliculata_contig98:37335..49566- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig98.23894.1 ID=mRNA_P-canaliculata_contig98.23894.1|Name=mRNA_P-canaliculata_contig98.23894.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=12232bp|location=Sequence derived from alignment at P-canaliculata_contig98:37335..49566- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig98:37335..49566- >mRNA_P-canaliculata_contig98.23894.1 ID=mRNA_P-canaliculata_contig98.23894.1|Name=mRNA_P-canaliculata_contig98.23894.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=9630bp|location=Sequence derived from alignment at P-canaliculata_contig98:37335..49566- (Pelvetia canaliculata dioecious)back to top |