mRNA_P-canaliculata_contig9798.23893.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9798.23893.1
Unique NamemRNA_P-canaliculata_contig9798.23893.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig9798.23893.1 vs. uniprot
Match: D7FNE6_ECTSI (NADH-cytochrome b5 reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNE6_ECTSI)

HSP 1 Score: 345 bits (884), Expect = 3.640e-117
Identity = 171/235 (72.77%), Postives = 198/235 (84.26%), Query Frame = 1
Query:    1 SLPILVVXXXXXXXEQRALDPEAYIPFTLERREVLSHDTRRFRFALQTPSHILGLPIGQHVSMKYVDEKGKIVTRSYTPTSSDMNVGHVDFVIKVYFPNVEPRFPEGGKMSMHLESLKLGDKVEMRGPKGSLTYLGKGVFRIKRREDRKVRKLGMMAGGTGITPMLQVINAIMREGA-GL-ELSLIFANKSEDDILLRDMIEKLAAENTSFKFHYTLDKAPQGWKHSQGFITTEV 699
            ++  LV+       ++ AL PE Y PF L+ +  LSHDTR FRFALQ+P H+LGLPIGQHVSMK+VD  GKIVTRSYTPTSSD+N+GHVDFVIKVY PN  P+FP+GGKMSMHLE LK+GD V+MRGPKG+LTYLG G F I+RR+DR+VRKLGMMAGGTGITPMLQVI+AIMREG+ GL E+SLIFANKSEDDILLRDMIEKLAA N +FKFHYTLD  P+GW HSQGFI+ E+
Sbjct:   15 AVTFLVIIVSSAKQKKIALQPEVYAPFRLQEKVELSHDTRMFRFALQSPKHVLGLPIGQHVSMKFVDADGKIVTRSYTPTSSDINLGHVDFVIKVYRPNEHPKFPDGGKMSMHLERLKIGDTVDMRGPKGNLTYLGTGNFSIRRRDDRQVRKLGMMAGGTGITPMLQVISAIMREGSTGLVEMSLIFANKSEDDILLRDMIEKLAASNPNFKFHYTLDTVPEGWAHSQGFISKEM 249          
BLAST of mRNA_P-canaliculata_contig9798.23893.1 vs. uniprot
Match: A0A835ZPK9_9STRA (NADH-cytochrome b5 reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPK9_9STRA)

HSP 1 Score: 291 bits (744), Expect = 1.180e-95
Identity = 133/216 (61.57%), Postives = 175/216 (81.02%), Query Frame = 1
Query:   52 ALDPEAYIPFTLERREVLSHDTRRFRFALQTPSHILGLPIGQHVSMKYVDEKGKIVTRSYTPTSSDMNVGHVDFVIKVYFPNVEPRFPEGGKMSMHLESLKLGDKVEMRGPKGSLTYLGKGVFRIKRREDRKVRKLGMMAGGTGITPMLQVINAIMREGAGLELSLIFANKSEDDILLRDMIEKLAAENTSFKFHYTLDKAPQGWKHSQGFITTEV 699
            AL    Y PF L+ ++ +S DTR FRFALQ+  H+LGLPIGQH+S+K++D  GK+VTRSYTPTSSD  VG+VDFVIKVYFPN  P+FP+GGKMS HL  LK+GD ++M GPKGSL Y GKG+F I++REDR+V+++GM+AGGTGITPMLQ++NAI +E + +ELSLIFAN+SE DILLRDMIE    ++ +F++H+T+D+  +GW  S GFIT ++
Sbjct:   51 ALSKSEYRPFVLQEKQNISRDTRLFRFALQSAKHVLGLPIGQHISLKFIDGAGKMVTRSYTPTSSDDEVGYVDFVIKVYFPNEHPKFPDGGKMSYHLHDLKVGDTIDMMGPKGSLEYKGKGLFSIRKREDRQVKRIGMLAGGTGITPMLQIMNAIRKENSNIELSLIFANQSEQDILLRDMIEAFPMKHANFRYHFTVDRPSEGWTGSVGFITADM 266          
BLAST of mRNA_P-canaliculata_contig9798.23893.1 vs. uniprot
Match: A0A6V1RBP2_HETAK (NADH-cytochrome b5 reductase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RBP2_HETAK)

HSP 1 Score: 268 bits (686), Expect = 1.110e-86
Identity = 130/222 (58.56%), Postives = 171/222 (77.03%), Query Frame = 1
Query:   43 EQRALDPEAYIPFTLERREVLSHDTRRFRFALQTPSHILGLPIGQHVSMKYVDEKGKIVTRSYTPTSSDMNVGHVDFVIKVYFPNVEPRFPEGGKMSMHLESLKLGDKVEMRGPKGSLTYLGKGVFRIKRRED---RKVRKLGMMAGGTGITPMLQVINAIMREGAGLELSLIFANKSEDDILLRDMIEKLAAENTSFKFHYTLDKAPQGWKHSQGFITTEV 699
            ++ ALDPE +IP  L  +  L+HDTRRF FALQTP  +LGLPIGQH+S ++ D +GK+  RSYTPT+ +  +G V+FVIKVYF N  P+FPEGGKMS HLESLK+GD +EMRGPKG L Y G G F +K+  D   + V K+GMMAGGTGITPMLQVI AI++EG+G+E+SL+FAN+SEDDILLR  +++LA ++ +FK  YT+D+ P+ W  S+GFI  ++
Sbjct:   57 KKNALDPEKFIPLKLIDKVELTHDTRRFVFALQTPETVLGLPIGQHISFRFKDGEGKVCQRSYTPTTGNDTLGRVEFVIKVYFANKHPKFPEGGKMSQHLESLKIGDTLEMRGPKGHLDYKGSGNFTLKKLTDVTEKTVTKVGMMAGGTGITPMLQVIKAILKEGSGIEMSLLFANQSEDDILLRADLDELARKHANFKVWYTVDRPPKHWTFSEGFINKKM 278          
BLAST of mRNA_P-canaliculata_contig9798.23893.1 vs. uniprot
Match: A0A7S2V3I9_9STRA (NADH-cytochrome b5 reductase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3I9_9STRA)

HSP 1 Score: 268 bits (684), Expect = 1.730e-86
Identity = 131/219 (59.82%), Postives = 165/219 (75.34%), Query Frame = 1
Query:   52 ALDPEAYIPFTLERREVLSHDTRRFRFALQTPSHILGLPIGQHVSMKYVDEKGKIVTRSYTPTSSDMNVGHVDFVIKVYFPNVEPRFPEGGKMSMHLESLKLGDKVEMRGPKGSLTYLGKGVFRIKRR---EDRKVRKLGMMAGGTGITPMLQVINAIMREGAGLELSLIFANKSEDDILLRDMIEKLAAENTSFKFHYTLDKAPQGWKHSQGFITTEV 699
            ALDPE YI F L  +E LSHDTRRFRF LQ+P HILGLPIGQH+S K+  ++GKIVTRSYTPTSSD   G+VDFVIKVYF N  P+FP GG MS HLESL +GD +EMRGPKG LTY G G   I +R   E R  R++GM+AGGTGITPMLQV++AI++E + +++ L+FAN++ DDIL+R  +E +  +NT+ +  YTLD+ P GW  S GF+  E+
Sbjct:   53 ALDPEKYISFPLIEKEELSHDTRRFRFGLQSPDHILGLPIGQHISFKFQTKEGKIVTRSYTPTSSDDEKGYVDFVIKVYFANKHPKFPAGGLMSQHLESLNIGDTIEMRGPKGHLTYKGHGKMAIAKRGEVETRYARQIGMIAGGTGITPMLQVMSAIVKEKSRVDIWLLFANQTADDILVRSELEGMLKDNTNIRLWYTLDRPPAGWPFSTGFVDAEM 271          
BLAST of mRNA_P-canaliculata_contig9798.23893.1 vs. uniprot
Match: W7U134_9STRA (NADH-cytochrome b5 reductase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U134_9STRA)

HSP 1 Score: 263 bits (672), Expect = 7.660e-84
Identity = 127/221 (57.47%), Postives = 172/221 (77.83%), Query Frame = 1
Query:   52 ALDPEAYIPFTLERREVLSHDTRRFRFALQTPSHILGLPIGQHVSMKYVDEKGKIVTRSYTPTSSDMNVGHVDFVIKVYFPNVEPRFPEGGKMSMHLESLKLGDKVEMRGPKGSLTYLGKGVFRIKRR---EDRKVRKLGMMAGGTGITPMLQVINAIMRE-GAGLELSLIFANKSEDDILLRDMIEKLAAENTS-FKFHYTLDKAPQGWKHSQGFITTEV 699
            AL+P+ Y+PF L  RE L+H+TRRFRFALQ+P H+LGLP+GQHVS+KY D +GK VTRSYTP SSD ++G+VDF IKVYF N  P+FPEGGKMS HLE+L+LGD + MRGPKGSLTY G+G F +K R     R V K+GM+AGGTGITPMLQ+I  ++++ G   ++ L++AN++E+DILL++ +E++A  +   FK +YTLD+ P  WK   GF+T+++
Sbjct:  113 ALNPDNYLPFKLVEREELTHNTRRFRFALQSPQHVLGLPVGQHVSLKYTDSEGKDVTRSYTPISSDDDLGYVDFAIKVYFANTHPKFPEGGKMSQHLEALQLGDSILMRGPKGSLTYQGRGHFALKSRGALSSRTVSKVGMIAGGTGITPMLQIIREMLKDKGDKTKVWLLYANQTENDILLQEELEEIAQHHPDRFKLYYTLDRPPTKWKQGIGFVTSDM 333          
BLAST of mRNA_P-canaliculata_contig9798.23893.1 vs. uniprot
Match: A0A024TWH3_9STRA (NADH-cytochrome b5 reductase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TWH3_9STRA)

HSP 1 Score: 253 bits (646), Expect = 8.910e-81
Identity = 123/222 (55.41%), Postives = 162/222 (72.97%), Query Frame = 1
Query:   55 LDPEAYIPFTLERREVLSHDTRRFRFALQTPSHILGLPIGQHVSMKYVDEKGKIVTRSYTPTSSDMNVGHVDFVIKVYFPNVEPRFPEGGKMSMHLESLKLGDKVEMRGPKGSLTYLGKGVFRIKRR------EDRKVRKLGMMAGGTGITPMLQVIN-AIMREGAGLELSLIFANKSEDDILLRDMIEKLAAENTSFKFHYTLDKAPQGWKHSQGFITTEV 699
            L P + +   L  +E+LSHDTRRFRFAL T  H+LGLP+GQH+S++Y D +GK+V RSYTP SSD  VG+VD V+KVYF NV P+FP+GGKMS +LESL+LGD +E+ GPKG LTY G GVF +K R      E RK +K+GM+AGGTGITPMLQVI  A+       E S++FAN++E+DIL RD ++++A E+ + K  YT+D+A   WK S GF+T  +
Sbjct:   47 LKPNSTVMLKLVEKEILSHDTRRFRFALPTEHHVLGLPVGQHISLRYTDSEGKLVMRSYTPVSSDDAVGYVDLVVKVYFKNVHPKFPDGGKMSQYLESLQLGDAIEVSGPKGKLTYKGLGVFELKHRVNDTEVEVRKAKKIGMIAGGTGITPMLQVIRYALKNPNEKTEFSILFANQTENDILCRDELDQMAKEHPNVKVWYTVDRATDSWKFSTGFVTKSM 268          
BLAST of mRNA_P-canaliculata_contig9798.23893.1 vs. uniprot
Match: C1FJ74_MICCC (NADH-cytochrome b5 reductase n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FJ74_MICCC)

HSP 1 Score: 253 bits (646), Expect = 1.290e-80
Identity = 126/227 (55.51%), Postives = 164/227 (72.25%), Query Frame = 1
Query:   46 QRALDPEAYIPFTLERREVLSHDTRRFRFALQTPSHILGLPIGQHVSMKYVDEKGKIVTRSYTPTSSDMNVGHVDFVIKVYFPNVEPRFPEGGKMSMHLESLKLGDKVEMRGPKGSLTYLGKGVFRIKRR-------EDRKVRKLGMMAGGTGITPMLQVINAIMRE-GAGLELSLIFANKSEDDILLRDMIEKLAAENTSFKFHYTLDKAP-QGWKHSQGFITTEV 699
            ++ALDP   +   L +R  LSHDT  FRF L TP HILGLPIGQH+++ Y D+ GK   R YTPTSSD++ GHVDFVIKVYFPN   RFPEGGK+S H+ SLK+GD ++  GPKG   Y GKG F IKR        E RK +K+GM+AGGTGITPMLQV+ A+ R+ G   ++SLIFAN++E+DILLRD ++K   ++ +FK HYT+D+ P +GW++  GF+T E+
Sbjct:   56 KKALDPSKKVALKLVKRTELSHDTHMFRFGLPTPEHILGLPIGQHIALSYTDKDGKEQGRPYTPTSSDVDKGHVDFVIKVYFPN--ERFPEGGKVSQHMHSLKIGDTLDFSGPKGRYEYRGKGTFAIKRLKSQGGGFEIRKAKKIGMIAGGTGITPMLQVMRAVFRDKGDKTDMSLIFANQTEEDILLRDELDKCERDHDNFKLHYTVDRPPAKGWRYDTGFVTAEM 280          
BLAST of mRNA_P-canaliculata_contig9798.23893.1 vs. uniprot
Match: A0A0P1AJY9_PLAHL (NADH-cytochrome b5 reductase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AJY9_PLAHL)

HSP 1 Score: 253 bits (645), Expect = 1.570e-80
Identity = 124/222 (55.86%), Postives = 164/222 (73.87%), Query Frame = 1
Query:   55 LDPEAYIPFTLERREVLSHDTRRFRFALQTPSHILGLPIGQHVSMKYVDEKGKIVTRSYTPTSSDMNVGHVDFVIKVYFPNVEPRFPEGGKMSMHLESLKLGDKVEMRGPKGSLTYLGKGVFRIKRR------EDRKVRKLGMMAGGTGITPMLQVINAIMREGAG-LELSLIFANKSEDDILLRDMIEKLAAENTSFKFHYTLDKAPQGWKHSQGFITTEV 699
            L P  ++P  L  ++VLSHDTRRFRFAL +  H+LGLP+GQH+S++Y D++GK+V RSYTP SSD   G+VD VIKVYF NV P+FPEGGKMS HLESL +GD +E+ GPKG L+Y+GKG   IK R      E RK  ++GM+AGGTGITPMLQV+   +++     E  L+FAN++E+DIL RD IE +AA + +FKF YT+DKA  GW +S GF++ ++
Sbjct:   56 LPPTVHLP--LIEKQVLSHDTRRFRFALPSNQHVLGLPVGQHISLRYTDDEGKVVMRSYTPVSSDDTRGYVDLVIKVYFKNVHPKFPEGGKMSQHLESLAIGDTIEVSGPKGKLSYMGKGEIHIKHRVRDVVPEIRKAAQIGMIAGGTGITPMLQVVRRALQDPEDKTEFYLLFANQTENDILCRDEIEAMAATHPNFKFWYTVDKASDGWPYSTGFVSADM 275          
BLAST of mRNA_P-canaliculata_contig9798.23893.1 vs. uniprot
Match: A0A485L3J1_9STRA (NADH-cytochrome b5 reductase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L3J1_9STRA)

HSP 1 Score: 252 bits (644), Expect = 1.580e-80
Identity = 122/222 (54.95%), Postives = 162/222 (72.97%), Query Frame = 1
Query:   55 LDPEAYIPFTLERREVLSHDTRRFRFALQTPSHILGLPIGQHVSMKYVDEKGKIVTRSYTPTSSDMNVGHVDFVIKVYFPNVEPRFPEGGKMSMHLESLKLGDKVEMRGPKGSLTYLGKGVFRIKRR------EDRKVRKLGMMAGGTGITPMLQVIN-AIMREGAGLELSLIFANKSEDDILLRDMIEKLAAENTSFKFHYTLDKAPQGWKHSQGFITTEV 699
            L P+  +   L  +E LSHDTRRFRFAL +  H+LGLP+GQH+S+++ DE+GK+V RSYTP SSD  +G+VD V+K+YF NV P+FP+GGKMS HLESLKLGD +E+ GPKG LTY G GVF IK R      E RK +K+GM+AGGTGITPMLQVI  A+       E S++FAN++EDDIL R  +E++A ++ + K  YT+D+  + WK+S GFI  ++
Sbjct:   43 LKPDETVMLKLIEKETLSHDTRRFRFALPSEKHVLGLPVGQHISLRFTDEEGKLVMRSYTPVSSDDVLGYVDLVVKIYFKNVHPKFPDGGKMSQHLESLKLGDAIEVSGPKGKLTYKGLGVFTIKHRVKDTTVETRKAKKIGMVAGGTGITPMLQVIRYALQNPKETTEFSILFANQTEDDILCRAELEQMAKDHPNVKVWYTIDRPTESWKYSSGFINKQM 264          
BLAST of mRNA_P-canaliculata_contig9798.23893.1 vs. uniprot
Match: D0NRY2_PHYIT (NADH-cytochrome b5 reductase n=18 Tax=Phytophthora TaxID=4783 RepID=D0NRY2_PHYIT)

HSP 1 Score: 251 bits (640), Expect = 7.910e-80
Identity = 125/222 (56.31%), Postives = 162/222 (72.97%), Query Frame = 1
Query:   55 LDPEAYIPFTLERREVLSHDTRRFRFALQTPSHILGLPIGQHVSMKYVDEKGKIVTRSYTPTSSDMNVGHVDFVIKVYFPNVEPRFPEGGKMSMHLESLKLGDKVEMRGPKGSLTYLGKGVFRIKRR------EDRKVRKLGMMAGGTGITPMLQVINAIMREGAG-LELSLIFANKSEDDILLRDMIEKLAAENTSFKFHYTLDKAPQGWKHSQGFITTEV 699
            L P  ++P  L  +  LSHDTRRFRFAL +P HILGLP+GQH+S+++ D +GK+V RSYTP SSD   G+VD VIKVYF NV P+FP+GGKMS HLESL +GD +E+ GPKG L+Y+GKG   I+ R      E RK  K+GM+AGGTGITPMLQVI   +++     E  L+FAN++E DIL R+ IE +AA +T+ KF YT+DKA  GWK+S GF+T ++
Sbjct:   52 LPPTVHLP--LVEKHSLSHDTRRFRFALPSPQHILGLPVGQHISLRFKDNEGKLVMRSYTPVSSDDTKGYVDLVIKVYFKNVHPKFPDGGKMSQHLESLAVGDTIEVSGPKGKLSYMGKGEIHIRHRVRDVVPEVRKATKIGMIAGGTGITPMLQVIRRALQDPEDKTEFYLLFANQTEADILCREEIEGMAANHTNVKFWYTVDKATDGWKYSTGFVTADM 271          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9798.23893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNE6_ECTSI3.640e-11772.77NADH-cytochrome b5 reductase n=2 Tax=Ectocarpus Ta... [more]
A0A835ZPK9_9STRA1.180e-9561.57NADH-cytochrome b5 reductase n=1 Tax=Tribonema min... [more]
A0A6V1RBP2_HETAK1.110e-8658.56NADH-cytochrome b5 reductase n=1 Tax=Heterosigma a... [more]
A0A7S2V3I9_9STRA1.730e-8659.82NADH-cytochrome b5 reductase n=1 Tax=Fibrocapsa ja... [more]
W7U134_9STRA7.660e-8457.47NADH-cytochrome b5 reductase n=3 Tax=Monodopsidace... [more]
A0A024TWH3_9STRA8.910e-8155.41NADH-cytochrome b5 reductase n=2 Tax=Aphanomyces i... [more]
C1FJ74_MICCC1.290e-8055.51NADH-cytochrome b5 reductase n=1 Tax=Micromonas co... [more]
A0A0P1AJY9_PLAHL1.570e-8055.86NADH-cytochrome b5 reductase n=1 Tax=Plasmopara ha... [more]
A0A485L3J1_9STRA1.580e-8054.95NADH-cytochrome b5 reductase n=1 Tax=Aphanomyces s... [more]
D0NRY2_PHYIT7.910e-8056.31NADH-cytochrome b5 reductase n=18 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9798contigP-canaliculata_contig9798:7906..11799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score345.5
Seed ortholog evalue1.9e-92
Seed eggNOG ortholog2880.D7FNE6
KEGG koko:K00326
KEGG ReactionR00100
KEGG Pathwayko00520,map00520
EggNOG free text desc.cytochrome-b5 reductase activity, acting on NAD(P)H
EggNOG OGsCOG0543@1,KOG0534@2759
EC1.6.2.2
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRiboflavin synthase-like beta-barrel
Ec32 orthologEc-22_001440.1
Exons5
Model size699
Cds size699
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9798.23893.1prot_P-canaliculata_contig9798.23893.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9798 7906..11799 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817341.7799237-CDS-P-canaliculata_contig9798:7905..81601622817341.7799237-CDS-P-canaliculata_contig9798:7905..8160Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9798 7906..8160 +
1693495234.6000416-CDS-P-canaliculata_contig9798:7905..81601693495234.6000416-CDS-P-canaliculata_contig9798:7905..8160Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9798 7906..8160 +
1622817341.7971094-CDS-P-canaliculata_contig9798:8868..89671622817341.7971094-CDS-P-canaliculata_contig9798:8868..8967Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9798 8869..8967 +
1693495234.6107411-CDS-P-canaliculata_contig9798:8868..89671693495234.6107411-CDS-P-canaliculata_contig9798:8868..8967Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9798 8869..8967 +
1622817341.8099408-CDS-P-canaliculata_contig9798:9396..94891622817341.8099408-CDS-P-canaliculata_contig9798:9396..9489Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9798 9397..9489 +
1693495234.6197436-CDS-P-canaliculata_contig9798:9396..94891693495234.6197436-CDS-P-canaliculata_contig9798:9396..9489Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9798 9397..9489 +
1622817341.8241017-CDS-P-canaliculata_contig9798:10860..110191622817341.8241017-CDS-P-canaliculata_contig9798:10860..11019Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9798 10861..11019 +
1693495234.6289577-CDS-P-canaliculata_contig9798:10860..110191693495234.6289577-CDS-P-canaliculata_contig9798:10860..11019Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9798 10861..11019 +
1622817341.8387156-CDS-P-canaliculata_contig9798:11706..117991622817341.8387156-CDS-P-canaliculata_contig9798:11706..11799Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9798 11707..11799 +
1693495234.639035-CDS-P-canaliculata_contig9798:11706..117991693495234.639035-CDS-P-canaliculata_contig9798:11706..11799Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9798 11707..11799 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9798.23893.1

>prot_P-canaliculata_contig9798.23893.1 ID=prot_P-canaliculata_contig9798.23893.1|Name=mRNA_P-canaliculata_contig9798.23893.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=233bp
SLPILVVVGGGGGGEQRALDPEAYIPFTLERREVLSHDTRRFRFALQTPS
HILGLPIGQHVSMKYVDEKGKIVTRSYTPTSSDMNVGHVDFVIKVYFPNV
EPRFPEGGKMSMHLESLKLGDKVEMRGPKGSLTYLGKGVFRIKRREDRKV
RKLGMMAGGTGITPMLQVINAIMREGAGLELSLIFANKSEDDILLRDMIE
KLAAENTSFKFHYTLDKAPQGWKHSQGFITTEV
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mRNA from alignment at P-canaliculata_contig9798:7906..11799+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9798.23893.1 ID=mRNA_P-canaliculata_contig9798.23893.1|Name=mRNA_P-canaliculata_contig9798.23893.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3894bp|location=Sequence derived from alignment at P-canaliculata_contig9798:7906..11799+ (Pelvetia canaliculata dioecious)
TCGCTCCCAATCCTGGTCGTTGTTGGGGGGGGTGGGGGGGGGGAACAGAG GGCGCTGGACCCCGAGGCGTACATCCCGTTTACCCTGGAGAGGCGAGAGG TCCTGTCGCACGACACGAGGAGGTTCCGCTTCGCTCTACAGACGCCCTCT CACATCCTCGGGCTCCCGATCGGCCAACACGTGTCCATGAAGTACGTGGA CGAGAAGGGCAAGATCGTCACGAGGTCCTACACGCCAACCAGCTCCGACA TGAACGTGAGATGGAGCTGGGTATATTATTACAATTACTATTACTATTTC TATCACTAAAAGTACCCTATCTGGAAATATTCGGATGTGTTATTTAATAG TATGGATATGTTTTGTGGGATTCAAGAATCAGACGGGCGGGATTTCGAGT AGACGGGATGTGTTACGAGGAAGGCAGAAGGGTGTTGGTAGATATTTCTT GGGCTTTTTTGGGGGGGGGGGGAGGGGGGCAGAGAATGAGCATCAAATGT TTTGACCCTTAATTACTGCTGTTCCGTGCGATTTCGATGGAGAATGAAAG GTTTTACCTACAAATGTTTGAGATTCCTATCGATAATGCTTCTTGTTATA TAAAGGTTTTATGAGGCTGTACGGGCTGGAAGAGGGATCTTAGGTCGAAC CCAAGATTCAGGACAAGAAACTGTGTTGCGTCGCTACACACTTCATGGTC ACCCTGAAACGTTTTGTCCTCGACCGGTATAGTCTACCCCAATGCTCACC ACCGTCGGAGCACGTGTCCCCTTTCGATGCACGAAATAAATATAGGTTCG CAAGGGCGAGTACTTTCAGTAATAGCTACACCGTCTGTATGCAGAGTGTA CCCTAAAGTGTACCCTAAATTATACCTTGACGTGTACCCTGGTTGGACCA GTAGTGTACCCGCAAGTGTACCTTTTTTTAGTTGGCCCTCTTGCGGTGGC CGTGCTCATTCAGGTCGGACACGTTGACTTCGTGATCAAGGTGTACTTTC CCAACGTGGAGCCAAGGTTTCCGGAGGGCGGAAAGATGTCCATGCACCTG GAGAGCTTGAAGGTACTCTGTAAGAAAGGGTGTACCTGAACGGTCTTGAC AACAGCAATCCCGAAAAAAATTACTGTCAAGGGTTGGTCCGAAAAGAGAT GAACGCTTCCAGAAAACTTGCCGCCTATACGAGTATTCAGCTCCCGGGTA GCGTTGTTGTTGCGGTAGCGTGGGTGTGCGTGTCGACAAGCTCGATCTTG GCGCCTTCCAAAACGTTTTTGTTTTGGCCGTGCAACACGTACTCGTTTTT CTTTTTTCCATGTTTAGGGATGAAAGACCCGATTTCTTCTGATGTGTATT ATTTGCAAGAACCACCCCTCCCCCGCAGCACGCTAGCAGTGTCGTCAACT TACCCAGCCTCGATGCCTCGCGTTTTGCCACGCCGCTCTTGTTCGTCTGT CAATGCACACCTTTTTTGTGTCTAAATATTTGCAACAAAAGCTGGGCGAC AAGGTGGAGATGCGGGGGCCGAAGGGAAGCCTGACGTACCTGGGGAAGGG GGTGTTCCGGATAAAGCGCAGGGAAGATCGAAAGGTGTGTGTATGTTTTT TGTTATCAGAGGGAGATCAGAGACAAATCAGACCAATCAATGCTCTCGAC TAATCGATCGTAGGCCAATCAGTGCTGGAAAAGCGATACGTCGTGATCAG TGCTGGTCAATACGTGAATGACGGACCGAATCAAGATGACGGACCGGAAT GTTGTTGAATGAACCAATCGTTAACGATTGGTTGAATTGTTTCGTAGTGG AGAGGGTAACCAATGATGGAAACAATCGGTTTTGGACCAACGTCTAGACC AATCAATGATGAACCTATCAATGACACTCGTAGCCCCATCAATTACGACC AATCAATGGCAGGCCAATCAATGGTGTGTGTGTGTTTGTGGTCGTCACGT TCAGCAGAGTAAGGATCAACCGAGGAAGGTCGCCAATCCTCCTTGTGCTC AGTTGGACAGGGAAAACGATTATTGTGCCCTGTCCCCGGTCGCGGCCGAG GATGTGGTCGCGCGAGAAAGGTCCGCCTGTCCCGTCCCACGCCAGCCCGT CTATTCTCCACATCTTACTCACGAGCTGAACAGTATCAACCAATGGTCAT ATATCAATCATAAACTATTCAGTTATGCACAAACCAATCAATGATACACC AATCAGGAATATTCCAATCAAAGATAAACCATCAATGATGGACCATCCCC GTCGTCTCATGTAAACAACCCCGATGTAGGTCGGTCGGACGGTCAAAAAC AAGCCTTTTCTGATGTGCGCTGCAAACTTTTACTGCCCCGAATCTTTTTT TTTAGCCAGAGCCGTCTAAGAGAAAATTTCCCACGATAATCCCATCCCAC ATTCTACAATGTTTTCAGTGCATTCAAAATGCATAACATTTCCCGGGGAC AGGAATTCTCAATTCCCTCCCCACTCTCCACAACGAAACCACTTCGATAC CCGGTTGAATATTATTCCAAACGCGAACACCCCTTCCCTCCTCGCCCCAT CGACCCCCCCCCCCACACCAACAACAAAAAACCACCAAAAACCCCACAAT ANNNNNNNNNNAACCCCTTTGAAACCCTGTTTAAAATAAACCCAAACCCA ACCCCCCCTCCCCCCCCCGCCCCCACCCCCCCCCCCCAAAAAAAAAAAAA AGCGACTGAGAGAAATTGGTTACCACTATACTAATGATATTAACAGTACA GCAGTGTACTTGACGAAACACATTTATTCGTGTAGGAGGTTTTTCATAAC CCCCTTTTTCCCCAAGGAAAAACTCCCTTACACTCAAGCTATATATTTAC TTGTCAAGTACTTCGCAGGAGTACACAAGATGCATATGCTGTACTACCAG TACATTGAAATGACCCCTCCCCCTAAAATAACAACAAAATCAAACACACG GGCAGGTGCGCAAGCTGGGCATGATGGCCGGCGGGACGGGCATTACCCCC ATGCTTCAGGTGATCAACGCCATCATGCGGGAAGGAGCCGGGCTGGAGTT GAGCCTCATCTTCGCCAACAAGTCGGAGGATGACATCTTGCTCCGCGACA TGATCGAGAAGTTGGTAGGAATAGGTGCTCGGAGTCAACGGTCAACGCCC CCTCCCCCGCCCAACCCGCTCTACCAAATTTAGACGATCTTCGTATTGAT CAATCTATAACATCTCGGGGCACGTGAGAACGCCCCGGGGCGATGCCTTG GTAACGAATTCCTAAAAACGCCCCTCCCCCCCCACCTGGGCGCTGACTCT GTGCTATACTGTTAAAGTGGATGGGGGTTGGGAGTTTGGTTTTGCATTGT TTTTGATATTTCTATATCGGTACCAGGCGTGTGTGCGTGTGTGTATTTAG AAGTTGCACGTAATCGCGCAATCTGGCCCTGTCCTACTAGCCATTCTATG CCACCTGAAGTTCTCCTTCCCTAAGGGATATTAAGGGATCAATGCTACTT GTTACGGTGTGGGTGTGTATGTGTGTGCTGTGCTCTATCCCGATGTGGAC GTTGTATGTTTTCGTCAAGATGCGATGTCCGCCTACATGGAAAACGCGGC TTTTTTTCTTCTTCTGTTGTCATGTATGAAAATGACTATAGTACTATTAG AGTACTATGATAGGGTAGTGCAGGAGAGTTGTTCCCGTCCCTGATCATCT TTTGTCTAGCCGAGCGCGTCAGCCTAACCTGTACCATATCTACACTACCC CCCCTGGCGAAAACGAAATACGGTGATATCCTCTTGACCCCTGTCTCGCA GGCCGCCGAGAACACGAGCTTCAAGTTTCACTACACGCTCGACAAGGCTC CCCAGGGCTGGAAGCACAGCCAGGGGTTCATCACAACCGAGGTA
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Coding sequence (CDS) from alignment at P-canaliculata_contig9798:7906..11799+

>mRNA_P-canaliculata_contig9798.23893.1 ID=mRNA_P-canaliculata_contig9798.23893.1|Name=mRNA_P-canaliculata_contig9798.23893.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1398bp|location=Sequence derived from alignment at P-canaliculata_contig9798:7906..11799+ (Pelvetia canaliculata dioecious)
TCGCTCCCAATCCTGGTCGTTGTTGGGGGGGGTGGGGGGGGGGAACAGAG
GGCGCTGGACCCCGAGGCGTACATCCCGTTTACCCTGGAGAGGCGAGAGG
TCCTGTCGCACGACACGAGGAGGTTCCGCTTCGCTCTACAGACGCCCTCT
CACATCCTCGGGCTCCCGATCGGCCAACACGTGTCCATGAAGTACGTGGA
CGAGAAGGGCAAGATCGTCACGAGGTCCTACACGCCAACCAGCTCCGACA
TGAACTCGCTCCCAATCCTGGTCGTTGTTGGGGGGGGTGGGGGGGGGGAA
CAGAGGGCGCTGGACCCCGAGGCGTACATCCCGTTTACCCTGGAGAGGCG
AGAGGTCCTGTCGCACGACACGAGGAGGTTCCGCTTCGCTCTACAGACGC
CCTCTCACATCCTCGGGCTCCCGATCGGCCAACACGTGTCCATGAAGTAC
GTGGACGAGAAGGGCAAGATCGTCACGAGGTCCTACACGCCAACCAGCTC
CGACATGAACGTCGGACACGTTGACTTCGTGATCAAGGTGTACTTTCCCA
ACGTGGAGCCAAGGTTTCCGGAGGGCGGAAAGATGTCCATGCACCTGGAG
AGCTTGAAGGTCGGACACGTTGACTTCGTGATCAAGGTGTACTTTCCCAA
CGTGGAGCCAAGGTTTCCGGAGGGCGGAAAGATGTCCATGCACCTGGAGA
GCTTGAAGCTGGGCGACAAGGTGGAGATGCGGGGGCCGAAGGGAAGCCTG
ACGTACCTGGGGAAGGGGGTGTTCCGGATAAAGCGCAGGGAAGATCGAAA
GCTGGGCGACAAGGTGGAGATGCGGGGGCCGAAGGGAAGCCTGACGTACC
TGGGGAAGGGGGTGTTCCGGATAAAGCGCAGGGAAGATCGAAAGGTGCGC
AAGCTGGGCATGATGGCCGGCGGGACGGGCATTACCCCCATGCTTCAGGT
GATCAACGCCATCATGCGGGAAGGAGCCGGGCTGGAGTTGAGCCTCATCT
TCGCCAACAAGTCGGAGGATGACATCTTGCTCCGCGACATGATCGAGAAG
TTGGTGCGCAAGCTGGGCATGATGGCCGGCGGGACGGGCATTACCCCCAT
GCTTCAGGTGATCAACGCCATCATGCGGGAAGGAGCCGGGCTGGAGTTGA
GCCTCATCTTCGCCAACAAGTCGGAGGATGACATCTTGCTCCGCGACATG
ATCGAGAAGTTGGCCGCCGAGAACACGAGCTTCAAGTTTCACTACACGCT
CGACAAGGCTCCCCAGGGCTGGAAGCACAGCCAGGGGTTCATCACAACCG
AGGTAGCCGCCGAGAACACGAGCTTCAAGTTTCACTACACGCTCGACAAG
GCTCCCCAGGGCTGGAAGCACAGCCAGGGGTTCATCACAACCGAGGTA
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