mRNA_P-canaliculata_contig9798.23893.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig9798.23893.1 vs. uniprot
Match: D7FNE6_ECTSI (NADH-cytochrome b5 reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNE6_ECTSI) HSP 1 Score: 345 bits (884), Expect = 3.640e-117 Identity = 171/235 (72.77%), Postives = 198/235 (84.26%), Query Frame = 1 Query: 1 SLPILVVXXXXXXXEQRALDPEAYIPFTLERREVLSHDTRRFRFALQTPSHILGLPIGQHVSMKYVDEKGKIVTRSYTPTSSDMNVGHVDFVIKVYFPNVEPRFPEGGKMSMHLESLKLGDKVEMRGPKGSLTYLGKGVFRIKRREDRKVRKLGMMAGGTGITPMLQVINAIMREGA-GL-ELSLIFANKSEDDILLRDMIEKLAAENTSFKFHYTLDKAPQGWKHSQGFITTEV 699 ++ LV+ ++ AL PE Y PF L+ + LSHDTR FRFALQ+P H+LGLPIGQHVSMK+VD GKIVTRSYTPTSSD+N+GHVDFVIKVY PN P+FP+GGKMSMHLE LK+GD V+MRGPKG+LTYLG G F I+RR+DR+VRKLGMMAGGTGITPMLQVI+AIMREG+ GL E+SLIFANKSEDDILLRDMIEKLAA N +FKFHYTLD P+GW HSQGFI+ E+ Sbjct: 15 AVTFLVIIVSSAKQKKIALQPEVYAPFRLQEKVELSHDTRMFRFALQSPKHVLGLPIGQHVSMKFVDADGKIVTRSYTPTSSDINLGHVDFVIKVYRPNEHPKFPDGGKMSMHLERLKIGDTVDMRGPKGNLTYLGTGNFSIRRRDDRQVRKLGMMAGGTGITPMLQVISAIMREGSTGLVEMSLIFANKSEDDILLRDMIEKLAASNPNFKFHYTLDTVPEGWAHSQGFISKEM 249
BLAST of mRNA_P-canaliculata_contig9798.23893.1 vs. uniprot
Match: A0A835ZPK9_9STRA (NADH-cytochrome b5 reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPK9_9STRA) HSP 1 Score: 291 bits (744), Expect = 1.180e-95 Identity = 133/216 (61.57%), Postives = 175/216 (81.02%), Query Frame = 1 Query: 52 ALDPEAYIPFTLERREVLSHDTRRFRFALQTPSHILGLPIGQHVSMKYVDEKGKIVTRSYTPTSSDMNVGHVDFVIKVYFPNVEPRFPEGGKMSMHLESLKLGDKVEMRGPKGSLTYLGKGVFRIKRREDRKVRKLGMMAGGTGITPMLQVINAIMREGAGLELSLIFANKSEDDILLRDMIEKLAAENTSFKFHYTLDKAPQGWKHSQGFITTEV 699 AL Y PF L+ ++ +S DTR FRFALQ+ H+LGLPIGQH+S+K++D GK+VTRSYTPTSSD VG+VDFVIKVYFPN P+FP+GGKMS HL LK+GD ++M GPKGSL Y GKG+F I++REDR+V+++GM+AGGTGITPMLQ++NAI +E + +ELSLIFAN+SE DILLRDMIE ++ +F++H+T+D+ +GW S GFIT ++ Sbjct: 51 ALSKSEYRPFVLQEKQNISRDTRLFRFALQSAKHVLGLPIGQHISLKFIDGAGKMVTRSYTPTSSDDEVGYVDFVIKVYFPNEHPKFPDGGKMSYHLHDLKVGDTIDMMGPKGSLEYKGKGLFSIRKREDRQVKRIGMLAGGTGITPMLQIMNAIRKENSNIELSLIFANQSEQDILLRDMIEAFPMKHANFRYHFTVDRPSEGWTGSVGFITADM 266
BLAST of mRNA_P-canaliculata_contig9798.23893.1 vs. uniprot
Match: A0A6V1RBP2_HETAK (NADH-cytochrome b5 reductase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RBP2_HETAK) HSP 1 Score: 268 bits (686), Expect = 1.110e-86 Identity = 130/222 (58.56%), Postives = 171/222 (77.03%), Query Frame = 1 Query: 43 EQRALDPEAYIPFTLERREVLSHDTRRFRFALQTPSHILGLPIGQHVSMKYVDEKGKIVTRSYTPTSSDMNVGHVDFVIKVYFPNVEPRFPEGGKMSMHLESLKLGDKVEMRGPKGSLTYLGKGVFRIKRRED---RKVRKLGMMAGGTGITPMLQVINAIMREGAGLELSLIFANKSEDDILLRDMIEKLAAENTSFKFHYTLDKAPQGWKHSQGFITTEV 699 ++ ALDPE +IP L + L+HDTRRF FALQTP +LGLPIGQH+S ++ D +GK+ RSYTPT+ + +G V+FVIKVYF N P+FPEGGKMS HLESLK+GD +EMRGPKG L Y G G F +K+ D + V K+GMMAGGTGITPMLQVI AI++EG+G+E+SL+FAN+SEDDILLR +++LA ++ +FK YT+D+ P+ W S+GFI ++ Sbjct: 57 KKNALDPEKFIPLKLIDKVELTHDTRRFVFALQTPETVLGLPIGQHISFRFKDGEGKVCQRSYTPTTGNDTLGRVEFVIKVYFANKHPKFPEGGKMSQHLESLKIGDTLEMRGPKGHLDYKGSGNFTLKKLTDVTEKTVTKVGMMAGGTGITPMLQVIKAILKEGSGIEMSLLFANQSEDDILLRADLDELARKHANFKVWYTVDRPPKHWTFSEGFINKKM 278
BLAST of mRNA_P-canaliculata_contig9798.23893.1 vs. uniprot
Match: A0A7S2V3I9_9STRA (NADH-cytochrome b5 reductase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3I9_9STRA) HSP 1 Score: 268 bits (684), Expect = 1.730e-86 Identity = 131/219 (59.82%), Postives = 165/219 (75.34%), Query Frame = 1 Query: 52 ALDPEAYIPFTLERREVLSHDTRRFRFALQTPSHILGLPIGQHVSMKYVDEKGKIVTRSYTPTSSDMNVGHVDFVIKVYFPNVEPRFPEGGKMSMHLESLKLGDKVEMRGPKGSLTYLGKGVFRIKRR---EDRKVRKLGMMAGGTGITPMLQVINAIMREGAGLELSLIFANKSEDDILLRDMIEKLAAENTSFKFHYTLDKAPQGWKHSQGFITTEV 699 ALDPE YI F L +E LSHDTRRFRF LQ+P HILGLPIGQH+S K+ ++GKIVTRSYTPTSSD G+VDFVIKVYF N P+FP GG MS HLESL +GD +EMRGPKG LTY G G I +R E R R++GM+AGGTGITPMLQV++AI++E + +++ L+FAN++ DDIL+R +E + +NT+ + YTLD+ P GW S GF+ E+ Sbjct: 53 ALDPEKYISFPLIEKEELSHDTRRFRFGLQSPDHILGLPIGQHISFKFQTKEGKIVTRSYTPTSSDDEKGYVDFVIKVYFANKHPKFPAGGLMSQHLESLNIGDTIEMRGPKGHLTYKGHGKMAIAKRGEVETRYARQIGMIAGGTGITPMLQVMSAIVKEKSRVDIWLLFANQTADDILVRSELEGMLKDNTNIRLWYTLDRPPAGWPFSTGFVDAEM 271
BLAST of mRNA_P-canaliculata_contig9798.23893.1 vs. uniprot
Match: W7U134_9STRA (NADH-cytochrome b5 reductase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U134_9STRA) HSP 1 Score: 263 bits (672), Expect = 7.660e-84 Identity = 127/221 (57.47%), Postives = 172/221 (77.83%), Query Frame = 1 Query: 52 ALDPEAYIPFTLERREVLSHDTRRFRFALQTPSHILGLPIGQHVSMKYVDEKGKIVTRSYTPTSSDMNVGHVDFVIKVYFPNVEPRFPEGGKMSMHLESLKLGDKVEMRGPKGSLTYLGKGVFRIKRR---EDRKVRKLGMMAGGTGITPMLQVINAIMRE-GAGLELSLIFANKSEDDILLRDMIEKLAAENTS-FKFHYTLDKAPQGWKHSQGFITTEV 699 AL+P+ Y+PF L RE L+H+TRRFRFALQ+P H+LGLP+GQHVS+KY D +GK VTRSYTP SSD ++G+VDF IKVYF N P+FPEGGKMS HLE+L+LGD + MRGPKGSLTY G+G F +K R R V K+GM+AGGTGITPMLQ+I ++++ G ++ L++AN++E+DILL++ +E++A + FK +YTLD+ P WK GF+T+++ Sbjct: 113 ALNPDNYLPFKLVEREELTHNTRRFRFALQSPQHVLGLPVGQHVSLKYTDSEGKDVTRSYTPISSDDDLGYVDFAIKVYFANTHPKFPEGGKMSQHLEALQLGDSILMRGPKGSLTYQGRGHFALKSRGALSSRTVSKVGMIAGGTGITPMLQIIREMLKDKGDKTKVWLLYANQTENDILLQEELEEIAQHHPDRFKLYYTLDRPPTKWKQGIGFVTSDM 333
BLAST of mRNA_P-canaliculata_contig9798.23893.1 vs. uniprot
Match: A0A024TWH3_9STRA (NADH-cytochrome b5 reductase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TWH3_9STRA) HSP 1 Score: 253 bits (646), Expect = 8.910e-81 Identity = 123/222 (55.41%), Postives = 162/222 (72.97%), Query Frame = 1 Query: 55 LDPEAYIPFTLERREVLSHDTRRFRFALQTPSHILGLPIGQHVSMKYVDEKGKIVTRSYTPTSSDMNVGHVDFVIKVYFPNVEPRFPEGGKMSMHLESLKLGDKVEMRGPKGSLTYLGKGVFRIKRR------EDRKVRKLGMMAGGTGITPMLQVIN-AIMREGAGLELSLIFANKSEDDILLRDMIEKLAAENTSFKFHYTLDKAPQGWKHSQGFITTEV 699 L P + + L +E+LSHDTRRFRFAL T H+LGLP+GQH+S++Y D +GK+V RSYTP SSD VG+VD V+KVYF NV P+FP+GGKMS +LESL+LGD +E+ GPKG LTY G GVF +K R E RK +K+GM+AGGTGITPMLQVI A+ E S++FAN++E+DIL RD ++++A E+ + K YT+D+A WK S GF+T + Sbjct: 47 LKPNSTVMLKLVEKEILSHDTRRFRFALPTEHHVLGLPVGQHISLRYTDSEGKLVMRSYTPVSSDDAVGYVDLVVKVYFKNVHPKFPDGGKMSQYLESLQLGDAIEVSGPKGKLTYKGLGVFELKHRVNDTEVEVRKAKKIGMIAGGTGITPMLQVIRYALKNPNEKTEFSILFANQTENDILCRDELDQMAKEHPNVKVWYTVDRATDSWKFSTGFVTKSM 268
BLAST of mRNA_P-canaliculata_contig9798.23893.1 vs. uniprot
Match: C1FJ74_MICCC (NADH-cytochrome b5 reductase n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FJ74_MICCC) HSP 1 Score: 253 bits (646), Expect = 1.290e-80 Identity = 126/227 (55.51%), Postives = 164/227 (72.25%), Query Frame = 1 Query: 46 QRALDPEAYIPFTLERREVLSHDTRRFRFALQTPSHILGLPIGQHVSMKYVDEKGKIVTRSYTPTSSDMNVGHVDFVIKVYFPNVEPRFPEGGKMSMHLESLKLGDKVEMRGPKGSLTYLGKGVFRIKRR-------EDRKVRKLGMMAGGTGITPMLQVINAIMRE-GAGLELSLIFANKSEDDILLRDMIEKLAAENTSFKFHYTLDKAP-QGWKHSQGFITTEV 699 ++ALDP + L +R LSHDT FRF L TP HILGLPIGQH+++ Y D+ GK R YTPTSSD++ GHVDFVIKVYFPN RFPEGGK+S H+ SLK+GD ++ GPKG Y GKG F IKR E RK +K+GM+AGGTGITPMLQV+ A+ R+ G ++SLIFAN++E+DILLRD ++K ++ +FK HYT+D+ P +GW++ GF+T E+ Sbjct: 56 KKALDPSKKVALKLVKRTELSHDTHMFRFGLPTPEHILGLPIGQHIALSYTDKDGKEQGRPYTPTSSDVDKGHVDFVIKVYFPN--ERFPEGGKVSQHMHSLKIGDTLDFSGPKGRYEYRGKGTFAIKRLKSQGGGFEIRKAKKIGMIAGGTGITPMLQVMRAVFRDKGDKTDMSLIFANQTEEDILLRDELDKCERDHDNFKLHYTVDRPPAKGWRYDTGFVTAEM 280
BLAST of mRNA_P-canaliculata_contig9798.23893.1 vs. uniprot
Match: A0A0P1AJY9_PLAHL (NADH-cytochrome b5 reductase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AJY9_PLAHL) HSP 1 Score: 253 bits (645), Expect = 1.570e-80 Identity = 124/222 (55.86%), Postives = 164/222 (73.87%), Query Frame = 1 Query: 55 LDPEAYIPFTLERREVLSHDTRRFRFALQTPSHILGLPIGQHVSMKYVDEKGKIVTRSYTPTSSDMNVGHVDFVIKVYFPNVEPRFPEGGKMSMHLESLKLGDKVEMRGPKGSLTYLGKGVFRIKRR------EDRKVRKLGMMAGGTGITPMLQVINAIMREGAG-LELSLIFANKSEDDILLRDMIEKLAAENTSFKFHYTLDKAPQGWKHSQGFITTEV 699 L P ++P L ++VLSHDTRRFRFAL + H+LGLP+GQH+S++Y D++GK+V RSYTP SSD G+VD VIKVYF NV P+FPEGGKMS HLESL +GD +E+ GPKG L+Y+GKG IK R E RK ++GM+AGGTGITPMLQV+ +++ E L+FAN++E+DIL RD IE +AA + +FKF YT+DKA GW +S GF++ ++ Sbjct: 56 LPPTVHLP--LIEKQVLSHDTRRFRFALPSNQHVLGLPVGQHISLRYTDDEGKVVMRSYTPVSSDDTRGYVDLVIKVYFKNVHPKFPEGGKMSQHLESLAIGDTIEVSGPKGKLSYMGKGEIHIKHRVRDVVPEIRKAAQIGMIAGGTGITPMLQVVRRALQDPEDKTEFYLLFANQTENDILCRDEIEAMAATHPNFKFWYTVDKASDGWPYSTGFVSADM 275
BLAST of mRNA_P-canaliculata_contig9798.23893.1 vs. uniprot
Match: A0A485L3J1_9STRA (NADH-cytochrome b5 reductase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L3J1_9STRA) HSP 1 Score: 252 bits (644), Expect = 1.580e-80 Identity = 122/222 (54.95%), Postives = 162/222 (72.97%), Query Frame = 1 Query: 55 LDPEAYIPFTLERREVLSHDTRRFRFALQTPSHILGLPIGQHVSMKYVDEKGKIVTRSYTPTSSDMNVGHVDFVIKVYFPNVEPRFPEGGKMSMHLESLKLGDKVEMRGPKGSLTYLGKGVFRIKRR------EDRKVRKLGMMAGGTGITPMLQVIN-AIMREGAGLELSLIFANKSEDDILLRDMIEKLAAENTSFKFHYTLDKAPQGWKHSQGFITTEV 699 L P+ + L +E LSHDTRRFRFAL + H+LGLP+GQH+S+++ DE+GK+V RSYTP SSD +G+VD V+K+YF NV P+FP+GGKMS HLESLKLGD +E+ GPKG LTY G GVF IK R E RK +K+GM+AGGTGITPMLQVI A+ E S++FAN++EDDIL R +E++A ++ + K YT+D+ + WK+S GFI ++ Sbjct: 43 LKPDETVMLKLIEKETLSHDTRRFRFALPSEKHVLGLPVGQHISLRFTDEEGKLVMRSYTPVSSDDVLGYVDLVVKIYFKNVHPKFPDGGKMSQHLESLKLGDAIEVSGPKGKLTYKGLGVFTIKHRVKDTTVETRKAKKIGMVAGGTGITPMLQVIRYALQNPKETTEFSILFANQTEDDILCRAELEQMAKDHPNVKVWYTIDRPTESWKYSSGFINKQM 264
BLAST of mRNA_P-canaliculata_contig9798.23893.1 vs. uniprot
Match: D0NRY2_PHYIT (NADH-cytochrome b5 reductase n=18 Tax=Phytophthora TaxID=4783 RepID=D0NRY2_PHYIT) HSP 1 Score: 251 bits (640), Expect = 7.910e-80 Identity = 125/222 (56.31%), Postives = 162/222 (72.97%), Query Frame = 1 Query: 55 LDPEAYIPFTLERREVLSHDTRRFRFALQTPSHILGLPIGQHVSMKYVDEKGKIVTRSYTPTSSDMNVGHVDFVIKVYFPNVEPRFPEGGKMSMHLESLKLGDKVEMRGPKGSLTYLGKGVFRIKRR------EDRKVRKLGMMAGGTGITPMLQVINAIMREGAG-LELSLIFANKSEDDILLRDMIEKLAAENTSFKFHYTLDKAPQGWKHSQGFITTEV 699 L P ++P L + LSHDTRRFRFAL +P HILGLP+GQH+S+++ D +GK+V RSYTP SSD G+VD VIKVYF NV P+FP+GGKMS HLESL +GD +E+ GPKG L+Y+GKG I+ R E RK K+GM+AGGTGITPMLQVI +++ E L+FAN++E DIL R+ IE +AA +T+ KF YT+DKA GWK+S GF+T ++ Sbjct: 52 LPPTVHLP--LVEKHSLSHDTRRFRFALPSPQHILGLPVGQHISLRFKDNEGKLVMRSYTPVSSDDTKGYVDLVIKVYFKNVHPKFPDGGKMSQHLESLAVGDTIEVSGPKGKLSYMGKGEIHIRHRVRDVVPEVRKATKIGMIAGGTGITPMLQVIRRALQDPEDKTEFYLLFANQTEADILCREEIEGMAANHTNVKFWYTVDKATDGWKYSTGFVTADM 271 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9798.23893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9798.23893.1 >prot_P-canaliculata_contig9798.23893.1 ID=prot_P-canaliculata_contig9798.23893.1|Name=mRNA_P-canaliculata_contig9798.23893.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=233bp SLPILVVVGGGGGGEQRALDPEAYIPFTLERREVLSHDTRRFRFALQTPSback to top mRNA from alignment at P-canaliculata_contig9798:7906..11799+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig9798.23893.1 ID=mRNA_P-canaliculata_contig9798.23893.1|Name=mRNA_P-canaliculata_contig9798.23893.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3894bp|location=Sequence derived from alignment at P-canaliculata_contig9798:7906..11799+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9798:7906..11799+ >mRNA_P-canaliculata_contig9798.23893.1 ID=mRNA_P-canaliculata_contig9798.23893.1|Name=mRNA_P-canaliculata_contig9798.23893.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1398bp|location=Sequence derived from alignment at P-canaliculata_contig9798:7906..11799+ (Pelvetia canaliculata dioecious)back to top |