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Homology
BLAST of mRNA_P-canaliculata_contig9796.23892.1 vs. uniprot
Match: F0W6E8_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W6E8_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 4.280e-10 Identity = 37/118 (31.36%), Postives = 64/118 (54.24%), Query Frame = 1 Query: 1 MMEIDKLAADLHRLGDKSKTKQRKCVIIVSGLSADFEMECRMLENNPDDLNRAEIERVVGNQYNRFLRQQQDSKALSASRGTVTANRGKRKDRRPHYKFNGKCFKCGKKGHRAGDCRS 354
MM+ DKL ++ + D Q VI++ L DF+ R+LE+ P ++ + + ++ R ++ AL A+RG ++ + +R +FNGKCF+CGK+GHR +CR+
Sbjct: 4 MMKFDKLTMEIAAMED-GLNDQEMIVILLGSLPVDFDPIVRILESMPG-IDLISAKGTLQREWERMQNRESSEVALQATRGRISKKKYQRHPGTLGEEFNGKCFQCGKRGHRKNECRT 119
BLAST of mRNA_P-canaliculata_contig9796.23892.1 vs. uniprot
Match: F0X0S7_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X0S7_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 5.270e-8 Identity = 38/120 (31.67%), Postives = 63/120 (52.50%), Query Frame = 1 Query: 1 MMEIDKLAADLHRLGDKSKTKQRKCVIIVSGLSADFEMECRMLEN--NPDDLNRAEIERVVGNQYNRFLRQQQDSKALSASRGTVTANRGKRKDRRPHYKFNGKCFKCGKKGHRAGDCRS 354
MM+ DKL ++ +GD Q VI++ L +F+ R+LEN D ++ E R ++ R ++ L +RG ++ + +R +FNGKCF+CGK+GHR +CR+
Sbjct: 4 MMKFDKLTMEMAAMGD-GLNDQEMLVILLGSLPLNFDPIVRILENITGIDLMSAKETPR---REWGRIKNRESSEVTLEVTRGRISKKKYQRNPGTVGEEFNGKCFQCGKRGHRKYECRT 119
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9796.23892.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
| Match Name | E-value | Identity | Description | |
|---|
| F0W6E8_9STRA | 4.280e-10 | 31.36 | Putative polyprotein n=1 Tax=Albugo laibachii Nc14... | [more] |
| F0X0S7_9STRA | 5.270e-8 | 31.67 | Putative polyprotein n=1 Tax=Albugo laibachii Nc14... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 354 |
| Cds size | 354 |
| Stop | 0 |
| Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817341.7402618-CDS-P-canaliculata_contig9796:726..1080 | 1622817341.7402618-CDS-P-canaliculata_contig9796:726..1080 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig9796 727..1080 - |
| 1693495234.586709-CDS-P-canaliculata_contig9796:726..1080 | 1693495234.586709-CDS-P-canaliculata_contig9796:726..1080 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig9796 727..1080 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9796.23892.1 >prot_P-canaliculata_contig9796.23892.1 ID=prot_P-canaliculata_contig9796.23892.1|Name=mRNA_P-canaliculata_contig9796.23892.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=118bp
MMEIDKLAADLHRLGDKSKTKQRKCVIIVSGLSADFEMECRMLENNPDDL
NRAEIERVVGNQYNRFLRQQQDSKALSASRGTVTANRGKRKDRRPHYKFN
GKCFKCGKKGHRAGDCRS back to topmRNA from alignment at P-canaliculata_contig9796:727..1080- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig9796.23892.1 ID=mRNA_P-canaliculata_contig9796.23892.1|Name=mRNA_P-canaliculata_contig9796.23892.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=354bp|location=Sequence derived from alignment at P-canaliculata_contig9796:727..1080- (Pelvetia canaliculata dioecious)
ATGATGGAAATTGACAAGCTAGCAGCAGACCTTCACCGTTTGGGTGACAA
ATCCAAAACCAAACAGAGAAAGTGCGTGATCATTGTGTCTGGTCTGTCCG
CTGATTTTGAAATGGAGTGCCGAATGCTAGAGAATAACCCTGATGATCTT
AATAGGGCCGAGATTGAGCGAGTTGTAGGGAATCAGTACAACAGATTTCT
CAGGCAGCAACAGGACTCGAAGGCATTGTCGGCATCGAGGGGCACCGTCA
CGGCGAATCGCGGGAAGCGGAAGGACAGGAGACCCCACTATAAATTCAAT
GGTAAATGCTTCAAGTGCGGAAAGAAAGGTCACCGCGCTGGAGACTGCAG
GAGC back to topCoding sequence (CDS) from alignment at P-canaliculata_contig9796:727..1080- >mRNA_P-canaliculata_contig9796.23892.1 ID=mRNA_P-canaliculata_contig9796.23892.1|Name=mRNA_P-canaliculata_contig9796.23892.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at P-canaliculata_contig9796:727..1080- (Pelvetia canaliculata dioecious)
ATGATGGAAATTGACAAGCTAGCAGCAGACCTTCACCGTTTGGGTGACAA
ATCCAAAACCAAACAGAGAAAGTGCGTGATCATTGTGTCTGGTCTGTCCG
CTGATTTTGAAATGGAGTGCCGAATGCTAGAGAATAACCCTGATGATCTT
AATAGGGCCGAGATTGAGCGAGTTGTAGGGAATCAGTACAACAGATTTCT
CAGGCAGCAACAGGACTCGAAGGCATTGTCGGCATCGAGGGGCACCGTCA
CGGCGAATCGCGGGAAGCGGAAGGACAGGAGACCCCACTATAAATTCAAT
GGTAAATGCTTCAAGTGCGGAAAGAAAGGTCACCGCGCTGGAGACTGCAG
GAGCATGATGGAAATTGACAAGCTAGCAGCAGACCTTCACCGTTTGGGTG
ACAAATCCAAAACCAAACAGAGAAAGTGCGTGATCATTGTGTCTGGTCTG
TCCGCTGATTTTGAAATGGAGTGCCGAATGCTAGAGAATAACCCTGATGA
TCTTAATAGGGCCGAGATTGAGCGAGTTGTAGGGAATCAGTACAACAGAT
TTCTCAGGCAGCAACAGGACTCGAAGGCATTGTCGGCATCGAGGGGCACC
GTCACGGCGAATCGCGGGAAGCGGAAGGACAGGAGACCCCACTATAAATT
CAATGGTAAATGCTTCAAGTGCGGAAAGAAAGGTCACCGCGCTGGAGACT
GCAGGAGC back to top
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