mRNA_P-canaliculata_contig97919.23889.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig97919.23889.1
Unique NamemRNA_P-canaliculata_contig97919.23889.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97919.23889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig97919contigP-canaliculata_contig97919:219..1067 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size849
Cds size849
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817341.5357375-CDS-P-canaliculata_contig97919:218..10671622817341.5357375-CDS-P-canaliculata_contig97919:218..1067Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97919 219..1067 +
1693495234.458675-CDS-P-canaliculata_contig97919:218..10671693495234.458675-CDS-P-canaliculata_contig97919:218..1067Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97919 219..1067 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig97919.23889.1prot_P-canaliculata_contig97919.23889.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig97919 219..1067 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig97919.23889.1

>prot_P-canaliculata_contig97919.23889.1 ID=prot_P-canaliculata_contig97919.23889.1|Name=mRNA_P-canaliculata_contig97919.23889.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=283bp
DWSLGGSLRDFWQSKGSLVISDTKAIISDLTTGQLEKLVIKQSQVARLTS
LDGVWQLENPFRIENKRFYVEVLPFVNKLPSKLNIKFQSDIFLDILPKFY
RKIETSSGSVTAVANLYGSVSNPEIDANLRCSDSNLVSVGISSLRPSFEN
IECDILYRKGVLSISKLRSKKGLGTIDINGSLGISAKAATGYSGIKVTFD
GAKFIAPVKYFKYFDSVVSGNLYITGSKKPYQLAGSINVLRALATRDFDV
DQEIVNNIRRGSFNFKEVSETPLFNFNVDVNSN
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mRNA from alignment at P-canaliculata_contig97919:219..1067+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig97919.23889.1 ID=mRNA_P-canaliculata_contig97919.23889.1|Name=mRNA_P-canaliculata_contig97919.23889.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=849bp|location=Sequence derived from alignment at P-canaliculata_contig97919:219..1067+ (Pelvetia canaliculata dioecious)
GATTGGAGTCTTGGCGGTTCGTTACGAGACTTTTGGCAGTCAAAAGGTTC
TCTGGTGATTTCAGATACGAAAGCCATTATTAGTGATTTAACGACAGGCC
AGCTAGAGAAGCTTGTTATTAAACAGAGCCAAGTAGCCAGGCTAACTTCT
TTAGATGGTGTCTGGCAGCTTGAAAATCCGTTTAGAATAGAGAATAAACG
CTTTTATGTTGAGGTCTTGCCTTTCGTAAACAAGCTACCTTCAAAACTTA
ACATCAAATTTCAGAGTGATATATTTCTAGATATTTTGCCGAAGTTCTAC
AGGAAGATTGAGACATCTAGTGGCTCTGTTACAGCCGTTGCCAATCTTTA
TGGCTCCGTCTCAAATCCCGAAATAGATGCCAACCTTAGATGCTCTGATT
CAAACTTAGTTAGTGTAGGGATTAGTAGTCTTCGACCTAGCTTTGAGAAT
ATTGAGTGTGATATTCTTTATAGAAAGGGAGTGCTATCGATTAGTAAACT
AAGATCTAAAAAAGGTCTTGGTACGATCGATATAAATGGCTCCTTAGGCA
TTAGTGCCAAAGCCGCGACGGGTTATTCTGGCATTAAGGTAACCTTCGAC
GGGGCTAAGTTTATCGCCCCGGTTAAGTATTTCAAGTATTTCGACAGCGT
GGTTTCAGGCAACCTCTACATTACGGGAAGTAAAAAACCCTATCAATTGG
CTGGGTCCATCAACGTACTGAGGGCTCTTGCAACCAGGGATTTTGACGTT
GACCAAGAGATTGTAAATAATATTAGGCGGGGTAGTTTTAACTTTAAAGA
GGTATCTGAGACGCCACTTTTTAACTTCAACGTCGATGTAAACTCCAAT
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Coding sequence (CDS) from alignment at P-canaliculata_contig97919:219..1067+

>mRNA_P-canaliculata_contig97919.23889.1 ID=mRNA_P-canaliculata_contig97919.23889.1|Name=mRNA_P-canaliculata_contig97919.23889.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1698bp|location=Sequence derived from alignment at P-canaliculata_contig97919:219..1067+ (Pelvetia canaliculata dioecious)
GATTGGAGTCTTGGCGGTTCGTTACGAGACTTTTGGCAGTCAAAAGGTTC
TCTGGTGATTTCAGATACGAAAGCCATTATTAGTGATTTAACGACAGGCC
AGCTAGAGAAGCTTGTTATTAAACAGAGCCAAGTAGCCAGGCTAACTTCT
TTAGATGGTGTCTGGCAGCTTGAAAATCCGTTTAGAATAGAGAATAAACG
CTTTTATGTTGAGGTCTTGCCTTTCGTAAACAAGCTACCTTCAAAACTTA
ACATCAAATTTCAGAGTGATATATTTCTAGATATTTTGCCGAAGTTCTAC
AGGAAGATTGAGACATCTAGTGGCTCTGTTACAGCCGTTGCCAATCTTTA
TGGCTCCGTCTCAAATCCCGAAATAGATGCCAACCTTAGATGCTCTGATT
CAAACTTAGTTAGTGTAGGGATTAGTAGTCTTCGACCTAGCTTTGAGAAT
ATTGAGTGTGATATTCTTTATAGAAAGGGAGTGCTATCGATTAGTAAACT
AAGATCTAAAAAAGGTCTTGGTACGATCGATATAAATGGCTCCTTAGGCA
TTAGTGCCAAAGCCGCGACGGGTTATTCTGGCATTAAGGTAACCTTCGAC
GGGGCTAAGTTTATCGCCCCGGTTAAGTATTTCAAGTATTTCGACAGCGT
GGTTTCAGGCAACCTCTACATTACGGGAAGTAAAAAACCCTATCAATTGG
CTGGGTCCATCAACGTACTGAGGGCTCTTGCAACCAGGGATTTTGACGTT
GACCAAGAGATTGTAAATAATATTAGGCGGGGTAGTTTTAACTTTAAAGA
GGTATCTGAGACGCCACTTTTTAACTTCAACGTCGATGTAAACTCCAATG
ATTGGAGTCTTGGCGGTTCGTTACGAGACTTTTGGCAGTCAAAAGGTTCT
CTGGTGATTTCAGATACGAAAGCCATTATTAGTGATTTAACGACAGGCCA
GCTAGAGAAGCTTGTTATTAAACAGAGCCAAGTAGCCAGGCTAACTTCTT
TAGATGGTGTCTGGCAGCTTGAAAATCCGTTTAGAATAGAGAATAAACGC
TTTTATGTTGAGGTCTTGCCTTTCGTAAACAAGCTACCTTCAAAACTTAA
CATCAAATTTCAGAGTGATATATTTCTAGATATTTTGCCGAAGTTCTACA
GGAAGATTGAGACATCTAGTGGCTCTGTTACAGCCGTTGCCAATCTTTAT
GGCTCCGTCTCAAATCCCGAAATAGATGCCAACCTTAGATGCTCTGATTC
AAACTTAGTTAGTGTAGGGATTAGTAGTCTTCGACCTAGCTTTGAGAATA
TTGAGTGTGATATTCTTTATAGAAAGGGAGTGCTATCGATTAGTAAACTA
AGATCTAAAAAAGGTCTTGGTACGATCGATATAAATGGCTCCTTAGGCAT
TAGTGCCAAAGCCGCGACGGGTTATTCTGGCATTAAGGTAACCTTCGACG
GGGCTAAGTTTATCGCCCCGGTTAAGTATTTCAAGTATTTCGACAGCGTG
GTTTCAGGCAACCTCTACATTACGGGAAGTAAAAAACCCTATCAATTGGC
TGGGTCCATCAACGTACTGAGGGCTCTTGCAACCAGGGATTTTGACGTTG
ACCAAGAGATTGTAAATAATATTAGGCGGGGTAGTTTTAACTTTAAAGAG
GTATCTGAGACGCCACTTTTTAACTTCAACGTCGATGTAAACTCCAAT
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