mRNA_P-canaliculata_contig97915.23888.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_P-canaliculata_contig97915.23888.1 vs. uniprot
Match: A0A518CVV2_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Pla163 TaxID=2528008 RepID=A0A518CVV2_9BACT) HSP 1 Score: 193 bits (491), Expect = 4.070e-54 Identity = 141/341 (41.35%), Postives = 181/341 (53.08%), Query Frame = 1 Query: 1 ESAALFDLLGHLGLGPSAAAKLEAGAGEAASLASFASVAWDARTQVAKARLALAAIRARRQAVLVLADEASSDLGRIEILQRTGRVGLAPARAAHGMVAALERRASVLAEMESVARAVLARAAGMTPDDPALE------QPGAELLLHLSEGPLPAEPTGEGEL-RHPSLTEAHLEVALREARVRSAAAASWPGIGVGPHLSLPSGGLRDTIRVGGLFQVTLPLPSSWRGIMESRLELRAAAVEGYVDALVDLRSRARDAETRALEIQGRS-GFTAAVHHAAEDAWISARAGFRVGRVDLNLWIQALERQGNAITMPIDDLEALALAALDLEWAAGPEAAR 999
E A FDLLG LG+GP+ + + A A + A S W + V ARL A AR + + + ++AS+D RI IL G +G APA AA V ++ER S +A + RA LA AAG+ P+D A E +P +E L P G+G L HP L E ALREA VRS A ++WP +G+GPHL G D + +GG+ Q+TLP PSSWRG + +E R A +E Y D L L R A R EI R+ G T V + W +ARA FRVGR+ + WI AL R+ A T IDD EALALA + L A GP R
Sbjct: 142 ELVATFDLLGLLGIGPARSERERAAAAVVVAAAELESEIWRSWLTVDAARLRFQAAAARERLLAEVLEQASADFDRIVILHERGWIGDAPAAAARAAVGSVERARSSVAADVAARRATLAHAAGVPPEDGAFEALLAPDRPASEPALR------PNAELGDGALFEHPRLRELRTRFALREAEVRSVATSAWPNVGIGPHL-----GYEDDLAIGGVLQLTLPFPSSWRGRLAGAVERRDAVIEAYEDELHLLLVEERSARERRDEIHRRTTGATRLVVEGSTAGWSAARASFRVGRMPVLEWIDALYRRLGATTAEIDDAEALALAQVALAGARGPAGTR 471
BLAST of mRNA_P-canaliculata_contig97915.23888.1 vs. uniprot
Match: A0A518EUV2_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518EUV2_9BACT) HSP 1 Score: 167 bits (422), Expect = 5.640e-44 Identity = 128/345 (37.10%), Postives = 179/345 (51.88%), Query Frame = 1 Query: 1 ESAALFDLLGHLGLGPSAAAKLEAGAGEAASLASFASVAWDARTQVAKARLALAAIRARRQAVLVLADEASSDLGRIEILQRTGRVGLAPARAAHGMVAALERRASVLAEMESVARAVLARAAGMTPD----DPALEQPGAELLLHLSEG----PLPAEPTGEGEL--RHPSLTEAHLEVALREARVRSAAAASWPGIGVGPHLSLPSGGLRDTIRVGGLFQVTLPLPSSWRGIMESRLELRAAAVEGYVDALVDLRSRARDAETRALEIQGR----SGFTAAVHHAAEDAWISARAGFRVGRVDLNLWIQALERQGNAITMPIDDLEALALAALDLEWAAGPEA 993
E+ +FDL+G LGLGPS A + A A + VA+++ V +AR+ + A R R Q + L + A++DL R+ IL+ R+ A A A VA LERR + A AR LAR +G PD P ++ G L ++ G P P L HP+L +A L A+REA VR AAA +WPG+G+GPHL G + ++G + + ++P PSSW+G +E+ +E R A+E + + LV R +A+ R +Q G T A W +AR FR GR W QAL G + PIDD+EALALA LD+ A GP A
Sbjct: 137 EAIGVFDLIGLLGLGPSRAERERASAETLLAAGRLEHVAFESWIAVERARIGVVATRLRWQRLAELIETATADLERVRILEENDRLSDADAGLARAEVARLERRQLLAAAALETARMELARLSGSVPDAGHFGPDVQAVGEAGLAEVAYGNVMDPWPPMENAPAFLADHHPALRQARLRFAVREAEVREAAARAWPGVGLGPHL-----GYLNHAQLGMIARFSIPFPSSWKGRLEAAVERRDRALEEFEETLVAFSGRLVEAKARLGSLQAAVDDDHGATRRATDPAIQHWEAARTRFRAGRGSAAGWTQALNHVGETLNWPIDDVEALALARLDVTAATGPGA 476
BLAST of mRNA_P-canaliculata_contig97915.23888.1 vs. uniprot
Match: A0A2D5XR75_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5XR75_9BACT) HSP 1 Score: 163 bits (412), Expect = 9.920e-43 Identity = 129/335 (38.51%), Postives = 184/335 (54.93%), Query Frame = 1 Query: 1 ESAALFDLLGHLGLGPSAAAKLEAGAGEAASLASFASVAWDARTQVAKARLALAAIRARRQAVLVLADEASSDLGRIEILQRTGRVGLAPARAAHGMVAALE----RRASVLAEMESVARAVLARAAGMTPDDPALEQPGAELLLHLSEGPLPAEPTGEGELR-HPSLTEAHLEVALREARVRSAAAASWPGIGVGPHLSLPSGGLRDTIRVGGLFQVTLPLPSSWRGIMESRLELRAAAVEGYVDALVDLRSRARDAETRALEIQGRSGFTA-AVHHAAEDAWISARAGFRVGRVDLNLWIQALERQGNAITMPIDDLEALALAALDLEWAAGP 987
ES A FDLLG LG+G SAA + +A + W AR V +AR+ LAA+RAR++ + VL E D+ R ILQ R+ A G+++A E ++ S+LA E+ R LA AAG+ D PAL++P + L L GP P+ L HP L L+VA EA++R+ AA++ PGI +GPHLS P G + +GG Q+TLPLPS WRG +E+ L R A ++ D L+ S AR A+ R E + R A AV +AA ++W + R FRVG+ W++AL+ Q A+ + ++ +A LD+ AGP
Sbjct: 138 ESVATFDLLGILGVGESAAEQAQADVRVLRARCRLEQELWSARFVVERARVRLAAVRARQELLRVLGTELREDMERFRILQLNRRLS----DAEWGLISAREDLLLQKLSLLASEEAALRHELAVAAGLPIDHPALDRPAIDALTDL--GPTVELPSSARLLETHPRLRYLRLDVAEAEAQLRTIAASAIPGIRMGPHLSWPGSGTQ----LGGALQLTLPLPSQWRGEIEAALIERTARIQQLEDELLSHGSLARTAQLRCEEARVRQEEHAVAVQNAASESWRATRLRFRVGQATSRDWLRALDAQMLAVVLGVNSTATEHIATLDVLELAGP 462
BLAST of mRNA_P-canaliculata_contig97915.23888.1 vs. uniprot
Match: A0A2E6DAK5_9BACT (Uncharacterized protein n=3 Tax=cellular organisms TaxID=131567 RepID=A0A2E6DAK5_9BACT) HSP 1 Score: 106 bits (264), Expect = 5.190e-22 Identity = 99/328 (30.18%), Postives = 157/328 (47.87%), Query Frame = 1 Query: 34 LGLGPSAAAK-------LEAGAGEAASLASFASVAWDARTQVAKARLALAAIRARRQAVLVLADEASSDLGRIEILQRTGRVGLAPARAAHGMVAALERRASVLAEMESVARAVLARAAGMTPDDPALEQPGAELLLHLSEGPLPAEPTGEGEL--RHPSLTEAHLEVALREARVRSAAAASWPGIGVGPHLSLPSGGLRDTIRVGGLFQVTLPLPSSWRGIMESRLELRAAAVEGYVDALVDLRSRARDAE-TRALEIQGRSGFTAAVHHAAEDAWISARAGFRVGRVDLNLWIQALERQGNAITMPIDDLEALALAALDLEWAAGP 987
LGLGP+ A + L+A +G A+L W +V ++R++LAA RAR A+ L + +D R+EIL GR+ A +L S L E+ A A+L+ +G+ P+L P +L G T G L RHP L + +A+ E ++R AA +WP + +GPH+SL + D +GGL Q+ LP PSSWRG +E+ RA +E +A ++ +R + + A + R + A+ A W ++RA G ++ W + + ++ + ID E LA +DL+ GP
Sbjct: 117 LGLGPAEAERELARTEVLQATSGLEAAL-------WSTCFKVERSRVSLAAARARYTALEQLQSDLQTDRVRLEILHAHGRLTAAAWEGVEARTHSLAAAVSRLRVQEAKAEALLSGVSGVPMGHPSLAVPVQAQILSADLGT-----TDAGGLLDRHPLLRRERITLAVAEVQLRRVAAKAWPEVRIGPHVSL----ITDAPTLGGLVQLQLPWPSSWRGELEATEARRARQLERIEEAYLEQLARIEQSRASHADALVQRDLHSPAMERGAAAMWGASRARLHEGEEPMSRWFDFFDNRLDSSHLVIDAWEQEQLARIDLQDHLGP 428 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97915.23888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig97915.23888.1 >prot_P-canaliculata_contig97915.23888.1 ID=prot_P-canaliculata_contig97915.23888.1|Name=mRNA_P-canaliculata_contig97915.23888.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=334bp ESAALFDLLGHLGLGPSAAAKLEAGAGEAASLASFASVAWDARTQVAKARback to top mRNA from alignment at P-canaliculata_contig97915:70..1071- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig97915.23888.1 ID=mRNA_P-canaliculata_contig97915.23888.1|Name=mRNA_P-canaliculata_contig97915.23888.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1002bp|location=Sequence derived from alignment at P-canaliculata_contig97915:70..1071- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig97915:70..1071- >mRNA_P-canaliculata_contig97915.23888.1 ID=mRNA_P-canaliculata_contig97915.23888.1|Name=mRNA_P-canaliculata_contig97915.23888.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2004bp|location=Sequence derived from alignment at P-canaliculata_contig97915:70..1071- (Pelvetia canaliculata dioecious)back to top |