mRNA_P-canaliculata_contig97848.23882.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig97848.23882.1
Unique NamemRNA_P-canaliculata_contig97848.23882.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig97848.23882.1 vs. uniprot
Match: A0A6C0D5K7_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0D5K7_9ZZZZ)

HSP 1 Score: 103 bits (256), Expect = 1.040e-23
Identity = 44/93 (47.31%), Postives = 67/93 (72.04%), Query Frame = 1
Query:    4 ARIKHGDNDGEFILPESRRWKADGYIAASNTVLEFHGTYWHGHPSVYQQDIVHPQDRQGRTYGTLYKNTLSREEMIRGWGYNLIVMWEHDWKR 282
              I+H  N GEF++P++R +KADGYI +SNT+ EFHG +WHG+P +Y +  ++   R G TYG LY  T+++ ++I   G+NLI +WE+DWK+
Sbjct:  427 TEIQHARNLGEFVIPDTR-YKADGYIKSSNTIFEFHGDFWHGNPELYDETDIN--SRVGITYGELYNQTIAKSKLIVEKGFNLIEVWENDWKK 516          
BLAST of mRNA_P-canaliculata_contig97848.23882.1 vs. uniprot
Match: A0A6C0H9F0_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0H9F0_9ZZZZ)

HSP 1 Score: 101 bits (252), Expect = 3.680e-23
Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = 1
Query:    4 ARIKHGDNDGEFILPESRRWKADGYIAASNTVLEFHGTYWHGHPSVYQQDIVHPQDRQGRTYGTLYKNTLSREEMIRGWGYNLIVMWEHDWKR 282
             +I H  N GE+I+P SR +KADGY    NT+ EFHG +WHG+P +Y ++ V+P  R G T+G LY+ TL +   I+   YNLI +WE+DWK+
Sbjct:  427 VKINHAQNKGEYIIPNSR-YKADGYSETINTIFEFHGDFWHGNPKLYNKNKVNP--RIGLTFGELYEKTLEKSNFIKDNVYNLIEIWENDWKK 516          
BLAST of mRNA_P-canaliculata_contig97848.23882.1 vs. uniprot
Match: A0A6C0EUH5_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0EUH5_9ZZZZ)

HSP 1 Score: 100 bits (249), Expect = 9.300e-23
Identity = 42/91 (46.15%), Postives = 61/91 (67.03%), Query Frame = 1
Query:   10 IKHGDNDGEFILPESRRWKADGYIAASNTVLEFHGTYWHGHPSVYQQDIVHPQDRQGRTYGTLYKNTLSREEMIRGWGYNLIVMWEHDWKR 282
            IKH +N  E  +P +  +K+DGY   +NT+ EFHG YWHG+P+ +    ++   +   T+G LY+NTL RE+ IR  GYNL++MWEHDW +
Sbjct:  422 IKHAENGNELSIPNTN-YKSDGYCEETNTIYEFHGDYWHGNPNKFISTEINKSTKT--TFGELYQNTLEREQQIRDLGYNLVIMWEHDWNK 509          
BLAST of mRNA_P-canaliculata_contig97848.23882.1 vs. uniprot
Match: G8DD29_9PHYC (Uncharacterized protein n=1 Tax=Micromonas pusilla virus PL1 TaxID=373997 RepID=G8DD29_9PHYC)

HSP 1 Score: 96.7 bits (239), Expect = 2.140e-21
Identity = 39/89 (43.82%), Postives = 58/89 (65.17%), Query Frame = 1
Query:   16 HGDNDGEFILPESRRWKADGYIAASNTVLEFHGTYWHGHPSVYQQDIVHPQDRQGRTYGTLYKNTLSREEMIRGWGYNLIVMWEHDWKR 282
            H   +GE+ +P+    K DGY   +NT+ EFHG +WHGHP  +  + VHP+ +  +TYG  Y+ TL R+E IR  GY L+++WEH+W +
Sbjct:  413 HMSEEGEYTIPDIG--KVDGYCHETNTIYEFHGIFWHGHPDFFDSNTVHPRIKS-KTYGEKYQETLDRDEKIRNLGYKLVIIWEHEWDK 498          
BLAST of mRNA_P-canaliculata_contig97848.23882.1 vs. uniprot
Match: A0A248SJ99_9CAUD (Uncharacterized protein n=1 Tax=Salicola phage SCTP-2 TaxID=2015814 RepID=A0A248SJ99_9CAUD)

HSP 1 Score: 86.3 bits (212), Expect = 3.120e-20
Identity = 37/81 (45.68%), Postives = 54/81 (66.67%), Query Frame = 1
Query:   40 ILPESRRWKADGYIAASNTVLEFHGTYWHGHPSVYQQDIVHPQDRQGRTYGTLYKNTLSREEMIRGWGYNLIVMWEHDWKR 282
            +LPE++    DG+   +NTV +FHG YWHG+P VY Q+  H    +  TY  LY+NT   +  I G+GYNL++MWE+D++R
Sbjct:    1 MLPENKNLIVDGFDPETNTVYQFHGDYWHGNPDVYDQNRTH--GHRNVTYRELYENTKRIDNEIEGYGYNLVIMWENDYRR 79          
BLAST of mRNA_P-canaliculata_contig97848.23882.1 vs. uniprot
Match: A0A1X6WF38_9VIRU (Probable Zinc-ribbon domain-containing protein n=2 Tax=unclassified viruses TaxID=12429 RepID=A0A1X6WF38_9VIRU)

HSP 1 Score: 93.2 bits (230), Expect = 3.170e-20
Identity = 41/92 (44.57%), Postives = 63/92 (68.48%), Query Frame = 1
Query:    1 GARIKHGDNDGEFILPESRRWKADGYIAASNTVLEFHGTYWHGHPSVYQQDIVHPQDRQGRTYGTLYKNTLSREEMIRGWGYNLIVMWEHDW 276
            G +I+H ++ GE+ +PE+  ++ADGY   +NT+ EFHG+++HG P +Y  D      +  +TYG LY+ TL +E+ IR  GYNL+V+WE DW
Sbjct:  372 GIKIQHAESGGEYKIPETN-YRADGYCKETNTIYEFHGSFYHGDPRIYNADEYCSFAK--KTYGELYQKTLVKEQKIRELGYNLVVIWELDW 460          
BLAST of mRNA_P-canaliculata_contig97848.23882.1 vs. uniprot
Match: A0A3G4ZRH9_9VIRU (Uncharacterized protein n=1 Tax=Terrestrivirus sp. TaxID=2487775 RepID=A0A3G4ZRH9_9VIRU)

HSP 1 Score: 90.5 bits (223), Expect = 3.520e-19
Identity = 38/93 (40.86%), Postives = 60/93 (64.52%), Query Frame = 1
Query:    4 ARIKHGDNDGEFILPESRRWKADGYIAASNTVLEFHGTYWHGHPSVYQQDIVHPQDRQGRTYGTLYKNTLSREEMIRGWGYNLIVMWEHDWKR 282
             +I+H +N+GEF +PE++ + ADGY   +NT+ EFHGTY HG P +Y ++I++       T G LY  T  +E  I+  GY+L+ +WE +W +
Sbjct:  469 VKIQHAENEGEFRIPETK-YSADGYCKETNTIYEFHGTYHHGAPHIYDKNIINKM--HNCTMGELYDKTCEKENTIKNLGYDLVTIWEDEWDK 558          
BLAST of mRNA_P-canaliculata_contig97848.23882.1 vs. uniprot
Match: A0A7D3UF21_9VIRU (Uncharacterized protein n=1 Tax=Faustovirus TaxID=1477405 RepID=A0A7D3UF21_9VIRU)

HSP 1 Score: 89.0 bits (219), Expect = 1.150e-18
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 1
Query:   10 IKHGDNDGEFILPESRRWKADGYIAASN--TVLEFHGTYWHGHPSVYQQDIVHPQDRQGRTYGTLYKNTLSREEMIRGWGYNLIVMWEHDWK 279
            I+H   D EF +P +R W ADGY+   +   +LE+HGT+WHGH   +  D  +   + G+T+G  Y NT++RE MI   GY LIV+WEH++K
Sbjct:  395 IRHKPQDIEFKVPGTR-WHADGYVKIGDIEVILEYHGTFWHGHKDFFDPDEFNT--KLGKTFGEAYNNTIARERMITQMGYRLIVIWEHEYK 483          
BLAST of mRNA_P-canaliculata_contig97848.23882.1 vs. uniprot
Match: A0A4Q0AVZ5_9BACT (Uncharacterized protein n=1 Tax=Hydrotalea sp. AMD TaxID=2501297 RepID=A0A4Q0AVZ5_9BACT)

HSP 1 Score: 82.0 bits (201), Expect = 1.290e-16
Identity = 37/91 (40.66%), Postives = 60/91 (65.93%), Query Frame = 1
Query:   10 IKHGDNDGEFILPESRRWKADGYIAASNTVLEFHGTYWHGHPSVYQQDIVHPQDRQGRTYGTLYKNTLSREEMIRGWGYNLIVMWEHDWKR 282
            I+H  N GE+ +P +R +  DG+   +NTV EF+G YWHG+P+++    ++  +    T G LY+ T+ +E++IR  GYNLI +WE D+K+
Sbjct:  215 IQHMLNGGEYRIPNTRYY-VDGFCVETNTVYEFYGDYWHGNPNIFDPHEINATNYV--TMGELYQRTVKKEQIIRDLGYNLIFIWESDYKK 302          
BLAST of mRNA_P-canaliculata_contig97848.23882.1 vs. uniprot
Match: A0A6M6DJI1_9VIRU (Zinc-ribbon domain protein n=1 Tax=Faustovirus TaxID=1477405 RepID=A0A6M6DJI1_9VIRU)

HSP 1 Score: 77.8 bits (190), Expect = 1.020e-14
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 1
Query:   34 EFILPESRRWKADGY--IAASNTVLEFHGTYWHGHPSVYQQDIVHPQDRQGRTYGTLYKNTLSREEMIRGWGYNLIVMWEHDWKR 282
            EF +P +  + ADGY  I     + EFHGT+WHGH   Y  D  +P +  G+ +G +Y +TL++E  IR  GY LIV+WEHD+K+
Sbjct:  405 EFKIPGTGYF-ADGYACIGDREIIFEFHGTFWHGHKDFYDPDDTNPIN--GKRFGDIYNDTLTKEHTIRQLGYVLIVIWEHDYKK 486          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97848.23882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6C0D5K7_9ZZZZ1.040e-2347.31Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0H9F0_9ZZZZ3.680e-2348.39Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0EUH5_9ZZZZ9.300e-2346.15Uncharacterized protein n=1 Tax=viral metagenome T... [more]
G8DD29_9PHYC2.140e-2143.82Uncharacterized protein n=1 Tax=Micromonas pusilla... [more]
A0A248SJ99_9CAUD3.120e-2045.68Uncharacterized protein n=1 Tax=Salicola phage SCT... [more]
A0A1X6WF38_9VIRU3.170e-2044.57Probable Zinc-ribbon domain-containing protein n=2... [more]
A0A3G4ZRH9_9VIRU3.520e-1940.86Uncharacterized protein n=1 Tax=Terrestrivirus sp.... [more]
A0A7D3UF21_9VIRU1.150e-1844.57Uncharacterized protein n=1 Tax=Faustovirus TaxID=... [more]
A0A4Q0AVZ5_9BACT1.290e-1640.66Uncharacterized protein n=1 Tax=Hydrotalea sp. AMD... [more]
A0A6M6DJI1_9VIRU1.020e-1444.71Zinc-ribbon domain protein n=1 Tax=Faustovirus Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig97848contigP-canaliculata_contig97848:793..1074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score74.3
Seed ortholog evalue3.3e-11
Seed eggNOG ortholog7070.TC010233-PA
EggNOG OGs2CMGD@1,2QQ9V@2759,39B3J@33154,3BKG5@33208,3CTR5@33213,3SQAF@50557,41V8V@6656
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817341.1347861-CDS-P-canaliculata_contig97848:792..10741622817341.1347861-CDS-P-canaliculata_contig97848:792..1074Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97848 793..1074 -
1693495234.2454193-CDS-P-canaliculata_contig97848:792..10741693495234.2454193-CDS-P-canaliculata_contig97848:792..1074Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97848 793..1074 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig97848.23882.1prot_P-canaliculata_contig97848.23882.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig97848 793..1074 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig97848.23882.1

>prot_P-canaliculata_contig97848.23882.1 ID=prot_P-canaliculata_contig97848.23882.1|Name=mRNA_P-canaliculata_contig97848.23882.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=94bp
GARIKHGDNDGEFILPESRRWKADGYIAASNTVLEFHGTYWHGHPSVYQQ
DIVHPQDRQGRTYGTLYKNTLSREEMIRGWGYNLIVMWEHDWKR
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mRNA from alignment at P-canaliculata_contig97848:793..1074-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig97848.23882.1 ID=mRNA_P-canaliculata_contig97848.23882.1|Name=mRNA_P-canaliculata_contig97848.23882.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=282bp|location=Sequence derived from alignment at P-canaliculata_contig97848:793..1074- (Pelvetia canaliculata dioecious)
GGTGCGCGAATCAAGCATGGCGACAATGACGGCGAGTTTATCCTTCCTGA GAGTAGACGTTGGAAGGCCGACGGGTATATTGCGGCAAGCAACACCGTCT TGGAATTCCACGGAACGTACTGGCACGGGCATCCTTCGGTGTATCAACAG GACATCGTTCACCCGCAAGACCGACAGGGTAGAACATACGGCACCCTCTA CAAAAACACGCTGTCACGCGAAGAGATGATCCGAGGCTGGGGTTATAACC TGATTGTTATGTGGGAGCACGACTGGAAGAGG
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Coding sequence (CDS) from alignment at P-canaliculata_contig97848:793..1074-

>mRNA_P-canaliculata_contig97848.23882.1 ID=mRNA_P-canaliculata_contig97848.23882.1|Name=mRNA_P-canaliculata_contig97848.23882.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at P-canaliculata_contig97848:793..1074- (Pelvetia canaliculata dioecious)
GGTGCGCGAATCAAGCATGGCGACAATGACGGCGAGTTTATCCTTCCTGA
GAGTAGACGTTGGAAGGCCGACGGGTATATTGCGGCAAGCAACACCGTCT
TGGAATTCCACGGAACGTACTGGCACGGGCATCCTTCGGTGTATCAACAG
GACATCGTTCACCCGCAAGACCGACAGGGTAGAACATACGGCACCCTCTA
CAAAAACACGCTGTCACGCGAAGAGATGATCCGAGGCTGGGGTTATAACC
TGATTGTTATGTGGGAGCACGACTGGAAGAGGGGTGCGCGAATCAAGCAT
GGCGACAATGACGGCGAGTTTATCCTTCCTGAGAGTAGACGTTGGAAGGC
CGACGGGTATATTGCGGCAAGCAACACCGTCTTGGAATTCCACGGAACGT
ACTGGCACGGGCATCCTTCGGTGTATCAACAGGACATCGTTCACCCGCAA
GACCGACAGGGTAGAACATACGGCACCCTCTACAAAAACACGCTGTCACG
CGAAGAGATGATCCGAGGCTGGGGTTATAACCTGATTGTTATGTGGGAGC
ACGACTGGAAGAGG
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