mRNA_P-canaliculata_contig97776.23877.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig97776.23877.1
Unique NamemRNA_P-canaliculata_contig97776.23877.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig97776.23877.1 vs. uniprot
Match: UPI0016752408 (efflux RND transporter permease subunit n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI0016752408)

HSP 1 Score: 573 bits (1478), Expect = 2.340e-194
Identity = 305/359 (84.96%), Postives = 337/359 (93.87%), Query Frame = 1
Query:    1 RLELQRAGNDLRLKLTQLPGLQLTNQISKVPEQVTIEISETALRRYNLTFNEVSQAISGSSVNLSAGTVETTGGNLQLRARNLADSQEEFEKIIIRQSANGGVVTVGDVANVIDGFDDDKFSASFRGQPAAVFQVLSPDTMNITEAGEAIRKFEEEIQESLPSNLQFSIWFDGSTVFDSRMDLISGNALSGMVLVLIILMLFLRPKVAIWVTVGIAAAFAGALAIAPMIGVTLNMISLFAFLLVIGIVVDDAIVVGESVHFHVENGISGERGAVAGANMVVKPVYFAVITTIMMFVPMMLLSGPIRTMFEQISLVVIAVLVFSLIEAFFILPAHLRHLKPVDPQEVKGLLKFQHNLAES 1077
            RL LQRA NDLRLKLTQLPGLQLT Q++K+PEQVTIEISE AL RYNLTFN+VSQAISGSSVNLSAGTVETTGGNLQLRARNLADS+ +FE II+RQ+ +GG+V +GDVANVIDGFDD+KF+A+FRGQPAA+F+VLSP+T NITEAG AIRKFEE+IQ+SLP N+ FSIW DGST+FDSRM LISGNALSGM LVLI+LMLFLRPKVAIWVT+GIAAAFAGALA+AP IG+TLNMISLFAFLLVIGIVVDDAIVVGES+HFHVENGI GERGA+AGA MV+KPVYFAVITTIMMFVPMMLLSGPIR+MFEQISLVVIAVLVFSLIEAFFILPAHLRHLKPVDP +V G++KFQH LAES
Sbjct:  148 RLTLQRAANDLRLKLTQLPGLQLTEQMTKIPEQVTIEISEDALLRYNLTFNQVSQAISGSSVNLSAGTVETTGGNLQLRARNLADSKADFENIIVRQTPSGGIVRIGDVANVIDGFDDNKFAATFRGQPAAIFRVLSPETSNITEAGNAIRKFEEDIQDSLPPNMTFSIWVDGSTMFDSRMSLISGNALSGMALVLIVLMLFLRPKVAIWVTLGIAAAFAGALAVAPAIGITLNMISLFAFLLVIGIVVDDAIVVGESIHFHVENGIDGERGAIAGAGMVMKPVYFAVITTIMMFVPMMLLSGPIRSMFEQISLVVIAVLVFSLIEAFFILPAHLRHLKPVDPNKVTGIMKFQHRLAES 506          
BLAST of mRNA_P-canaliculata_contig97776.23877.1 vs. uniprot
Match: UPI00040FE160 (efflux RND transporter permease subunit n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI00040FE160)

HSP 1 Score: 511 bits (1315), Expect = 5.610e-170
Identity = 275/359 (76.60%), Postives = 315/359 (87.74%), Query Frame = 1
Query:    1 RLELQRAGNDLRLKLTQLPGLQLTNQISKVPEQVTIEISETALRRYNLTFNEVSQAISGSSVNLSAGTVETTGGNLQLRARNLADSQEEFEKIIIRQSANGGVVTVGDVANVIDGFDDDKFSASFRGQPAAVFQVLSPDTMNITEAGEAIRKFEEEIQESLPSNLQFSIWFDGSTVFDSRMDLISGNALSGMVLVLIILMLFLRPKVAIWVTVGIAAAFAGALAIAPMIGVTLNMISLFAFLLVIGIVVDDAIVVGESVHFHVENGISGERGAVAGANMVVKPVYFAVITTIMMFVPMMLLSGPIRTMFEQISLVVIAVLVFSLIEAFFILPAHLRHLKPVDPQEVKGLLKFQHNLAES 1077
            RL LQR  N+LRL+LT+L GLQLT QISK+PEQVTIE+SE AL+RY LTF +V+QAISG+SVN SAGTVET+GGNLQLRARNLAD++ +FEKII+RQ+A GG V VGD+A VIDGFDDDKF+A+FRGQPAA+F+V SPD M+IT +GEAIRKFE+EI E LP +L F IWFDGST+FDSRMDLI GNALSGMVLVLI LMLFLRP VA+WVTVGIAAAF G+LAIA  IGVTLNMISLFAFLLVIGIVVDDAIVVGES +FHVENGISGERGA+AGANMV KPV+FAVITTIMMF+P +L++GP  ++  QISLVVIAVL FSL+EAFFILPAHLRHLKP+D  E   L++FQ  LA S
Sbjct:  148 RLTLQREANELRLELTKLTGLQLTEQISKIPEQVTIEVSEDALKRYGLTFTQVAQAISGTSVNQSAGTVETSGGNLQLRARNLADNKADFEKIIVRQTAQGGTVRVGDIAKVIDGFDDDKFAATFRGQPAAIFRVSSPDKMDITSSGEAIRKFEKEINEKLPPDLNFGIWFDGSTMFDSRMDLIGGNALSGMVLVLITLMLFLRPAVAVWVTVGIAAAFVGSLAIAGAIGVTLNMISLFAFLLVIGIVVDDAIVVGESAYFHVENGISGERGAIAGANMVAKPVFFAVITTIMMFIPFLLMTGPFASILAQISLVVIAVLCFSLLEAFFILPAHLRHLKPIDHDEQGRLMRFQSKLAGS 506          
BLAST of mRNA_P-canaliculata_contig97776.23877.1 vs. uniprot
Match: UPI00035E892F (efflux RND transporter permease subunit n=1 Tax=Robiginitomaculum antarcticum TaxID=437507 RepID=UPI00035E892F)

HSP 1 Score: 486 bits (1251), Expect = 1.690e-160
Identity = 258/359 (71.87%), Postives = 308/359 (85.79%), Query Frame = 1
Query:    1 RLELQRAGNDLRLKLTQLPGLQLTNQISKVPEQVTIEISETALRRYNLTFNEVSQAISGSSVNLSAGTVETTGGNLQLRARNLADSQEEFEKIIIRQSANGGVVTVGDVANVIDGFDDDKFSASFRGQPAAVFQVLSPDTMNITEAGEAIRKFEEEIQESLPSNLQFSIWFDGSTVFDSRMDLISGNALSGMVLVLIILMLFLRPKVAIWVTVGIAAAFAGALAIAPMIGVTLNMISLFAFLLVIGIVVDDAIVVGESVHFHVENGISGERGAVAGANMVVKPVYFAVITTIMMFVPMMLLSGPIRTMFEQISLVVIAVLVFSLIEAFFILPAHLRHLKPVDPQEVKGLLKFQHNLAES 1077
            RL LQR GND+RLKLT LPGLQLTNQ+SK+PEQVTIE+SE  LRRY+LTF++VSQAISG+SVNLSAG+VET+ GNLQLRAR+LADS+ +FE I++RQ+ +GG V V D+A VIDGFDD+KF+A FRG+P A+FQVLSPDT NIT+AG+ IR+FE  IQ+SLP  + FSIWFDGS + DSRM+LI  NAL G++LVLI L+LFLRP VA WVT+GIA  FAGA+A+AP +G++LNMISLFAFLLVIGIVVDDAIVVGES HFH ENGI G  GA+ GANMVVKPV+FAVITTIMMFVP ML++GP+ ++  QISLVVIAVLVFSLIEAFFILPAHLRHLKP+   ++  ++KFQ  LA S
Sbjct:  148 RLTLQRLGNDIRLKLTNLPGLQLTNQVSKLPEQVTIEVSEEDLRRYDLTFSQVSQAISGASVNLSAGSVETSSGNLQLRARSLADSKADFENIVVRQTPDGGKVYVRDIATVIDGFDDEKFNAEFRGEPTAIFQVLSPDTSNITQAGKEIREFERNIQDSLPPGVSFSIWFDGSKMVDSRMNLIGSNALFGLLLVLITLLLFLRPAVAFWVTIGIATTFAGAIAVAPYLGISLNMISLFAFLLVIGIVVDDAIVVGESAHFHNENGIGGAAGAIGGANMVVKPVFFAVITTIMMFVPWMLITGPMNSITSQISLVVIAVLVFSLIEAFFILPAHLRHLKPIKHDKLGPVMKFQQGLANS 506          
BLAST of mRNA_P-canaliculata_contig97776.23877.1 vs. uniprot
Match: A0A520XRU6_9ACTN (Efflux RND transporter permease subunit n=2 Tax=Bacteria TaxID=2 RepID=A0A520XRU6_9ACTN)

HSP 1 Score: 480 bits (1235), Expect = 4.370e-158
Identity = 254/359 (70.75%), Postives = 314/359 (87.47%), Query Frame = 1
Query:    1 RLELQRAGNDLRLKLTQLPGLQLTNQISKVPEQVTIEISETALRRYNLTFNEVSQAISGSSVNLSAGTVETTGGNLQLRARNLADSQEEFEKIIIRQSANGGVVTVGDVANVIDGFDDDKFSASFRGQPAAVFQVLSPDTMNITEAGEAIRKFEEEIQESLPSNLQFSIWFDGSTVFDSRMDLISGNALSGMVLVLIILMLFLRPKVAIWVTVGIAAAFAGALAIAPMIGVTLNMISLFAFLLVIGIVVDDAIVVGESVHFHVENGISGERGAVAGANMVVKPVYFAVITTIMMFVPMMLLSGPIRTMFEQISLVVIAVLVFSLIEAFFILPAHLRHLKPVDPQEVKGLLKFQHNLAES 1077
            RL LQRA  DLRL++T+L GLQLT QISKVPEQVTIEI+E  LR+Y+LTF++V+ AIS SSVNLSAGTVETTGGNLQLRAR+LA+S+ EFE+II+RQ+++GG + V D+ANVID F+ DKF+A F+G+  A+FQVLSPD MNIT+AGEAIRK+E+EI E LP +L FSIWFDGST+ DSR++LI  NAL G++LVL IL+LFLRP VAIWVT+GI+AAFAGA+AIAP IG++LNMISLFAFLLVIGIVVDDAIVVGES HFH ENGISG  GA++GANMVVKPV+FAVITTI+MF P + ++GP++ +  QISLVVIAVL+FSLIEAFFILPAHLRHLKP++  ++  L+K Q+++A++
Sbjct:  148 RLALQRAATDLRLEITRLTGLQLTRQISKVPEQVTIEIAEDKLRQYDLTFSQVANAISRSSVNLSAGTVETTGGNLQLRARSLANSKAEFEEIIVRQTSSGGTIRVKDIANVIDRFETDKFNAQFKGENTAIFQVLSPDEMNITKAGEAIRKYEKEINEKLPPDLTFSIWFDGSTMVDSRLNLIGSNALQGLILVLAILLLFLRPAVAIWVTIGISAAFAGAIAIAPHIGISLNMISLFAFLLVIGIVVDDAIVVGESAHFHSENGISGANGAISGANMVVKPVFFAVITTILMFTPFLFMTGPLQAILGQISLVVIAVLIFSLIEAFFILPAHLRHLKPIEHDKLSPLMKLQNSIAQT 506          
BLAST of mRNA_P-canaliculata_contig97776.23877.1 vs. uniprot
Match: A0A8J3CPS5_9PROT (Acriflavin resistance protein n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3CPS5_9PROT)

HSP 1 Score: 462 bits (1189), Expect = 2.880e-151
Identity = 255/359 (71.03%), Postives = 298/359 (83.01%), Query Frame = 1
Query:    1 RLELQRAGNDLRLKLTQLPGLQLTNQISKVPEQVTIEISETALRRYNLTFNEVSQAISGSSVNLSAGTVETTGGNLQLRARNLADSQEEFEKIIIRQSANGGVVTVGDVANVIDGFDDDKFSASFRGQPAAVFQVLSPDTMNITEAGEAIRKFEEEIQESLPSNLQFSIWFDGSTVFDSRMDLISGNALSGMVLVLIILMLFLRPKVAIWVTVGIAAAFAGALAIAPMIGVTLNMISLFAFLLVIGIVVDDAIVVGESVHFHVENGISGERGAVAGANMVVKPVYFAVITTIMMFVPMMLLSGPIRTMFEQISLVVIAVLVFSLIEAFFILPAHLRHLKPVDPQEVKGLLKFQHNLAES 1077
            RL LQR    LR +L++LPGLQLT+QISK+ EQVTIEISE AL RY LTF++VSQAISG+SVNLSAG          LRARNLAD+ +EF  IIIRQ+A GG V V D+ANVIDGF +D F A F+GQPAA+FQV+SPD MNIT++GEAIR+FE++++  LP +  FSIWFDGST+FDSRM+LI GNALSGMVLVLIILMLFLRPKVAIWVTVGI AAF GA+AIAP IG+TLNMISLFAFLLVIGIVVDDAIVVGES+H H ENGI GER AV GA MV KPV+FAV+TTI+MF+P + +SGPI+ +F QISLVVIAVL+FSLIEAFFILPAHLRH+K V+P   + LL  Q  +A+S
Sbjct:  148 RLTLQREATQLRQELSKLPGLQLTSQISKLDEQVTIEISEEALLRYGLTFSQVSQAISGASVNLSAGXXXXXXXXXXLRARNLADNSDEFNNIIIRQTAQGGTVRVRDIANVIDGFAEDDFDAKFKGQPAAIFQVVSPDEMNITKSGEAIRQFEKDVRAKLPPDFNFSIWFDGSTMFDSRMELIGGNALSGMVLVLIILMLFLRPKVAIWVTVGIGAAFMGAIAIAPHIGITLNMISLFAFLLVIGIVVDDAIVVGESIHLHNENGIEGERAAVGGAYMVAKPVFFAVVTTIIMFLPFLFMSGPIQAIFSQISLVVIAVLIFSLIEAFFILPAHLRHMKHVEPTSNR-LLSLQTKIADS 505          
BLAST of mRNA_P-canaliculata_contig97776.23877.1 vs. uniprot
Match: A0A420WDF2_9PROT (Multidrug efflux pump subunit AcrB n=1 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WDF2_9PROT)

HSP 1 Score: 454 bits (1167), Expect = 5.430e-148
Identity = 255/359 (71.03%), Postives = 297/359 (82.73%), Query Frame = 1
Query:    1 RLELQRAGNDLRLKLTQLPGLQLTNQISKVPEQVTIEISETALRRYNLTFNEVSQAISGSSVNLSAGTVETTGGNLQLRARNLADSQEEFEKIIIRQSANGGVVTVGDVANVIDGFDDDKFSASFRGQPAAVFQVLSPDTMNITEAGEAIRKFEEEIQESLPSNLQFSIWFDGSTVFDSRMDLISGNALSGMVLVLIILMLFLRPKVAIWVTVGIAAAFAGALAIAPMIGVTLNMISLFAFLLVIGIVVDDAIVVGESVHFHVENGISGERGAVAGANMVVKPVYFAVITTIMMFVPMMLLSGPIRTMFEQISLVVIAVLVFSLIEAFFILPAHLRHLKPVDPQEVKGLLKFQHNLAES 1077
            RL LQR    LR KLT+LPGLQLT+Q++KVPEQVTIEISE ALRRYNLTF++V+ AISGSSVNLSAGTVETTGGNLQLRAR+LA+S EEFE+II+RQ+++GG V V D+A+VIDGF+ D FSA FRG+  A+FQVLSPD MNIT++G+AIR+FE++I+ SLP NL F+I FDGST+FDSRM+LI  NALSGM+LVLI LMLFLRP V                   P IG+TLNMISLFAFLLVIGIVVDDAIVVGES+HFHVENG+ G+RGAVAGA MV KPV+FAVITTIMMF+P MLL+GPIR +  QISLVVIAVLVFSL+EAFFILPAHLRHLK  +      LL+FQ+ LAES
Sbjct:  148 RLTLQREATALRQKLTKLPGLQLTSQVTKVPEQVTIEISEEALRRYNLTFSQVATAISGSSVNLSAGTVETTGGNLQLRARSLANSAEEFEQIIVRQTSDGGTVRVRDIASVIDGFETDDFSARFRGKETAIFQVLSPDEMNITKSGDAIRQFEKDIRNSLPPNLDFAIHFDGSTMFDSRMNLIGSNALSGMILVLITLMLFLRPAVXXXXXXXXXXXXXXXXXXXPSIGITLNMISLFAFLLVIGIVVDDAIVVGESIHFHVENGVQGQRGAVAGAYMVAKPVFFAVITTIMMFIPFMLLTGPIRAITAQISLVVIAVLVFSLLEAFFILPAHLRHLKH-EKSSNNRLLRFQNRLAES 505          
BLAST of mRNA_P-canaliculata_contig97776.23877.1 vs. uniprot
Match: A0A848V7U8_9PROT (Efflux RND transporter permease subunit n=1 Tax=Hellea sp. TaxID=2715692 RepID=A0A848V7U8_9PROT)

HSP 1 Score: 434 bits (1116), Expect = 1.500e-140
Identity = 237/359 (66.02%), Postives = 296/359 (82.45%), Query Frame = 1
Query:    1 RLELQRAGNDLRLKLTQLPGLQLTNQISKVPEQVTIEISETALRRYNLTFNEVSQAISGSSVNLSAGTVETTGGNLQLRARNLADSQEEFEKIIIRQSANGGVVTVGDVANVIDGFDDDKFSASFRGQPAAVFQVLSPDTMNITEAGEAIRKFEEEIQESLPSNLQFSIWFDGSTVFDSRMDLISGNALSGMVLVLIILMLFLRPKVAIWVTVGIAAAFAGALAIAPMIGVTLNMISLFAFLLVIGIVVDDAIVVGESVHFHVENGISGERGAVAGANMVVKPVYFAVITTIMMFVPMMLLSGPIRTMFEQISLVVIAVLVFSLIEAFFILPAHLRHLKPVDPQEVKGLLKFQHNLAES 1077
            RL LQR   + RL+LT+LPG QLTN ISKVPEQVTIEISE AL++Y LTFN+V+ AISG+SVNLSAGT++TTGGN+Q+RAR LA+S+E+F+ II+RQ+A+G VV +GD+ANVIDGF+ +KF +S+  + AAVFQV+ P+ ++ITE+G+AIR+F+E + E LP +++F IW D S +FDSRM LIS NAL GMVLVLI+L LFLRP VA WVT+GI AAF GALA+AP IGVTLNM+SLFAFLLVIGIVVDDAIVVGE+ +FHVENG+ G+  A+ GA++VVKPVYFAVITTI+MF+P++ LSG        ISLVVIAVL FSLIEAFFILPAHLRHLK     ++  L +FQ  +A+S
Sbjct:  149 RLALQRLATEKRLELTELPGFQLTNFISKVPEQVTIEISEEALQQYGLTFNQVANAISGASVNLSAGTIQTTGGNVQIRARALANSKEQFDNIIVRQTASGAVVRLGDIANVIDGFETEKFKSSYNRKDAAVFQVIQPEKIDITESGKAIREFKEVLNEELPPDIRFDIWADMSGMFDSRMKLISSNALMGMVLVLIMLTLFLRPMVAFWVTIGIGAAFMGALAVAPFIGVTLNMMSLFAFLLVIGIVVDDAIVVGEAAYFHVENGVEGDDAAIGGASLVVKPVYFAVITTILMFLPILFLSGNNGDFLAPISLVVIAVLTFSLIEAFFILPAHLRHLKHRS-SDMNALFRFQKRIADS 506          
BLAST of mRNA_P-canaliculata_contig97776.23877.1 vs. uniprot
Match: A0A2G2GJ01_9PROT (RND transporter n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2GJ01_9PROT)

HSP 1 Score: 413 bits (1062), Expect = 1.630e-132
Identity = 221/335 (65.97%), Postives = 283/335 (84.48%), Query Frame = 1
Query:    1 RLELQRAGNDLRLKLTQLPGLQLTNQISKVPEQVTIEISETALRRYNLTFNEVSQAISGSSVNLSAGTVETTGGNLQLRARNLADSQEEFEKIIIRQSANGGVVTVGDVANVIDGFDDDKFSASFRGQPAAVFQVLSPDTMNITEAGEAIRKFEEEIQESLPSNLQFSIWFDGSTVFDSRMDLISGNALSGMVLVLIILMLFLRPKVAIWVTVGIAAAFAGALAIAPMIGVTLNMISLFAFLLVIGIVVDDAIVVGESVHFHVENGISGERGAVAGANMVVKPVYFAVITTIMMFVPMMLLSGPIRTMFEQISLVVIAVLVFSLIEAFFILPAHL 1005
            RL LQR  ND+R ++ ++PG QLT+ ISK+ E+VTIEI+E ALRRY LTF EV+ AISGSSVNLSAGTVET+ GN Q++ARNLA+++++FE+IIIRQ+ +GG + + D+ANVID F+D +FSA+F+GQ A +FQV++PD++N+TEAG+  R + ++  + LP  ++ S+WFDGSTVFDSRM LI  NAL+GM+LVLIIL+LFLRP VAIWVT+GI  +FAGALA+ P +GV+LNMIS FA LLVIGIVVDDAIVVGES+HFHVE+GI GE+ A++G NMV+KPV+FAV+TTIM F+P MLLSGP+  +  QI+LVVIA LVFSLIEAFFILPAHL
Sbjct:  148 RLTLQRLTNDIRDEMAKIPGGQLTSDISKLEEEVTIEITEEALRRYGLTFREVAAAISGSSVNLSAGTVETSSGNFQMKARNLANTKDQFEQIIIRQTPDGGKIYLKDIANVIDRFEDFEFSATFKGQTATMFQVVTPDSINVTEAGKGFRDYIKQKNKELPPGVELSMWFDGSTVFDSRMSLIGRNALTGMLLVLIILVLFLRPAVAIWVTIGILVSFAGALAVLPYLGVSLNMISTFAILLVIGIVVDDAIVVGESIHFHVEHGIEGEQAAISGTNMVIKPVFFAVVTTIMTFMPWMLLSGPMVAVTRQITLVVIAALVFSLIEAFFILPAHL 482          
BLAST of mRNA_P-canaliculata_contig97776.23877.1 vs. uniprot
Match: A0A7C3CBC2_9PROT (Efflux RND transporter permease subunit n=1 Tax=Hellea balneolensis TaxID=287478 RepID=A0A7C3CBC2_9PROT)

HSP 1 Score: 399 bits (1025), Expect = 5.090e-127
Identity = 214/359 (59.61%), Postives = 285/359 (79.39%), Query Frame = 1
Query:    1 RLELQRAGNDLRLKLTQLPGLQLTNQISKVPEQVTIEISETALRRYNLTFNEVSQAISGSSVNLSAGTVETTGGNLQLRARNLADSQEEFEKIIIRQSANGGVVTVGDVANVIDGFDDDKFSASFRGQPAAVFQVLSPDTMNITEAGEAIRKFEEEIQESLPSNLQFSIWFDGSTVFDSRMDLISGNALSGMVLVLIILMLFLRPKVAIWVTVGIAAAFAGALAIAPMIGVTLNMISLFAFLLVIGIVVDDAIVVGESVHFHVENGISGERGAVAGANMVVKPVYFAVITTIMMFVPMMLLSGPIRTMFEQISLVVIAVLVFSLIEAFFILPAHLRHLKPVDPQEVKGLL-KFQHNLAE 1074
            R+ LQR   D+R ++T++PG QL  +++K+ E+VTIEI+E ALRRYNLTF +V+ AISG+SVNLSAG V+T+ G LQL+ARNLA+++EEF +I++RQS++GG V + D+A++ID FDD  FSA+++G+PA  FQVL+PDT+N++EAG+  R + E   + LPS +  S+WFDGST FD+RMDLI  NA+ G+VLVL++L+LFLRP VA WVT GI  +FAGA+A+ PM+GV+LNM+S FA LLVIGIVVDDAIVVGES+H HVE+GI+  RGAVAG +MV+KPV+FAVITTIM F+P M+L+GP+ T+  QI+LVV+A L+FSLIEAFFILPAHL            G   +FQ  LA+
Sbjct:  148 RMSLQRLAQDVRDEMTKIPGGQLIRELTKLDEEVTIEITEEALRRYNLTFQQVAAAISGTSVNLSAGEVKTSSGKLQLKARNLANTKEEFGRIVVRQSSDGGRVLLRDIAHIIDDFDDVDFSATYKGEPAVFFQVLTPDTINVSEAGKGFRDYIEAKNKDLPSGVTLSMWFDGSTEFDARMDLIGSNAVMGLVLVLVLLILFLRPAVAFWVTTGILVSFAGAMAVMPMVGVSLNMMSTFAILLVIGIVVDDAIVVGESIHLHVEHGITETRGAVAGTSMVIKPVFFAVITTIMTFMPWMMLTGPMVTITRQITLVVMAALIFSLIEAFFILPAHLAXXXXXXXXXXXGRFSRFQRKLAD 506          
BLAST of mRNA_P-canaliculata_contig97776.23877.1 vs. uniprot
Match: A0A2G2J2V8_9PROT (RND transporter n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2J2V8_9PROT)

HSP 1 Score: 394 bits (1012), Expect = 4.580e-125
Identity = 211/335 (62.99%), Postives = 275/335 (82.09%), Query Frame = 1
Query:    1 RLELQRAGNDLRLKLTQLPGLQLTNQISKVPEQVTIEISETALRRYNLTFNEVSQAISGSSVNLSAGTVETTGGNLQLRARNLADSQEEFEKIIIRQSANGGVVTVGDVANVIDGFDDDKFSASFRGQPAAVFQVLSPDTMNITEAGEAIRKFEEEIQESLPSNLQFSIWFDGSTVFDSRMDLISGNALSGMVLVLIILMLFLRPKVAIWVTVGIAAAFAGALAIAPMIGVTLNMISLFAFLLVIGIVVDDAIVVGESVHFHVENGISGERGAVAGANMVVKPVYFAVITTIMMFVPMMLLSGPIRTMFEQISLVVIAVLVFSLIEAFFILPAHL 1005
            RL LQR  ND+R ++ ++PG +L   ISK+ E+VTIEI+E ALRRY LTF +V+ AISG+SVNLSAG VET+ G+LQ++ARNLA+++E+FE IIIRQ+ +GG V + D+A+VID F D  FSA+++GQ A +FQVL+PDT+N+T+AG+  R + E+  + LP  ++ S+W DGS +FD+RM+LI  NAL GM +V+IIL+LFLRP VA WVT GI  +FAGALA+ P +GV+LNMIS FA LLVIGIVVDDAIVVGES+HFHVE+GI+GE+GA++G NMV+KPV+FAVITTIM F+P M+LSGP+  +  QI+LVVIA L+FSLIEAFFILPAHL
Sbjct:  148 RLILQRLTNDIRNEMAKIPGGELVRDISKLDEEVTIEITEDALRRYGLTFRQVASAISGNSVNLSAGKVETSIGSLQMKARNLANTKEQFENIIIRQTQDGGKVYLKDIAHVIDRFQDLDFSATYKGQTATMFQVLTPDTINVTKAGKGFRDYIEKKNKELPPGIELSMWMDGSEIFDARMNLIGSNALMGMAMVMIILVLFLRPAVAFWVTAGILVSFAGALAVMPYLGVSLNMISTFAILLVIGIVVDDAIVVGESIHFHVEHGITGEKGAISGTNMVIKPVFFAVITTIMTFMPWMMLSGPMVAVTRQITLVVIAALIFSLIEAFFILPAHL 482          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97776.23877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00167524082.340e-19484.96efflux RND transporter permease subunit n=1 Tax=Li... [more]
UPI00040FE1605.610e-17076.60efflux RND transporter permease subunit n=1 Tax=He... [more]
UPI00035E892F1.690e-16071.87efflux RND transporter permease subunit n=1 Tax=Ro... [more]
A0A520XRU6_9ACTN4.370e-15870.75Efflux RND transporter permease subunit n=2 Tax=Ba... [more]
A0A8J3CPS5_9PROT2.880e-15171.03Acriflavin resistance protein n=1 Tax=Algimonas ar... [more]
A0A420WDF2_9PROT5.430e-14871.03Multidrug efflux pump subunit AcrB n=1 Tax=Litorim... [more]
A0A848V7U8_9PROT1.500e-14066.02Efflux RND transporter permease subunit n=1 Tax=He... [more]
A0A2G2GJ01_9PROT1.630e-13265.97RND transporter n=1 Tax=Robiginitomaculum sp. TaxI... [more]
A0A7C3CBC2_9PROT5.090e-12759.61Efflux RND transporter permease subunit n=1 Tax=He... [more]
A0A2G2J2V8_9PROT4.580e-12562.99RND transporter n=1 Tax=Robiginitomaculum sp. TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig97776contigP-canaliculata_contig97776:1..1077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score520.4
Seed ortholog evalue6.7e-145
Seed eggNOG ortholog1121948.AUAC01000002_gene1954
EggNOG free text desc.Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
EggNOG OGs1MU48@1224,2TQT0@28211,43WRG@69657,COG0841@1,COG0841@2
COG Functional cat.V
Best tax levelHyphomonadaceae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1077
Cds size1077
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817340.6155632-CDS-P-canaliculata_contig97776:0..10771622817340.6155632-CDS-P-canaliculata_contig97776:0..1077Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97776 1..1077 +
1693495233.8940673-CDS-P-canaliculata_contig97776:0..10771693495233.8940673-CDS-P-canaliculata_contig97776:0..1077Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97776 1..1077 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig97776.23877.1prot_P-canaliculata_contig97776.23877.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig97776 1..1077 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig97776.23877.1

>prot_P-canaliculata_contig97776.23877.1 ID=prot_P-canaliculata_contig97776.23877.1|Name=mRNA_P-canaliculata_contig97776.23877.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=359bp
RLELQRAGNDLRLKLTQLPGLQLTNQISKVPEQVTIEISETALRRYNLTF
NEVSQAISGSSVNLSAGTVETTGGNLQLRARNLADSQEEFEKIIIRQSAN
GGVVTVGDVANVIDGFDDDKFSASFRGQPAAVFQVLSPDTMNITEAGEAI
RKFEEEIQESLPSNLQFSIWFDGSTVFDSRMDLISGNALSGMVLVLIILM
LFLRPKVAIWVTVGIAAAFAGALAIAPMIGVTLNMISLFAFLLVIGIVVD
DAIVVGESVHFHVENGISGERGAVAGANMVVKPVYFAVITTIMMFVPMML
LSGPIRTMFEQISLVVIAVLVFSLIEAFFILPAHLRHLKPVDPQEVKGLL
KFQHNLAES
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mRNA from alignment at P-canaliculata_contig97776:1..1077+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig97776.23877.1 ID=mRNA_P-canaliculata_contig97776.23877.1|Name=mRNA_P-canaliculata_contig97776.23877.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1077bp|location=Sequence derived from alignment at P-canaliculata_contig97776:1..1077+ (Pelvetia canaliculata dioecious)
CGACTTGAATTGCAGCGCGCCGGCAATGACCTGCGTTTAAAGCTGACGCA ATTGCCCGGTCTGCAGCTCACCAACCAAATTTCCAAAGTGCCCGAGCAAG TCACGATTGAAATTTCTGAAACGGCTTTGCGCCGCTATAATTTGACGTTT AACGAGGTCAGTCAGGCGATCTCCGGAAGCTCCGTCAATCTCTCGGCCGG GACAGTAGAAACAACCGGCGGTAATTTACAATTGCGCGCGCGAAATTTGG CCGACTCGCAAGAAGAGTTTGAAAAAATTATTATCCGTCAAAGCGCAAAT GGCGGAGTGGTGACCGTCGGCGACGTGGCCAATGTTATTGACGGGTTTGA CGATGACAAATTTTCAGCCTCTTTCCGCGGCCAACCTGCTGCGGTATTTC AAGTGCTCTCTCCCGACACGATGAATATCACCGAGGCCGGTGAAGCCATT CGAAAGTTTGAAGAGGAAATACAGGAGAGCCTCCCGTCGAATTTGCAATT TAGTATTTGGTTTGACGGGTCGACGGTTTTCGATAGCCGTATGGACTTGA TCTCAGGCAATGCGCTCTCAGGGATGGTGCTAGTCCTCATAATCTTGATG TTGTTCCTGCGCCCCAAGGTCGCCATTTGGGTGACGGTCGGCATTGCCGC CGCCTTTGCAGGCGCGCTTGCAATTGCGCCGATGATCGGCGTGACATTGA ACATGATCTCCCTTTTCGCATTCTTGCTCGTGATCGGGATTGTGGTCGAC GATGCCATTGTCGTCGGCGAAAGTGTCCACTTCCATGTCGAGAACGGGAT ATCCGGTGAGCGCGGCGCTGTTGCCGGGGCTAATATGGTCGTCAAACCTG TCTATTTCGCCGTCATCACAACCATCATGATGTTCGTCCCGATGATGCTT CTCTCAGGTCCCATCCGGACCATGTTCGAGCAGATTAGCTTGGTCGTGAT AGCCGTTTTGGTTTTCTCCCTGATTGAGGCCTTCTTTATTCTCCCGGCGC ATTTGCGCCATTTGAAACCCGTCGATCCACAAGAGGTGAAAGGCTTGCTG AAGTTTCAGCACAATTTGGCAGAGAGC
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Coding sequence (CDS) from alignment at P-canaliculata_contig97776:1..1077+

>mRNA_P-canaliculata_contig97776.23877.1 ID=mRNA_P-canaliculata_contig97776.23877.1|Name=mRNA_P-canaliculata_contig97776.23877.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2154bp|location=Sequence derived from alignment at P-canaliculata_contig97776:1..1077+ (Pelvetia canaliculata dioecious)
CGACTTGAATTGCAGCGCGCCGGCAATGACCTGCGTTTAAAGCTGACGCA
ATTGCCCGGTCTGCAGCTCACCAACCAAATTTCCAAAGTGCCCGAGCAAG
TCACGATTGAAATTTCTGAAACGGCTTTGCGCCGCTATAATTTGACGTTT
AACGAGGTCAGTCAGGCGATCTCCGGAAGCTCCGTCAATCTCTCGGCCGG
GACAGTAGAAACAACCGGCGGTAATTTACAATTGCGCGCGCGAAATTTGG
CCGACTCGCAAGAAGAGTTTGAAAAAATTATTATCCGTCAAAGCGCAAAT
GGCGGAGTGGTGACCGTCGGCGACGTGGCCAATGTTATTGACGGGTTTGA
CGATGACAAATTTTCAGCCTCTTTCCGCGGCCAACCTGCTGCGGTATTTC
AAGTGCTCTCTCCCGACACGATGAATATCACCGAGGCCGGTGAAGCCATT
CGAAAGTTTGAAGAGGAAATACAGGAGAGCCTCCCGTCGAATTTGCAATT
TAGTATTTGGTTTGACGGGTCGACGGTTTTCGATAGCCGTATGGACTTGA
TCTCAGGCAATGCGCTCTCAGGGATGGTGCTAGTCCTCATAATCTTGATG
TTGTTCCTGCGCCCCAAGGTCGCCATTTGGGTGACGGTCGGCATTGCCGC
CGCCTTTGCAGGCGCGCTTGCAATTGCGCCGATGATCGGCGTGACATTGA
ACATGATCTCCCTTTTCGCATTCTTGCTCGTGATCGGGATTGTGGTCGAC
GATGCCATTGTCGTCGGCGAAAGTGTCCACTTCCATGTCGAGAACGGGAT
ATCCGGTGAGCGCGGCGCTGTTGCCGGGGCTAATATGGTCGTCAAACCTG
TCTATTTCGCCGTCATCACAACCATCATGATGTTCGTCCCGATGATGCTT
CTCTCAGGTCCCATCCGGACCATGTTCGAGCAGATTAGCTTGGTCGTGAT
AGCCGTTTTGGTTTTCTCCCTGATTGAGGCCTTCTTTATTCTCCCGGCGC
ATTTGCGCCATTTGAAACCCGTCGATCCACAAGAGGTGAAAGGCTTGCTG
AAGTTTCAGCACAATTTGGCAGAGAGCCGACTTGAATTGCAGCGCGCCGG
CAATGACCTGCGTTTAAAGCTGACGCAATTGCCCGGTCTGCAGCTCACCA
ACCAAATTTCCAAAGTGCCCGAGCAAGTCACGATTGAAATTTCTGAAACG
GCTTTGCGCCGCTATAATTTGACGTTTAACGAGGTCAGTCAGGCGATCTC
CGGAAGCTCCGTCAATCTCTCGGCCGGGACAGTAGAAACAACCGGCGGTA
ATTTACAATTGCGCGCGCGAAATTTGGCCGACTCGCAAGAAGAGTTTGAA
AAAATTATTATCCGTCAAAGCGCAAATGGCGGAGTGGTGACCGTCGGCGA
CGTGGCCAATGTTATTGACGGGTTTGACGATGACAAATTTTCAGCCTCTT
TCCGCGGCCAACCTGCTGCGGTATTTCAAGTGCTCTCTCCCGACACGATG
AATATCACCGAGGCCGGTGAAGCCATTCGAAAGTTTGAAGAGGAAATACA
GGAGAGCCTCCCGTCGAATTTGCAATTTAGTATTTGGTTTGACGGGTCGA
CGGTTTTCGATAGCCGTATGGACTTGATCTCAGGCAATGCGCTCTCAGGG
ATGGTGCTAGTCCTCATAATCTTGATGTTGTTCCTGCGCCCCAAGGTCGC
CATTTGGGTGACGGTCGGCATTGCCGCCGCCTTTGCAGGCGCGCTTGCAA
TTGCGCCGATGATCGGCGTGACATTGAACATGATCTCCCTTTTCGCATTC
TTGCTCGTGATCGGGATTGTGGTCGACGATGCCATTGTCGTCGGCGAAAG
TGTCCACTTCCATGTCGAGAACGGGATATCCGGTGAGCGCGGCGCTGTTG
CCGGGGCTAATATGGTCGTCAAACCTGTCTATTTCGCCGTCATCACAACC
ATCATGATGTTCGTCCCGATGATGCTTCTCTCAGGTCCCATCCGGACCAT
GTTCGAGCAGATTAGCTTGGTCGTGATAGCCGTTTTGGTTTTCTCCCTGA
TTGAGGCCTTCTTTATTCTCCCGGCGCATTTGCGCCATTTGAAACCCGTC
GATCCACAAGAGGTGAAAGGCTTGCTGAAGTTTCAGCACAATTTGGCAGA
GAGC
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