mRNA_P-canaliculata_contig9766.23866.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9766.23866.1
Unique NamemRNA_P-canaliculata_contig9766.23866.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9766.23866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9766contigP-canaliculata_contig9766:6739..10915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size492
Cds size483
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9766.23866.1prot_P-canaliculata_contig9766.23866.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9766 6748..10915 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817339.7603376-UTR-P-canaliculata_contig9766:6738..67471622817339.7603376-UTR-P-canaliculata_contig9766:6738..6747Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9766 6739..6747 +
1693495233.306303-UTR-P-canaliculata_contig9766:6738..67471693495233.306303-UTR-P-canaliculata_contig9766:6738..6747Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9766 6739..6747 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817339.7713108-CDS-P-canaliculata_contig9766:6747..68291622817339.7713108-CDS-P-canaliculata_contig9766:6747..6829Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9766 6748..6829 +
1693495233.3155975-CDS-P-canaliculata_contig9766:6747..68291693495233.3155975-CDS-P-canaliculata_contig9766:6747..6829Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9766 6748..6829 +
1622817339.7821765-CDS-P-canaliculata_contig9766:10514..109151622817339.7821765-CDS-P-canaliculata_contig9766:10514..10915Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9766 10515..10915 +
1693495233.3295126-CDS-P-canaliculata_contig9766:10514..109151693495233.3295126-CDS-P-canaliculata_contig9766:10514..10915Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9766 10515..10915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9766.23866.1

>prot_P-canaliculata_contig9766.23866.1 ID=prot_P-canaliculata_contig9766.23866.1|Name=mRNA_P-canaliculata_contig9766.23866.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=161bp
MQAAAAEADRDRVEREMQKLAQAHEGRAEKEVRWKRDADSTTSAASMTAP
EQGQSHAHDHPSGVQVKTAVEVQEVGKAQAVDQAQTADQSKATDKTQVTA
QGHNAIQVRAEDQAQTIKYAQAIDHALAIEKAQAAAQIQAAAQAQATAQA
QAAKAQAAAQA
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mRNA from alignment at P-canaliculata_contig9766:6739..10915+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9766.23866.1 ID=mRNA_P-canaliculata_contig9766.23866.1|Name=mRNA_P-canaliculata_contig9766.23866.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=4177bp|location=Sequence derived from alignment at P-canaliculata_contig9766:6739..10915+ (Pelvetia canaliculata dioecious)
GATGCCAAAATGCAAGCAGCCGCTGCCGAGGCGGACAGAGATCGCGTTGA
GCGGGAGATGCAGAAGTTGGCGCAAGCGCACGAGGGTCGCGGTGAGCATC
ATATACCTTCTAAGACATTCATTAAAACACTCTCACCTAGACACGAGATG
AACACAAGCACACACAGACGCGGAGCCGGCGGGCATCATGTTGCCTAGGA
TTAGCGCGTACACCTCAGGACGGGCCATCTCATGTTCCAAAAGGGTACAC
AGGACATGAAATATGCAGATCGTCGGGGCACTTTGGAGCACAGCTCGAAG
GCCGAATCCGGACGGGCTATAATCGAATCTCACTACGCGTTTTATTTTTT
CCGTGCGCCGCACGGGAAACTGTGAGTATTACAGTAGTGCCAGCATAAAA
AAACAGAATTTTTGCGCACAAAGTTGGCGGGAAAGAAGGCCGTTCATACA
GGAAAAATGTCCGGCCCAAAACCGTACTGAGGAGCCTATACTTTATTATG
TTGCACCAGCACACTAAGGATGTGTTTGTTCTAAACAATGTATAAATAGT
GTTCCTAGACGAAAGAGGAACACACCACAAAATTTCGCTTAGCGATCAGC
CCTCTCGGTCACGAGAACGAAGCGTAGTCGTGGATGGTCCTCCAAGCGAC
TTGATTTCACGGTATTTCCAACGTCCTTCGCTTACGATCTAGATACCGAA
CCGAGCAGCAACGATACCAGAGCCGGACTTGGCGGAAAATGGACCAGAGG
AGTGTCTGCACAAAGTCTATTTCCTATATTGCGCCGCGTATTTGAGCAGG
AACTGTCACCGCTTGGTAGAACCAACAAGCTCGAACGGGGATACGGTCTT
TGTGTCCCCGCTTGTGGTACTTCAATTTTGAACGTCAACAGCTCGCCATG
AGATACTTCTTTTGTCGCTGTACAGCAAGGAGCTGAAGGGTACGGTGTGG
GGCCTCGATCTACGCCGTATCGGTAGTCGATGGGGACCTCTGAGTCGGCT
TTGCTCTGAAAGAATTATGTGCCCCGAGATACCACCCGTAATCCAAAAGC
CGAAGGTCCTACCGAAGTACCCCAGTTTGAGTCGCCACAGGAAATGACAA
ATGAGCGCCCGGGGACCACTTTTGCCAGTATCTGCTCTCTCCGGCCATGG
TAGGTCACTTAAAAGTGTCTGTGCACTGCTGTGTTTGCTCTGACGAGTGT
GCCGCCCGCGTGAATGAAGGTATTACCACAAGTCGAACAACAATAATCAC
GTGGCGTTTGATATTGAAAATAATACGTTTCATGCTGTCTCAATTTGTAA
AATGCATGTACACAAGTAATTTTTTATATGTATATAGGTATACTTTTAAG
TCATGGTTACAGGTGAAATGAGGTTAAAGTATACTTTAATACATATAAAA
TATACTCGTACATGCGTTTTACAAATCGTGATTGCGTGAAACGTATTATT
TTCAGTATTAAACGCCACGTGGTTTTTGTTCTTCAACTTGTGGTAACACC
TTCATTCATGCGTGCGGCACACTCGTCAGGGCAGACACAGCAGCGCACAG
ACACTTTTAAGCGACCTAGCATGGCCAGAGAGAGCAGATACTGGCAAAAG
TGGTCCCCGGGCGCTCATTTGTCATTTCCTGTGGCGACTCAAACTGGGGT
ACTTCGGTAGGACCTTCGGCTTTTGGATTACGGATGGTATCTCGGGGCAC
ATAATTCTTTCAGAGCAAAGCCGACTCAGAGGTCCTCTTCGACTGCCGAT
ACGGCGTAGATCGACGCCCCACACCGTACCCTTCAGCTCCTTGCTGTACA
GCGACAAAAGAAGTATCTCATGGCGAGCTGTTGACGCTCAAACCTGAAGT
AGCACAAGCGGGGACACAAAGGCCGTATCCCCGTTCGAGCTTGTTGGTTT
TTACCAAGCGGTGACAGTTCCTGCTCAAATACGCGGCGCAATATAGGAAA
TAGACTTTGTGCAGACACTCCTCTGGTCCATTTTCCGCCAAGTCCGGCTC
TGGTATCGTTGCTGCTCGGTCCGTTATCTAGATCGTAAGCGAAGGACGTT
GGAAATGCCGTGAAATCAAGCCGCTTGGAGGACCATCCACGACTATGCTT
CGTTCTCGTGACCGAGAGGGCTGATCGCTAAGCGGATTTTTGTGGTGTGT
TCCTCTTTTGTTTGGGTGTACTGTGATGTCTGTTTTGTATTAATATGGAA
GAGTGTTTTGTATTTTTTTAAACACTAAAGATGGAGCTAGAAGAACATCA
AAAGTCGGGTTTTTTGGACCATTTTTTGGTGGCGTTTTAAGGGCAAAATT
TTCCGGATTTACTCATTTTTTGATGCTGGCACTACTGTAGTAGTACTCTG
CTTTGCGTTTGGTGGTCGACGGCGGAATAACGAGGGTAAATACCAAACCT
TAAAATATATTTTTGACGCATTTTGTGGAATCACCGCTCGAAAATTTCCA
CGCGAGCCTCGCTGATGATGAGAACGTTTTGCTAATCCGTTTTACCACAA
TGACCTAAGTTTCGGCCCGTCATCTCTTGTTTCTACTATCTCAAGAGTAC
TGTACTTGATACGGTAATTCACTATTTAATAGCCACCCCCCGTACGCGGT
TTAAAGTCTGATAACGATTTCGCCGGTAAATACACAACGCCGGAAAAAAG
GTAACGCTACGGATTGTGAAAATCTTTGCGAGCCATATTGTTTGCGACGA
TGTCATGGCAGGCAAGGGCATGGCACACGCCCTTACGTAAAATATGTCGA
CTTATGTAAGGGACCTATGTCCCCTGTAAATATTCTCAGCAATAACCGAG
GGGTAGTTAGTATACCTACGGTATAGCGATGTCAGGGCATGGCCCAGGAA
ACTCTTGGAGGAGATAAAATAAACTGGCCGTGTCTGGTTATGGCTACGCG
CTTTTTTTGGAAGTGGTGAGAGGGGGTTTCCCCACCCGTCGCGTGTTTTG
CTCATTAAAAAAAAAAACCAATTCACGAGGGATCCAACAGTAGGAGCTTG
CATCATCGGCGAAAAAAATCAGGTTAGAGGATACCTGAAATGGTAAGGCG
CGTTCTACAAACCTTCACCTGTGAATCAAGAGAGTAAGTGGGATTGACTT
TTCTGGAGCTCGTTGTAGACCAGCCGATCGCCCATGTGTTGTACGTTTCT
GAGCCATCTGGGGAAGATATTTCCTTCGCCCATCCCCCCTCGTTTTTGTT
TGGAGTAAGTTGCTACACAGACCACACTGCTCGTACAAGTATTTACCTTC
ATTTGCCCCGAAAAGCTTTTGAGATCTTGCCAATCCCACATATTTCACAA
GAGCTACTGTCGGAGCCTGAAAGGCATGGTCTGTTGATGAGAGACTCGCT
AGGACTTTCTGTCCAGTGTTTTACCATGCCCATTTCTTTTTAGGTGTTTG
AATGGCCGACAGTCTTCTTCATACGTAATGCCCAGCGAAGCGAAGCCATT
TGTCTTCGAGTACCGAAGAGGTTTTTGGTTGGCTTTTTTCTTTTGTGTTT
TTTGCGCGTTGCAGGTGCTTGTTAGTGGCATTTTTTTTTTCTGCTCCGCC
TGAGTTCGAGAAACAGGCTAATCTACTCACGTAAAGCCAAAACGACAGAC
GAGATTAGGAGTGGACTGTTGTATCCTTGTTAAAAGATGACTCGTAGTGC
CTTTGGATGTGAGAGAAAGTGTCGCACCTCGAAAAGTGGCACGTGTCGCC
CCACTTGCTCGCTATTTTCCCATGTCTCAGGCTTTTTTTTCTCTCATCTG
TTGTGAACTGCCGCCTTTTGTGCCAGCCGAGAAAGAAGTGAGATGGAAGC
GCGACGCGGATTCGACCACTTCAGCTGCCTCGATGACCGCTCCAGAGCAG
GGCCAATCGCATGCTCACGATCATCCATCGGGCGTTCAGGTTAAGACCGC
TGTTGAAGTTCAAGAGGTCGGTAAGGCTCAAGCTGTCGACCAAGCTCAGA
CCGCCGACCAGTCTAAGGCTACCGACAAGACCCAGGTCACCGCCCAGGGT
CATAATGCAATCCAGGTTCGGGCAGAAGATCAGGCGCAGACCATCAAATA
TGCTCAGGCCATCGACCATGCCCTGGCCATCGAAAAGGCCCAGGCCGCCG
CTCAGATCCAGGCCGCCGCCCAGGCTCAGGCCACCGCTCAGGCCCAGGCC
GCCAAAGCTCAGGCTGCTGCTCAGGCC
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Coding sequence (CDS) from alignment at P-canaliculata_contig9766:6739..10915+

>mRNA_P-canaliculata_contig9766.23866.1 ID=mRNA_P-canaliculata_contig9766.23866.1|Name=mRNA_P-canaliculata_contig9766.23866.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=966bp|location=Sequence derived from alignment at P-canaliculata_contig9766:6739..10915+ (Pelvetia canaliculata dioecious)
ATGCAAGCAGCCGCTGCCGAGGCGGACAGAGATCGCGTTGAGCGGGAGAT
GCAGAAGTTGGCGCAAGCGCACGAGGGTCGCGATGCAAGCAGCCGCTGCC
GAGGCGGACAGAGATCGCGTTGAGCGGGAGATGCAGAAGTTGGCGCAAGC
GCACGAGGGTCGCGCCGAGAAAGAAGTGAGATGGAAGCGCGACGCGGATT
CGACCACTTCAGCTGCCTCGATGACCGCTCCAGAGCAGGGCCAATCGCAT
GCTCACGATCATCCATCGGGCGTTCAGGTTAAGACCGCTGTTGAAGTTCA
AGAGGTCGGTAAGGCTCAAGCTGTCGACCAAGCTCAGACCGCCGACCAGT
CTAAGGCTACCGACAAGACCCAGGTCACCGCCCAGGGTCATAATGCAATC
CAGGTTCGGGCAGAAGATCAGGCGCAGACCATCAAATATGCTCAGGCCAT
CGACCATGCCCTGGCCATCGAAAAGGCCCAGGCCGCCGCTCAGATCCAGG
CCGCCGCCCAGGCTCAGGCCACCGCTCAGGCCCAGGCCGCCAAAGCTCAG
GCTGCTGCTCAGGCCCCGAGAAAGAAGTGAGATGGAAGCGCGACGCGGAT
TCGACCACTTCAGCTGCCTCGATGACCGCTCCAGAGCAGGGCCAATCGCA
TGCTCACGATCATCCATCGGGCGTTCAGGTTAAGACCGCTGTTGAAGTTC
AAGAGGTCGGTAAGGCTCAAGCTGTCGACCAAGCTCAGACCGCCGACCAG
TCTAAGGCTACCGACAAGACCCAGGTCACCGCCCAGGGTCATAATGCAAT
CCAGGTTCGGGCAGAAGATCAGGCGCAGACCATCAAATATGCTCAGGCCA
TCGACCATGCCCTGGCCATCGAAAAGGCCCAGGCCGCCGCTCAGATCCAG
GCCGCCGCCCAGGCTCAGGCCACCGCTCAGGCCCAGGCCGCCAAAGCTCA
GGCTGCTGCTCAGGCC
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