mRNA_P-canaliculata_contig9766.23865.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9766.23865.1
Unique NamemRNA_P-canaliculata_contig9766.23865.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9766.23865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9766contigP-canaliculata_contig9766:4089..5454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size630
Cds size627
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817339.7159877-CDS-P-canaliculata_contig9766:4088..41511622817339.7159877-CDS-P-canaliculata_contig9766:4088..4151Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9766 4089..4151 +
1693495233.2883048-CDS-P-canaliculata_contig9766:4088..41511693495233.2883048-CDS-P-canaliculata_contig9766:4088..4151Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9766 4089..4151 +
1622817339.7285018-CDS-P-canaliculata_contig9766:4888..54521622817339.7285018-CDS-P-canaliculata_contig9766:4888..5452Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9766 4889..5452 +
1693495233.297061-CDS-P-canaliculata_contig9766:4888..54521693495233.297061-CDS-P-canaliculata_contig9766:4888..5452Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9766 4889..5452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9766.23865.1prot_P-canaliculata_contig9766.23865.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9766 4089..5452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9766.23865.1

>prot_P-canaliculata_contig9766.23865.1 ID=prot_P-canaliculata_contig9766.23865.1|Name=mRNA_P-canaliculata_contig9766.23865.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=209bp
RESKRLAQLGDRVDGKRSRPKSPRKSDRDDHDRVASPSRRKRGDAGGDSD
KKGVGDKGNDEESSPLNEGNEEVEGKEKDGTEQGRDMDEEQSSEGGDNGK
ENGDAAGFVAPAASRVSKEEGGVTEPATTRGKAAAAAVAAAAATTAAAAA
GSGDISGAGTKTDATVPVVEARGNGTTVVSQRVEDEETGEGDGDDNLEQE
DEDGDEDMV
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mRNA from alignment at P-canaliculata_contig9766:4089..5454+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9766.23865.1 ID=mRNA_P-canaliculata_contig9766.23865.1|Name=mRNA_P-canaliculata_contig9766.23865.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1366bp|location=Sequence derived from alignment at P-canaliculata_contig9766:4089..5454+ (Pelvetia canaliculata dioecious)
AGGGAGAGCAAGAGACTGGCACAGCTTGGCGATCGCGTGGACGGGAAACG
GTCGAGACCGAAGGTGAGCCAGAAGCCACGTGACACGCTGCCCAAACCTT
CTGTCGTGCTGGTAAAATAAGATTGGGTATGTATGGTCACCACATATAGC
AGAGTATGGATCAACCGGGTAAGGTTGCCAATCCTGCTCGTGGTCACCTG
TAAAGGAAAAATAGTTTTCCCTGTCCCCGTTTGCGCCTGAGAATTTGGTT
TCGCGAGACAGGTTCAGCCGTCCCGCCCCGCGTCCTCCTCCTAATACTCG
ATACTACTCAGGCTGAATGAATAAATCGATTAATAGTCTGTCGTCATCCG
AGCGTAACATTCTGTTCACACACGGTCTTAAAAAAGAGTTGTTCCTGGAG
GTTTAGGTTTGTGCACCAGTCGCTCGAATCAATCGATTCAAGCCTTGCTT
TCGTCATGTCTTCTATCAAGTATAATAACGTCCAGACAGGAGCACGAGGT
TCTAGCTTCTGAATACGTAGACGTTCTTATAACCTAGGTTTCATCATTCT
TTTGACGTTAAGGAGACCCCCGTTCTCTTTTGACGTTTTGGAACCTAGTT
CTAATCGTTCTTTTGACATTAAGGAGACCCCCGTTCTCTTTTGACGTTTT
GGAACCTAGGTCTAATCATTCTTTTTACATTAAGGAGACCCCCTCCCTCA
ACCTCTTTGTCTATTCTCTCTTTTCCTCTTTTTCTTGCTCTCAAAACCTC
GGTGGGAAAATTCCGACATCCGGGGTCTTTGATGCGTTACGCCACCCAAG
TCTCCGCGCAAATCCGACAGGGATGATCACGACCGTGTTGCAAGCCCCAG
CAGGCGGAAGAGAGGGGACGCGGGTGGCGACAGTGACAAAAAAGGAGTCG
GAGACAAGGGCAATGACGAGGAGAGCTCGCCTCTGAATGAGGGGAACGAG
GAGGTAGAAGGAAAGGAGAAGGATGGGACGGAACAGGGGCGAGACATGGA
TGAAGAGCAGTCTTCGGAAGGGGGCGACAATGGCAAAGAAAACGGTGATG
CTGCCGGATTTGTTGCACCCGCCGCATCCAGGGTTTCAAAGGAGGAAGGC
GGTGTGACCGAGCCCGCGACGACTCGCGGGAAGGCCGCTGCCGCCGCCGT
TGCCGCTGCTGCCGCCACAACTGCTGCTGCTGCCGCTGGCTCTGGTGATA
TCTCGGGTGCGGGAACCAAAACAGACGCGACAGTCCCGGTGGTTGAGGCC
AGAGGAAATGGCACCACGGTTGTTTCGCAGAGAGTCGAAGACGAGGAGAC
CGGGGAGGGGGATGGAGATGACAACTTGGAGCAGGAGGATGAAGACGGGG
ATGAGGATATGGTGGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig9766:4089..5454+

>mRNA_P-canaliculata_contig9766.23865.1 ID=mRNA_P-canaliculata_contig9766.23865.1|Name=mRNA_P-canaliculata_contig9766.23865.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1254bp|location=Sequence derived from alignment at P-canaliculata_contig9766:4089..5454+ (Pelvetia canaliculata dioecious)
AGGGAGAGCAAGAGACTGGCACAGCTTGGCGATCGCGTGGACGGGAAACG
GTCGAGACCGAAGAGGGAGAGCAAGAGACTGGCACAGCTTGGCGATCGCG
TGGACGGGAAACGGTCGAGACCGAAGTCTCCGCGCAAATCCGACAGGGAT
GATCACGACCGTGTTGCAAGCCCCAGCAGGCGGAAGAGAGGGGACGCGGG
TGGCGACAGTGACAAAAAAGGAGTCGGAGACAAGGGCAATGACGAGGAGA
GCTCGCCTCTGAATGAGGGGAACGAGGAGGTAGAAGGAAAGGAGAAGGAT
GGGACGGAACAGGGGCGAGACATGGATGAAGAGCAGTCTTCGGAAGGGGG
CGACAATGGCAAAGAAAACGGTGATGCTGCCGGATTTGTTGCACCCGCCG
CATCCAGGGTTTCAAAGGAGGAAGGCGGTGTGACCGAGCCCGCGACGACT
CGCGGGAAGGCCGCTGCCGCCGCCGTTGCCGCTGCTGCCGCCACAACTGC
TGCTGCTGCCGCTGGCTCTGGTGATATCTCGGGTGCGGGAACCAAAACAG
ACGCGACAGTCCCGGTGGTTGAGGCCAGAGGAAATGGCACCACGGTTGTT
TCGCAGAGAGTCGAAGACGAGGAGACCGGGGAGGGGGATGGAGATGACAA
CTTGGAGCAGGAGGATGAAGACGGGGATGAGGATATGGTGTCTCCGCGCA
AATCCGACAGGGATGATCACGACCGTGTTGCAAGCCCCAGCAGGCGGAAG
AGAGGGGACGCGGGTGGCGACAGTGACAAAAAAGGAGTCGGAGACAAGGG
CAATGACGAGGAGAGCTCGCCTCTGAATGAGGGGAACGAGGAGGTAGAAG
GAAAGGAGAAGGATGGGACGGAACAGGGGCGAGACATGGATGAAGAGCAG
TCTTCGGAAGGGGGCGACAATGGCAAAGAAAACGGTGATGCTGCCGGATT
TGTTGCACCCGCCGCATCCAGGGTTTCAAAGGAGGAAGGCGGTGTGACCG
AGCCCGCGACGACTCGCGGGAAGGCCGCTGCCGCCGCCGTTGCCGCTGCT
GCCGCCACAACTGCTGCTGCTGCCGCTGGCTCTGGTGATATCTCGGGTGC
GGGAACCAAAACAGACGCGACAGTCCCGGTGGTTGAGGCCAGAGGAAATG
GCACCACGGTTGTTTCGCAGAGAGTCGAAGACGAGGAGACCGGGGAGGGG
GATGGAGATGACAACTTGGAGCAGGAGGATGAAGACGGGGATGAGGATAT
GGTG
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