mRNA_P-canaliculata_contig97628.23863.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig97628.23863.1
Unique NamemRNA_P-canaliculata_contig97628.23863.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97628.23863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig97628contigP-canaliculata_contig97628:73..868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size389
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817339.6371224-CDS-P-canaliculata_contig97628:74..1161622817339.6371224-CDS-P-canaliculata_contig97628:74..116Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97628 75..116 -
1693495233.2534392-CDS-P-canaliculata_contig97628:74..1161693495233.2534392-CDS-P-canaliculata_contig97628:74..116Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97628 75..116 -
1622817339.6481457-CDS-P-canaliculata_contig97628:523..8681622817339.6481457-CDS-P-canaliculata_contig97628:523..868Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97628 524..868 -
1693495233.2691913-CDS-P-canaliculata_contig97628:523..8681693495233.2691913-CDS-P-canaliculata_contig97628:523..868Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97628 524..868 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig97628.23863.1prot_P-canaliculata_contig97628.23863.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig97628 75..868 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig97628.23863.1

>prot_P-canaliculata_contig97628.23863.1 ID=prot_P-canaliculata_contig97628.23863.1|Name=mRNA_P-canaliculata_contig97628.23863.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=129bp
ESVRTRIVSADGRTAIWPTVDGSIVFDFVGNSKGAASKSIILVAADEKRQ
RKVRTIRHFLKEELESSTKDGAVKDGTVTRGWFGRYPRRRHKADIDTARA
HEGEVAMSLDDHGCVEVTVDGLCVLSKSG
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mRNA from alignment at P-canaliculata_contig97628:73..868-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig97628.23863.1 ID=mRNA_P-canaliculata_contig97628.23863.1|Name=mRNA_P-canaliculata_contig97628.23863.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=796bp|location=Sequence derived from alignment at P-canaliculata_contig97628:73..868- (Pelvetia canaliculata dioecious)
GAAAGCGTGCGGACCAGGATCGTCTCTGCGGATGGCCGAACAGCGATTTG
GCCGACGGTAGACGGTTCTATTGTCTTCGACTTTGTGGGCAATAGCAAAG
GCGCCGCCTCAAAGAGCATCATCCTCGTCGCCGCCGACGAAAAGAGGCAG
CGGAAGGTGCGGACTATCCGGCACTTCCTCAAGGAGGAGCTGGAGAGCAG
CACCAAGGATGGCGCCGTCAAGGATGGTACCGTCACACGTGGATGGTTCG
GCCGCTACCCTCGCCGCCGACACAAGGCGGACATTGACACCGCTCGTGCT
CACGAGGGAGAGGTGGCCATGAGCCTAGACGACCATGGCTGTGTGGTGAG
TTGACTCGGGAAAGAATCACGACTCGTTCAAGGAATGGAGAGGAGGGGTG
GAAGGATGTCCTAAACCAGTTCCGGAGTTTAGGAGGGAACTGAACAAAAG
AACCCCCTCCCAGGGGATATTTGACCAGCCCCCTGGTGAAATGAGCGGAG
TTTTGGGCAAGACTGTTTACCATGTAGGGGATCATGCACTCTCATACCCG
GGAGGGGCTGTTTTGGTGACATTCCCGGGGCGGGATCGTCGATTCCCCCC
CCCCCCATTCGTTGAACGGCTCTCACGTACAGTACAAGTAGCGCTATCAT
TTGTTTTCTGTTACGAACAAAGGGCTGCGCTCTTTTTGTCGTCGATGCTG
CCTCAATAACGTGCTCGTGTACTGTTACACCCCTGATCTTGAAAAAACTC
AGGAGGTTACCGTAGATGGGCTCTGCGTGCTGTCCAAGTCCGGGAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig97628:73..868-

>mRNA_P-canaliculata_contig97628.23863.1 ID=mRNA_P-canaliculata_contig97628.23863.1|Name=mRNA_P-canaliculata_contig97628.23863.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at P-canaliculata_contig97628:73..868- (Pelvetia canaliculata dioecious)
GAAAGCGTGCGGACCAGGATCGTCTCTGCGGATGGCCGAACAGCGATTTG
GCCGACGGTAGACGGTTCTATTGTCTTCGACTTTGTGGGCAATAGCAAAG
GCGCCGCCTCAAAGAGCATCATCCTCGTCGCCGCCGACGAAAAGAGGCAG
CGGAAGGTGCGGACTATCCGGCACTTCCTCAAGGAGGAGCTGGAGAGCAG
CACCAAGGATGGCGCCGTCAAGGATGGTACCGTCACACGTGGATGGTTCG
GCCGCTACCCTCGCCGCCGACACAAGGCGGACATTGACACCGCTCGTGCT
CACGAGGGAGAGGTGGCCATGAGCCTAGACGACCATGGCTGTGTGGAAAG
CGTGCGGACCAGGATCGTCTCTGCGGATGGCCGAACAGCGATTTGGCCGA
CGGTAGACGGTTCTATTGTCTTCGACTTTGTGGGCAATAGCAAAGGCGCC
GCCTCAAAGAGCATCATCCTCGTCGCCGCCGACGAAAAGAGGCAGCGGAA
GGTGCGGACTATCCGGCACTTCCTCAAGGAGGAGCTGGAGAGCAGCACCA
AGGATGGCGCCGTCAAGGATGGTACCGTCACACGTGGATGGTTCGGCCGC
TACCCTCGCCGCCGACACAAGGCGGACATTGACACCGCTCGTGCTCACGA
GGGAGAGGTGGCCATGAGCCTAGACGACCATGGCTGTGTGGAGGTTACCG
TAGATGGGCTCTGCGTGCTGTCCAAGTCCGGGGAGGTTACCGTAGATGGG
CTCTGCGTGCTGTCCAAGTCCGGG
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