mRNA_P-canaliculata_contig97628.23862.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig97628.23862.1
Unique NamemRNA_P-canaliculata_contig97628.23862.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97628.23862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig97628contigP-canaliculata_contig97628:12..868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size857
Cds size429
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817339.5862885-CDS-P-canaliculata_contig97628:11..4401622817339.5862885-CDS-P-canaliculata_contig97628:11..440Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97628 12..440 +
1693495233.231881-CDS-P-canaliculata_contig97628:11..4401693495233.231881-CDS-P-canaliculata_contig97628:11..440Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97628 12..440 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817339.5970554-UTR-P-canaliculata_contig97628:440..8681622817339.5970554-UTR-P-canaliculata_contig97628:440..868Pelvetia canaliculata dioeciousUTRP-canaliculata_contig97628 441..868 +
1693495233.2428524-UTR-P-canaliculata_contig97628:440..8681693495233.2428524-UTR-P-canaliculata_contig97628:440..868Pelvetia canaliculata dioeciousUTRP-canaliculata_contig97628 441..868 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig97628.23862.1prot_P-canaliculata_contig97628.23862.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig97628 12..440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig97628.23862.1

>prot_P-canaliculata_contig97628.23862.1 ID=prot_P-canaliculata_contig97628.23862.1|Name=mRNA_P-canaliculata_contig97628.23862.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=143bp
LIPRAAPPPPREPIEPIPAVLPGLGQHAEPIYGNLLSFFKIRGVTVHEHV
IEAASTTKRAQPFVRNRKQMIALLVLYVRAVQRMGGGGIDDPAPGMSPKQ
PLPGMRVHDPLHGKQSCPKLRSFHQGAGQISPGRGFFCSVPS*
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mRNA from alignment at P-canaliculata_contig97628:12..868+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig97628.23862.1 ID=mRNA_P-canaliculata_contig97628.23862.1|Name=mRNA_P-canaliculata_contig97628.23862.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=857bp|location=Sequence derived from alignment at P-canaliculata_contig97628:12..868+ (Pelvetia canaliculata dioecious)
CTCATACCTCGAGCTGCGCCTCCTCCTCCACGGGAACCTATTGAGCCAAT
CCCAGCGGTACTTCCCGGACTTGGACAGCACGCAGAGCCCATCTACGGTA
ACCTCCTGAGTTTTTTCAAGATCAGGGGTGTAACAGTACACGAGCACGTT
ATTGAGGCAGCATCGACGACAAAAAGAGCGCAGCCCTTTGTTCGTAACAG
AAAACAAATGATAGCGCTACTTGTACTGTACGTGAGAGCCGTTCAACGAA
TGGGGGGGGGGGGAATCGACGATCCCGCCCCGGGAATGTCACCAAAACAG
CCCCTCCCGGGTATGAGAGTGCATGATCCCCTACATGGTAAACAGTCTTG
CCCAAAACTCCGCTCATTTCACCAGGGGGCTGGTCAAATATCCCCTGGGA
GGGGGTTCTTTTGTTCAGTTCCCTCCTAAACTCCGGAACTGGTTTAGGAC
ATCCTTCCACCCCTCCTCTCCATTCCTTGAACGAGTCGTGATTCTTTCCC
GAGTCAACTCACCACACAGCCATGGTCGTCTAGGCTCATGGCCACCTCTC
CCTCGTGAGCACGAGCGGTGTCAATGTCCGCCTTGTGTCGGCGGCGAGGG
TAGCGGCCGAACCATCCACGTGTGACGGTACCATCCTTGACGGCGCCATC
CTTGGTGCTGCTCTCCAGCTCCTCCTTGAGGAAGTGCCGGATAGTCCGCA
CCTTCCGCTGCCTCTTTTCGTCGGCGGCGACGAGGATGATGCTCTTTGAG
GCGGCGCCTTTGCTATTGCCCACAAAGTCGAAGACAATAGAACCGTCTAC
CGTCGGCCAAATCGCTGTTCGGCCATCCGCAGAGACGATCCTGGTCCGCA
CGCTTTC
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Coding sequence (CDS) from alignment at P-canaliculata_contig97628:12..868+

>mRNA_P-canaliculata_contig97628.23862.1 ID=mRNA_P-canaliculata_contig97628.23862.1|Name=mRNA_P-canaliculata_contig97628.23862.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at P-canaliculata_contig97628:12..868+ (Pelvetia canaliculata dioecious)
CTCATACCTCGAGCTGCGCCTCCTCCTCCACGGGAACCTATTGAGCCAAT
CCCAGCGGTACTTCCCGGACTTGGACAGCACGCAGAGCCCATCTACGGTA
ACCTCCTGAGTTTTTTCAAGATCAGGGGTGTAACAGTACACGAGCACGTT
ATTGAGGCAGCATCGACGACAAAAAGAGCGCAGCCCTTTGTTCGTAACAG
AAAACAAATGATAGCGCTACTTGTACTGTACGTGAGAGCCGTTCAACGAA
TGGGGGGGGGGGGAATCGACGATCCCGCCCCGGGAATGTCACCAAAACAG
CCCCTCCCGGGTATGAGAGTGCATGATCCCCTACATGGTAAACAGTCTTG
CCCAAAACTCCGCTCATTTCACCAGGGGGCTGGTCAAATATCCCCTGGGA
GGGGGTTCTTTTGTTCAGTTCCCTCCTAACTCATACCTCGAGCTGCGCCT
CCTCCTCCACGGGAACCTATTGAGCCAATCCCAGCGGTACTTCCCGGACT
TGGACAGCACGCAGAGCCCATCTACGGTAACCTCCTGAGTTTTTTCAAGA
TCAGGGGTGTAACAGTACACGAGCACGTTATTGAGGCAGCATCGACGACA
AAAAGAGCGCAGCCCTTTGTTCGTAACAGAAAACAAATGATAGCGCTACT
TGTACTGTACGTGAGAGCCGTTCAACGAATGGGGGGGGGGGGAATCGACG
ATCCCGCCCCGGGAATGTCACCAAAACAGCCCCTCCCGGGTATGAGAGTG
CATGATCCCCTACATGGTAAACAGTCTTGCCCAAAACTCCGCTCATTTCA
CCAGGGGGCTGGTCAAATATCCCCTGGGAGGGGGTTCTTTTGTTCAGTTC
CCTCCTAA
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