mRNA_P-canaliculata_contig9759.23854.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9759.23854.1
Unique NamemRNA_P-canaliculata_contig9759.23854.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig9759.23854.1 vs. uniprot
Match: W2RQM1_9EURO (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Cyphellophora europaea CBS 101466 TaxID=1220924 RepID=W2RQM1_9EURO)

HSP 1 Score: 446 bits (1148), Expect = 7.510e-157
Identity = 205/238 (86.13%), Postives = 225/238 (94.54%), Query Frame = 1 
Query:   61 PAPRQKTFHVYRWDPDTPAQKPRMQAYTLDLDKTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTKQESRVYPLPHTYVVKDLVPDLTQFYRQYKSIKPYLQRDEAPPEGREYRQSRADRQKLDGLYECILCACCSTSCPSYWWNADQYLGPAVLMQSYRWMADSRDQHGAERRAALDNSMSLYRCHTILNCSRTCPKGLNPARAIAEIKKSLAFA 774
            P  + KTFH+YRW+PD P  KPRMQ+YTLDL+KTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPT+T +ESR+YPLPHTYVVKDLVPDLTQFY+QYKSIKPYLQRD+  P+G+EYRQS ADR+KLDGLYECILCACCSTSCPSYWWN+DQYLGPA+L+QSYRW+ADSRDQ  AER+ ALDNSMSLYRCHTILNCSRTCPKGLNPA+AIAEIKKS+AFA
Sbjct:   59 PEAKIKTFHIYRWNPDEPTSKPRMQSYTLDLNKTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTETTKESRIYPLPHTYVVKDLVPDLTQFYKQYKSIKPYLQRDDPSPDGKEYRQSPADRKKLDGLYECILCACCSTSCPSYWWNSDQYLGPAMLLQSYRWLADSRDQRTAERKEALDNSMSLYRCHTILNCSRTCPKGLNPAKAIAEIKKSMAFA 296
[Close]
BLAST of mRNA_P-canaliculata_contig9759.23854.1 vs. uniprot
Match: B6QEH7_TALMQ (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=5 Tax=Eurotiales TaxID=5042 RepID=B6QEH7_TALMQ)

HSP 1 Score: 442 bits (1136), Expect = 5.230e-155
Identity = 204/240 (85.00%), Postives = 223/240 (92.92%), Query Frame = 1 
Query:   52 APSPAPRQKTFHVYRWDPDTPAQKPRMQAYTLDLDKTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTKQESRVYPLPHTYVVKDLVPDLTQFYRQYKSIKPYLQRDEAPPEGREYRQSRADRQKLDGLYECILCACCSTSCPSYWWNADQYLGPAVLMQSYRWMADSRDQHGAERRAALDNSMSLYRCHTILNCSRTCPKGLNPARAIAEIKKSLAF 771
            APS  PR KTFHVYRWDPDTP++KPRMQ+YTLDL+KTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDT +ESR+YPLPHTYVVKDLVPDLT FY+QYKSIKPYLQRD  P +G E RQS  DR+KLDGLYECILCACCSTSCPSYWWN+++YLGPA+L+QSYRW+ADSRDQ   ER+AAL+NSMS+YRCHTILNCSRTCPKGLNP +AIAEIKK LAF
Sbjct:   58 APSATPRTKTFHVYRWDPDTPSEKPRMQSYTLDLNKTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTTKESRIYPLPHTYVVKDLVPDLTHFYKQYKSIKPYLQRDSKPEDGLENRQSIEDRRKLDGLYECILCACCSTSCPSYWWNSEEYLGPAILLQSYRWLADSRDQKTEERKAALNNSMSVYRCHTILNCSRTCPKGLNPGKAIAEIKKMLAF 297
[Close]
BLAST of mRNA_P-canaliculata_contig9759.23854.1 vs. uniprot
Match: A0A5N6KNE5_9ROSI (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6KNE5_9ROSI)

HSP 1 Score: 440 bits (1132), Expect = 8.670e-155
Identity = 201/233 (86.27%), Postives = 221/233 (94.85%), Query Frame = 1 
Query:   76 KTFHVYRWDPDTPAQKPRMQAYTLDLDKTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTKQESRVYPLPHTYVVKDLVPDLTQFYRQYKSIKPYLQRDEAPPEGREYRQSRADRQKLDGLYECILCACCSTSCPSYWWNADQYLGPAVLMQSYRWMADSRDQHGAERRAALDNSMSLYRCHTILNCSRTCPKGLNPARAIAEIKKSLAFA 774
            KTFH+YRW+PD P  KPRMQ+YTLDL+KTGPMMLDALIRIKNE+D TLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDT ++SR+YPLPHTYVVKDLVPDLTQFY+QYKSIKPYLQ D  PPEG+EYRQS+A+R KLDGLYECILCACCSTSCPSYWWN+++YLGPAVLMQSYRW+ADSRDQ  AER+A LDNSMSLYRCHTILNCSRTCPKGLNPA+AIAEIKKS++FA
Sbjct:   40 KTFHIYRWNPDEPTSKPRMQSYTLDLNKTGPMMLDALIRIKNEIDQTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTAKDSRIYPLPHTYVVKDLVPDLTQFYKQYKSIKPYLQHDGPPPEGKEYRQSQAERAKLDGLYECILCACCSTSCPSYWWNSEEYLGPAVLMQSYRWLADSRDQKTAERKAMLDNSMSLYRCHTILNCSRTCPKGLNPAKAIAEIKKSMSFA 272
[Close]
BLAST of mRNA_P-canaliculata_contig9759.23854.1 vs. uniprot
Match: A0A6G1KW06_9PEZI (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Teratosphaeria nubilosa TaxID=161662 RepID=A0A6G1KW06_9PEZI)

HSP 1 Score: 441 bits (1134), Expect = 1.130e-154
Identity = 209/265 (78.87%), Postives = 235/265 (88.68%), Query Frame = 1 
Query:   16 TTTDSATRSTPAAPS--------PAPRQ----KTFHVYRWDPDTPAQKPRMQAYTLDLDKTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTKQESRVYPLPHTYVVKDLVPDLTQFYRQYKSIKPYLQRDEAPPEGREYRQSRADRQKLDGLYECILCACCSTSCPSYWWNADQYLGPAVLMQSYRWMADSRDQHGAERRAALDNSMSLYRCHTILNCSRTCPKGLNPARAIAEIKKSLAFA 774
            T ++  +RSTP  P         PA  Q    KTFH+YRWDPD P++KP+MQ+YTLDL+KTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDT +ESR+YPLPHTYVVKDLVPD+TQFY+QYKSIKPYLQRD  P +GREYRQS+ DR+KLDGLYECILCACCSTSCPSYWWN+++YLGPAVL+QSYRW+ADSRD+  A+R+ AL+NSMSLYRCHTILNCSRTCPKGLNPA AIAEIKKS+AFA
Sbjct:   35 TVSEMTSRSTPPTPETKTSTIKDPAREQDSKIKTFHIYRWDPDQPSEKPKMQSYTLDLNKTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTAKESRIYPLPHTYVVKDLVPDMTQFYKQYKSIKPYLQRDAPPEDGREYRQSKEDRRKLDGLYECILCACCSTSCPSYWWNSEEYLGPAVLLQSYRWIADSRDEKTAQRKDALNNSMSLYRCHTILNCSRTCPKGLNPALAIAEIKKSMAFA 299
[Close]
BLAST of mRNA_P-canaliculata_contig9759.23854.1 vs. uniprot
Match: A0A0D2GPU7_9EURO (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=10 Tax=Herpotrichiellaceae TaxID=43219 RepID=A0A0D2GPU7_9EURO)

HSP 1 Score: 440 bits (1131), Expect = 3.020e-154
Identity = 202/233 (86.70%), Postives = 220/233 (94.42%), Query Frame = 1 
Query:   76 KTFHVYRWDPDTPAQKPRMQAYTLDLDKTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTKQESRVYPLPHTYVVKDLVPDLTQFYRQYKSIKPYLQRDEAPPEGREYRQSRADRQKLDGLYECILCACCSTSCPSYWWNADQYLGPAVLMQSYRWMADSRDQHGAERRAALDNSMSLYRCHTILNCSRTCPKGLNPARAIAEIKKSLAFA 774
            KTFH+YRW+PD P  KPRMQ YTLDL+KTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDT +ESR+YPLPHTYVVKDLVPDLTQFY+QYKSIKP+LQRD   P+G+E RQS ADR+KLDGLYECILCACCSTSCPSYWWN+DQYLGPA+L+QSYRW+ADSRD+  AER+ ALDNSMSLYRCHTILNCSRTCPKGLNPA+AIAEIKKSL+FA
Sbjct:   65 KTFHIYRWNPDEPTSKPRMQTYTLDLNKTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTAKESRIYPLPHTYVVKDLVPDLTQFYKQYKSIKPFLQRDTKSPDGKENRQSPADRKKLDGLYECILCACCSTSCPSYWWNSDQYLGPAILLQSYRWLADSRDERKAERKEALDNSMSLYRCHTILNCSRTCPKGLNPAKAIAEIKKSLSFA 297
[Close]
BLAST of mRNA_P-canaliculata_contig9759.23854.1 vs. uniprot
Match: A0A6A5XQZ8_9PLEO (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Aaosphaeria arxii CBS 175.79 TaxID=1450172 RepID=A0A6A5XQZ8_9PLEO)

HSP 1 Score: 438 bits (1127), Expect = 7.710e-154
Identity = 204/258 (79.07%), Postives = 233/258 (90.31%), Query Frame = 1 
Query:    1 RPMATTTTDSATRSTP-AAPSPAPRQKTFHVYRWDPDTPAQKPRMQAYTLDLDKTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTKQESRVYPLPHTYVVKDLVPDLTQFYRQYKSIKPYLQRDEAPPEGREYRQSRADRQKLDGLYECILCACCSTSCPSYWWNADQYLGPAVLMQSYRWMADSRDQHGAERRAALDNSMSLYRCHTILNCSRTCPKGLNPARAIAEIKKSLAF 771
            R +A+  ++S T +TP  APS  P+ KTFH+YRW+PD P+ KPRMQ+YTLDL+KTGPMMLDALIRIKNE DPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDT +ESR+YPLPH YVVKDLVPD+TQFY+QY+S+KPYLQRD   P+GREYRQS+ADR+KLDGLYECILCACCSTSCPSYWWN ++YLGPAVL+QSYRW+ADSRD+   ER  AL+NSMS+YRCHTILNCSRTCPKGLNPA AIAEIKK++AF
Sbjct:   26 RGLASVVSESKTSTTPDPAPSKEPKTKTFHIYRWNPDEPSSKPRMQSYTLDLNKTGPMMLDALIRIKNETDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTTKESRIYPLPHMYVVKDLVPDMTQFYKQYRSVKPYLQRDTPAPDGREYRQSKADRKKLDGLYECILCACCSTSCPSYWWNQEEYLGPAVLLQSYRWIADSRDERKPERLDALNNSMSVYRCHTILNCSRTCPKGLNPALAIAEIKKNMAF 283
[Close]
BLAST of mRNA_P-canaliculata_contig9759.23854.1 vs. uniprot
Match: H6BLL0_EXODN (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=9 Tax=Herpotrichiellaceae TaxID=43219 RepID=H6BLL0_EXODN)

HSP 1 Score: 439 bits (1128), Expect = 8.650e-154
Identity = 201/235 (85.53%), Postives = 221/235 (94.04%), Query Frame = 1 
Query:   70 RQKTFHVYRWDPDTPAQKPRMQAYTLDLDKTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTKQESRVYPLPHTYVVKDLVPDLTQFYRQYKSIKPYLQRDEAPPEGREYRQSRADRQKLDGLYECILCACCSTSCPSYWWNADQYLGPAVLMQSYRWMADSRDQHGAERRAALDNSMSLYRCHTILNCSRTCPKGLNPARAIAEIKKSLAFA 774
            R KTFH+YRW+PD P  KPRMQ YTLDL+KTGPM+LDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDT +ESR+YPLPHTYVVKDLVPDLT FY+QYKSIKP+LQRD   P+G+E+RQS ADR+KLDGLYECILCACCSTSCPSYWWN+DQYLGPA+L+QSYRW+ADSRD+  AER+ ALDNSMSLYRCHTILNCSRTCPKGLNPA+AIAEIKKSL+FA
Sbjct:   63 RIKTFHIYRWNPDEPTSKPRMQTYTLDLNKTGPMVLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTGKESRIYPLPHTYVVKDLVPDLTHFYKQYKSIKPFLQRDTKSPDGKEFRQSPADRKKLDGLYECILCACCSTSCPSYWWNSDQYLGPAILLQSYRWLADSRDERKAERKEALDNSMSLYRCHTILNCSRTCPKGLNPAKAIAEIKKSLSFA 297
[Close]
BLAST of mRNA_P-canaliculata_contig9759.23854.1 vs. uniprot
Match: E9CYH0_COCPS (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=7 Tax=Coccidioides TaxID=5500 RepID=E9CYH0_COCPS)

HSP 1 Score: 437 bits (1123), Expect = 2.810e-153
Identity = 203/258 (78.68%), Postives = 230/258 (89.15%), Query Frame = 1 
Query:    1 RPMATTTTDSATRSTPAAPSPAPRQKTFHVYRWDPDTPAQKPRMQAYTLDLDKTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTKQESRVYPLPHTYVVKDLVPDLTQFYRQYKSIKPYLQRDEAPPEGREYRQSRADRQKLDGLYECILCACCSTSCPSYWWNADQYLGPAVLMQSYRWMADSRDQHGAERRAALDNSMSLYRCHTILNCSRTCPKGLNPARAIAEIKKSLAFA 774
            R  AT  + S   S PA+ SP  + KTFH+YRWDPD P++KPRMQ YT+DL+KTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIP DT +ESR+YPLPHTYVVKDLVPD+T FY+QYKSIKPYLQR+   P+G+E RQS ADR+KLDGLYECILCACCSTSCPSYWWN+++YLGPA+L+QSYRW+ DSRD+  AERRAALDNSMS+YRCHTI+NC+RTCPKGLNP +AIAEIKK LAFA
Sbjct:   25 RTYATVESKSPETSNPAS-SPEAKNKTFHIYRWDPDRPSEKPRMQTYTIDLNKTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPADTAKESRIYPLPHTYVVKDLVPDMTHFYKQYKSIKPYLQRETKSPDGKEIRQSPADRKKLDGLYECILCACCSTSCPSYWWNSEEYLGPAILLQSYRWLVDSRDEKTAERRAALDNSMSVYRCHTIMNCTRTCPKGLNPGKAIAEIKKQLAFA 281
[Close]
BLAST of mRNA_P-canaliculata_contig9759.23854.1 vs. uniprot
Match: A0A150V0F8_9PEZI (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Acidomyces richmondensis BFW TaxID=766039 RepID=A0A150V0F8_9PEZI)

HSP 1 Score: 436 bits (1122), Expect = 2.890e-153
Identity = 208/271 (76.75%), Postives = 233/271 (85.98%), Query Frame = 1 
Query:    7 MATTTTDSATRSTPAAPSPAPRQ---------------KTFHVYRWDPDTPAQKPRMQAYTLDLDKTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTKQESRVYPLPHTYVVKDLVPDLTQFYRQYKSIKPYLQRDEAPPEGREYRQSRADRQKLDGLYECILCACCSTSCPSYWWNADQYLGPAVLMQSYRWMADSRDQHGAERRAALDNSMSLYRCHTILNCSRTCPKGLNPARAIAEIKKSLAFA 774
            MATT    +  S+P+ P  +PRQ               KTFH+YRW+PD P  KPRMQ+YTLDL+KTGPMMLDALIRIKNE+DPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDT +ESR+YPLPHTYVVKDLVPDLTQFY+QYKSIKPYLQRD   P+GRE RQS+A+R+KLDGLYECILCACCSTSCPSYWWN+++YLGPAVLMQSYRW+ADSRD+   +R+  L+NSMSLYRCHTILNCSRTCPKGLNPA AIAEIKKSLAF+
Sbjct:    1 MATTVEPPSPASSPSRPPLSPRQTSTVNEPKMDADAKIKTFHIYRWNPDEPTSKPRMQSYTLDLNKTGPMMLDALIRIKNEIDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTTKESRIYPLPHTYVVKDLVPDLTQFYKQYKSIKPYLQRDTPSPDGRENRQSKAERRKLDGLYECILCACCSTSCPSYWWNSEEYLGPAVLMQSYRWIADSRDERTEQRKEELNNSMSLYRCHTILNCSRTCPKGLNPALAIAEIKKSLAFS 271
[Close]
BLAST of mRNA_P-canaliculata_contig9759.23854.1 vs. uniprot
Match: A0A0D2A4H2_9PEZI (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Verruconis gallopava TaxID=253628 RepID=A0A0D2A4H2_9PEZI)

HSP 1 Score: 436 bits (1121), Expect = 4.920e-153
Identity = 203/251 (80.88%), Postives = 230/251 (91.63%), Query Frame = 1 
Query:   22 TDSATRSTPAAPSPAPRQKTFHVYRWDPDTPAQKPRMQAYTLDLDKTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTKQESRVYPLPHTYVVKDLVPDLTQFYRQYKSIKPYLQRDEAPPEGREYRQSRADRQKLDGLYECILCACCSTSCPSYWWNADQYLGPAVLMQSYRWMADSRDQHGAERRAALDNSMSLYRCHTILNCSRTCPKGLNPARAIAEIKKSLAFA 774
            T+++T   PA PS   + KTF VYRW+PDTP +KPRMQ YTLDL+KTGPMMLDALIRIKNE+DPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDT +ESR+YPLPHTYVVKDLVPD+TQFY+QY+SIKPYLQRD  PP+GRE RQS A+R+KLDGLYECILCACCSTSCPSYWWN+++YLGPA+L+QSYRW+ADSRD+   +R+AALDNSMSLYRCHTILNCSR CPKGLNPA AIAEIKKS++FA
Sbjct:   28 TEASTTQEPA-PSKDAKMKTFKVYRWNPDTPNEKPRMQTYTLDLNKTGPMMLDALIRIKNELDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTTKESRIYPLPHTYVVKDLVPDMTQFYKQYRSIKPYLQRDTPPPDGRENRQSIAERKKLDGLYECILCACCSTSCPSYWWNSEEYLGPAILLQSYRWLADSRDERKEQRKAALDNSMSLYRCHTILNCSRVCPKGLNPALAIAEIKKSMSFA 277
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9759.23854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W2RQM1_9EURO7.510e-15786.13Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
B6QEH7_TALMQ5.230e-15585.00Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A5N6KNE5_9ROSI8.670e-15586.27Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A6G1KW06_9PEZI1.130e-15478.87Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A0D2GPU7_9EURO3.020e-15486.70Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A6A5XQZ8_9PLEO7.710e-15479.07Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
H6BLL0_EXODN8.650e-15485.53Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
E9CYH0_COCPS2.810e-15378.68Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A150V0F8_9PEZI2.890e-15376.75Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A0D2A4H2_9PEZI4.920e-15380.88Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9759contigP-canaliculata_contig9759:4997..5869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score447.6
Seed ortholog evalue4e-123
Seed eggNOG ortholog293227.XP_008719405.1
Preferred nameSDH2
KEGG rclassRC00045
KEGG koko:K00235
KEGG ReactionR02164
KEGG Pathwayko00020,ko00190,ko01100,ko01110,ko01120,ko01130,ko01200,ko04714,ko04932,ko05010,ko05012,ko05016,map00020,map00190,map01100,map01110,map01120,map01130,map01200,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00009,M00011,M00148
GOsGO:0000104,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005749,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006105,GO:0006119,GO:0006121,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008177,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016627,GO:0016635,GO:0016999,GO:0017144,GO:0019637,GO:0019693,GO:0019752,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0034641,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045257,GO:0045273,GO:0045281,GO:0045283,GO:0045333,GO:0046034,GO:0046483,GO:0055086,GO:0055114,GO:0070469,GO:0071704,GO:0072350,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
EggNOG free text desc.Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q)
EggNOG OGs20CH2@147545,38CDD@33154,3MWBT@451870,3NVAA@4751,3QNWJ@4890,COG0479@1,KOG3049@2759
EC1.3.5.1
COG Functional cat.C
Best tax levelChaetothyriomycetidae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons3
Model size777
Cds size771
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9759.23854.1prot_P-canaliculata_contig9759.23854.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9759 5003..5869 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817338.9417422-UTR-P-canaliculata_contig9759:4996..50021622817338.9417422-UTR-P-canaliculata_contig9759:4996..5002Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9759 4997..5002 +
1693495232.75774-UTR-P-canaliculata_contig9759:4996..50021693495232.75774-UTR-P-canaliculata_contig9759:4996..5002Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9759 4997..5002 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817338.9547837-CDS-P-canaliculata_contig9759:5002..52971622817338.9547837-CDS-P-canaliculata_contig9759:5002..5297Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9759 5003..5297 +
1693495232.7705822-CDS-P-canaliculata_contig9759:5002..52971693495232.7705822-CDS-P-canaliculata_contig9759:5002..5297Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9759 5003..5297 +
1622817338.9677014-CDS-P-canaliculata_contig9759:5347..54991622817338.9677014-CDS-P-canaliculata_contig9759:5347..5499Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9759 5348..5499 +
1693495232.7826903-CDS-P-canaliculata_contig9759:5347..54991693495232.7826903-CDS-P-canaliculata_contig9759:5347..5499Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9759 5348..5499 +
1622817338.9806194-CDS-P-canaliculata_contig9759:5545..58691622817338.9806194-CDS-P-canaliculata_contig9759:5545..5869Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9759 5546..5869 +
1693495232.796856-CDS-P-canaliculata_contig9759:5545..58691693495232.796856-CDS-P-canaliculata_contig9759:5545..5869Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9759 5546..5869 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9759.23854.1

>prot_P-canaliculata_contig9759.23854.1 ID=prot_P-canaliculata_contig9759.23854.1|Name=mRNA_P-canaliculata_contig9759.23854.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=257bp
MATTTTDSATRSTPAAPSPAPRQKTFHVYRWDPDTPAQKPRMQAYTLDLD
KTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCR
IPTDTKQESRVYPLPHTYVVKDLVPDLTQFYRQYKSIKPYLQRDEAPPEG
REYRQSRADRQKLDGLYECILCACCSTSCPSYWWNADQYLGPAVLMQSYR
WMADSRDQHGAERRAALDNSMSLYRCHTILNCSRTCPKGLNPARAIAEIK
KSLAFA*
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mRNA from alignment at P-canaliculata_contig9759:4997..5869+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9759.23854.1 ID=mRNA_P-canaliculata_contig9759.23854.1|Name=mRNA_P-canaliculata_contig9759.23854.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=873bp|location=Sequence derived from alignment at P-canaliculata_contig9759:4997..5869+ (Pelvetia canaliculata dioecious)
CGCCCCATGGCCACCACCACCACGGACTCGGCCACCCGCAGCACCCCCGC
AGCCCCCTCCCCGGCCCCCCGGCAAAAAACCTTCCACGTCTACCGCTGGG
ACCCCGACACGCCGGCGCAGAAGCCGCGCATGCAGGCATACACGCTCGAC
CTCGACAAGACGGGCCCGATGATGCTGGACGCGCTGATCCGCATCAAGAA
CGAGGTGGACCCCACACTGACGTTCCGGCGGAGCTGTCGCGAGGGCATCT
GCGGGAGCTGCGCGATGAACATCGACGGCGTGAACACGCTGGCGTGCTTG
TGTGCGTCTCCCCGCGCAGCGCCAGGCAGGCATGTCGCTGACGCTGCGCA
GGCCGCATCCCCACCGACACCAAGCAGGAGTCGCGCGTGTACCCGCTGCC
GCACACGTACGTGGTCAAGGACCTGGTGCCGGACCTGACGCAGTTCTACC
GGCAGTACAAGTCGATCAAGCCGTACCTGCAGCGCGACGAGGCGCCGCCA
GAGGTACGTCGCCCGCTCCACGCCTCGCACCCCCTCTCACACCCCGCAGG
GCCGCGAGTACCGGCAGTCGCGCGCCGACCGGCAGAAGCTGGACGGGCTG
TACGAGTGCATCCTGTGCGCGTGCTGCAGCACGTCGTGCCCGTCGTACTG
GTGGAACGCCGACCAGTACCTGGGCCCCGCGGTGCTGATGCAGTCGTACC
GCTGGATGGCCGACTCGCGCGACCAGCACGGCGCCGAGCGCCGCGCCGCC
CTCGACAACAGCATGAGCTTGTACCGCTGCCACACGATCCTCAACTGCTC
GCGCACCTGCCCCAAGGGCCTCAACCCGGCGCGCGCTATTGCGGAGATCA
AGAAGAGTCTGGCGTTTGCGTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig9759:4997..5869+

>mRNA_P-canaliculata_contig9759.23854.1 ID=mRNA_P-canaliculata_contig9759.23854.1|Name=mRNA_P-canaliculata_contig9759.23854.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1542bp|location=Sequence derived from alignment at P-canaliculata_contig9759:4997..5869+ (Pelvetia canaliculata dioecious)
ATGGCCACCACCACCACGGACTCGGCCACCCGCAGCACCCCCGCAGCCCC
CTCCCCGGCCCCCCGGCAAAAAACCTTCCACGTCTACCGCTGGGACCCCG
ACACGCCGGCGCAGAAGCCGCGCATGCAGGCATACACGCTCGACCTCGAC
AAGACGGGCCCGATGATGCTGGACGCGCTGATCCGCATCAAGAACGAGGT
GGACCCCACACTGACGTTCCGGCGGAGCTGTCGCGAGGGCATCTGCGGGA
GCTGCGCGATGAACATCGACGGCGTGAACACGCTGGCGTGCTTGTATGGC
CACCACCACCACGGACTCGGCCACCCGCAGCACCCCCGCAGCCCCCTCCC
CGGCCCCCCGGCAAAAAACCTTCCACGTCTACCGCTGGGACCCCGACACG
CCGGCGCAGAAGCCGCGCATGCAGGCATACACGCTCGACCTCGACAAGAC
GGGCCCGATGATGCTGGACGCGCTGATCCGCATCAAGAACGAGGTGGACC
CCACACTGACGTTCCGGCGGAGCTGTCGCGAGGGCATCTGCGGGAGCTGC
GCGATGAACATCGACGGCGTGAACACGCTGGCGTGCTTGTGCCGCATCCC
CACCGACACCAAGCAGGAGTCGCGCGTGTACCCGCTGCCGCACACGTACG
TGGTCAAGGACCTGGTGCCGGACCTGACGCAGTTCTACCGGCAGTACAAG
TCGATCAAGCCGTACCTGCAGCGCGACGAGGCGCCGCCAGAGGCCGCATC
CCCACCGACACCAAGCAGGAGTCGCGCGTGTACCCGCTGCCGCACACGTA
CGTGGTCAAGGACCTGGTGCCGGACCTGACGCAGTTCTACCGGCAGTACA
AGTCGATCAAGCCGTACCTGCAGCGCGACGAGGCGCCGCCAGAGGGCCGC
GAGTACCGGCAGTCGCGCGCCGACCGGCAGAAGCTGGACGGGCTGTACGA
GTGCATCCTGTGCGCGTGCTGCAGCACGTCGTGCCCGTCGTACTGGTGGA
ACGCCGACCAGTACCTGGGCCCCGCGGTGCTGATGCAGTCGTACCGCTGG
ATGGCCGACTCGCGCGACCAGCACGGCGCCGAGCGCCGCGCCGCCCTCGA
CAACAGCATGAGCTTGTACCGCTGCCACACGATCCTCAACTGCTCGCGCA
CCTGCCCCAAGGGCCTCAACCCGGCGCGCGCTATTGCGGAGATCAAGAAG
AGTCTGGCGTTTGCGTGAGGCCGCGAGTACCGGCAGTCGCGCGCCGACCG
GCAGAAGCTGGACGGGCTGTACGAGTGCATCCTGTGCGCGTGCTGCAGCA
CGTCGTGCCCGTCGTACTGGTGGAACGCCGACCAGTACCTGGGCCCCGCG
GTGCTGATGCAGTCGTACCGCTGGATGGCCGACTCGCGCGACCAGCACGG
CGCCGAGCGCCGCGCCGCCCTCGACAACAGCATGAGCTTGTACCGCTGCC
ACACGATCCTCAACTGCTCGCGCACCTGCCCCAAGGGCCTCAACCCGGCG
CGCGCTATTGCGGAGATCAAGAAGAGTCTGGCGTTTGCGTGA
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