mRNA_P-canaliculata_contig9759.23854.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-canaliculata_contig9759.23854.1
Unique Name	mRNA_P-canaliculata_contig9759.23854.1
Type	mRNA
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))

Homology

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BLAST of mRNA_P-canaliculata_contig9759.23854.1 vs. uniprot
Match: W2RQM1_9EURO (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Cyphellophora europaea CBS 101466 TaxID=1220924 RepID=W2RQM1_9EURO)

HSP 1 Score: 446 bits (1148), Expect = 7.510e-157
Identity = 205/238 (86.13%), Postives = 225/238 (94.54%), Query Frame = 1

Query:   61 PAPRQKTFHVYRWDPDTPAQKPRMQAYTLDLDKTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTKQESRVYPLPHTYVVKDLVPDLTQFYRQYKSIKPYLQRDEAPPEGREYRQSRADRQKLDGLYECILCACCSTSCPSYWWNADQYLGPAVLMQSYRWMADSRDQHGAERRAALDNSMSLYRCHTILNCSRTCPKGLNPARAIAEIKKSLAFA 774
            P  + KTFH+YRW+PD P  KPRMQ+YTLDL+KTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPT+T +ESR+YPLPHTYVVKDLVPDLTQFY+QYKSIKPYLQRD+  P+G+EYRQS ADR+KLDGLYECILCACCSTSCPSYWWN+DQYLGPA+L+QSYRW+ADSRDQ  AER+ ALDNSMSLYRCHTILNCSRTCPKGLNPA+AIAEIKKS+AFA
Sbjct:   59 PEAKIKTFHIYRWNPDEPTSKPRMQSYTLDLNKTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTETTKESRIYPLPHTYVVKDLVPDLTQFYKQYKSIKPYLQRDDPSPDGKEYRQSPADRKKLDGLYECILCACCSTSCPSYWWNSDQYLGPAMLLQSYRWLADSRDQRTAERKEALDNSMSLYRCHTILNCSRTCPKGLNPAKAIAEIKKSMAFA 296

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BLAST of mRNA_P-canaliculata_contig9759.23854.1 vs. uniprot
Match: B6QEH7_TALMQ (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=5 Tax=Eurotiales TaxID=5042 RepID=B6QEH7_TALMQ)

HSP 1 Score: 442 bits (1136), Expect = 5.230e-155
Identity = 204/240 (85.00%), Postives = 223/240 (92.92%), Query Frame = 1

Query:   52 APSPAPRQKTFHVYRWDPDTPAQKPRMQAYTLDLDKTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTKQESRVYPLPHTYVVKDLVPDLTQFYRQYKSIKPYLQRDEAPPEGREYRQSRADRQKLDGLYECILCACCSTSCPSYWWNADQYLGPAVLMQSYRWMADSRDQHGAERRAALDNSMSLYRCHTILNCSRTCPKGLNPARAIAEIKKSLAF 771
            APS  PR KTFHVYRWDPDTP++KPRMQ+YTLDL+KTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDT +ESR+YPLPHTYVVKDLVPDLT FY+QYKSIKPYLQRD  P +G E RQS  DR+KLDGLYECILCACCSTSCPSYWWN+++YLGPA+L+QSYRW+ADSRDQ   ER+AAL+NSMS+YRCHTILNCSRTCPKGLNP +AIAEIKK LAF
Sbjct:   58 APSATPRTKTFHVYRWDPDTPSEKPRMQSYTLDLNKTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTTKESRIYPLPHTYVVKDLVPDLTHFYKQYKSIKPYLQRDSKPEDGLENRQSIEDRRKLDGLYECILCACCSTSCPSYWWNSEEYLGPAILLQSYRWLADSRDQKTEERKAALNNSMSVYRCHTILNCSRTCPKGLNPGKAIAEIKKMLAF 297

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BLAST of mRNA_P-canaliculata_contig9759.23854.1 vs. uniprot
Match: A0A5N6KNE5_9ROSI (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6KNE5_9ROSI)

HSP 1 Score: 440 bits (1132), Expect = 8.670e-155
Identity = 201/233 (86.27%), Postives = 221/233 (94.85%), Query Frame = 1

Query:   76 KTFHVYRWDPDTPAQKPRMQAYTLDLDKTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTKQESRVYPLPHTYVVKDLVPDLTQFYRQYKSIKPYLQRDEAPPEGREYRQSRADRQKLDGLYECILCACCSTSCPSYWWNADQYLGPAVLMQSYRWMADSRDQHGAERRAALDNSMSLYRCHTILNCSRTCPKGLNPARAIAEIKKSLAFA 774
            KTFH+YRW+PD P  KPRMQ+YTLDL+KTGPMMLDALIRIKNE+D TLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDT ++SR+YPLPHTYVVKDLVPDLTQFY+QYKSIKPYLQ D  PPEG+EYRQS+A+R KLDGLYECILCACCSTSCPSYWWN+++YLGPAVLMQSYRW+ADSRDQ  AER+A LDNSMSLYRCHTILNCSRTCPKGLNPA+AIAEIKKS++FA
Sbjct:   40 KTFHIYRWNPDEPTSKPRMQSYTLDLNKTGPMMLDALIRIKNEIDQTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTAKDSRIYPLPHTYVVKDLVPDLTQFYKQYKSIKPYLQHDGPPPEGKEYRQSQAERAKLDGLYECILCACCSTSCPSYWWNSEEYLGPAVLMQSYRWLADSRDQKTAERKAMLDNSMSLYRCHTILNCSRTCPKGLNPAKAIAEIKKSMSFA 272

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BLAST of mRNA_P-canaliculata_contig9759.23854.1 vs. uniprot
Match: A0A6G1KW06_9PEZI (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Teratosphaeria nubilosa TaxID=161662 RepID=A0A6G1KW06_9PEZI)

HSP 1 Score: 441 bits (1134), Expect = 1.130e-154
Identity = 209/265 (78.87%), Postives = 235/265 (88.68%), Query Frame = 1

Query:   16 TTTDSATRSTPAAPS--------PAPRQ----KTFHVYRWDPDTPAQKPRMQAYTLDLDKTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTKQESRVYPLPHTYVVKDLVPDLTQFYRQYKSIKPYLQRDEAPPEGREYRQSRADRQKLDGLYECILCACCSTSCPSYWWNADQYLGPAVLMQSYRWMADSRDQHGAERRAALDNSMSLYRCHTILNCSRTCPKGLNPARAIAEIKKSLAFA 774
            T ++  +RSTP  P         PA  Q    KTFH+YRWDPD P++KP+MQ+YTLDL+KTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDT +ESR+YPLPHTYVVKDLVPD+TQFY+QYKSIKPYLQRD  P +GREYRQS+ DR+KLDGLYECILCACCSTSCPSYWWN+++YLGPAVL+QSYRW+ADSRD+  A+R+ AL+NSMSLYRCHTILNCSRTCPKGLNPA AIAEIKKS+AFA
Sbjct:   35 TVSEMTSRSTPPTPETKTSTIKDPAREQDSKIKTFHIYRWDPDQPSEKPKMQSYTLDLNKTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTAKESRIYPLPHTYVVKDLVPDMTQFYKQYKSIKPYLQRDAPPEDGREYRQSKEDRRKLDGLYECILCACCSTSCPSYWWNSEEYLGPAVLLQSYRWIADSRDEKTAQRKDALNNSMSLYRCHTILNCSRTCPKGLNPALAIAEIKKSMAFA 299

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BLAST of mRNA_P-canaliculata_contig9759.23854.1 vs. uniprot
Match: A0A0D2GPU7_9EURO (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=10 Tax=Herpotrichiellaceae TaxID=43219 RepID=A0A0D2GPU7_9EURO)

HSP 1 Score: 440 bits (1131), Expect = 3.020e-154
Identity = 202/233 (86.70%), Postives = 220/233 (94.42%), Query Frame = 1

Query:   76 KTFHVYRWDPDTPAQKPRMQAYTLDLDKTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTKQESRVYPLPHTYVVKDLVPDLTQFYRQYKSIKPYLQRDEAPPEGREYRQSRADRQKLDGLYECILCACCSTSCPSYWWNADQYLGPAVLMQSYRWMADSRDQHGAERRAALDNSMSLYRCHTILNCSRTCPKGLNPARAIAEIKKSLAFA 774
            KTFH+YRW+PD P  KPRMQ YTLDL+KTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDT +ESR+YPLPHTYVVKDLVPDLTQFY+QYKSIKP+LQRD   P+G+E RQS ADR+KLDGLYECILCACCSTSCPSYWWN+DQYLGPA+L+QSYRW+ADSRD+  AER+ ALDNSMSLYRCHTILNCSRTCPKGLNPA+AIAEIKKSL+FA
Sbjct:   65 KTFHIYRWNPDEPTSKPRMQTYTLDLNKTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTAKESRIYPLPHTYVVKDLVPDLTQFYKQYKSIKPFLQRDTKSPDGKENRQSPADRKKLDGLYECILCACCSTSCPSYWWNSDQYLGPAILLQSYRWLADSRDERKAERKEALDNSMSLYRCHTILNCSRTCPKGLNPAKAIAEIKKSLSFA 297

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BLAST of mRNA_P-canaliculata_contig9759.23854.1 vs. uniprot
Match: A0A6A5XQZ8_9PLEO (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Aaosphaeria arxii CBS 175.79 TaxID=1450172 RepID=A0A6A5XQZ8_9PLEO)

HSP 1 Score: 438 bits (1127), Expect = 7.710e-154
Identity = 204/258 (79.07%), Postives = 233/258 (90.31%), Query Frame = 1

Query:    1 RPMATTTTDSATRSTP-AAPSPAPRQKTFHVYRWDPDTPAQKPRMQAYTLDLDKTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTKQESRVYPLPHTYVVKDLVPDLTQFYRQYKSIKPYLQRDEAPPEGREYRQSRADRQKLDGLYECILCACCSTSCPSYWWNADQYLGPAVLMQSYRWMADSRDQHGAERRAALDNSMSLYRCHTILNCSRTCPKGLNPARAIAEIKKSLAF 771
            R +A+  ++S T +TP  APS  P+ KTFH+YRW+PD P+ KPRMQ+YTLDL+KTGPMMLDALIRIKNE DPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDT +ESR+YPLPH YVVKDLVPD+TQFY+QY+S+KPYLQRD   P+GREYRQS+ADR+KLDGLYECILCACCSTSCPSYWWN ++YLGPAVL+QSYRW+ADSRD+   ER  AL+NSMS+YRCHTILNCSRTCPKGLNPA AIAEIKK++AF
Sbjct:   26 RGLASVVSESKTSTTPDPAPSKEPKTKTFHIYRWNPDEPSSKPRMQSYTLDLNKTGPMMLDALIRIKNETDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTTKESRIYPLPHMYVVKDLVPDMTQFYKQYRSVKPYLQRDTPAPDGREYRQSKADRKKLDGLYECILCACCSTSCPSYWWNQEEYLGPAVLLQSYRWIADSRDERKPERLDALNNSMSVYRCHTILNCSRTCPKGLNPALAIAEIKKNMAF 283

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BLAST of mRNA_P-canaliculata_contig9759.23854.1 vs. uniprot
Match: H6BLL0_EXODN (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=9 Tax=Herpotrichiellaceae TaxID=43219 RepID=H6BLL0_EXODN)

HSP 1 Score: 439 bits (1128), Expect = 8.650e-154
Identity = 201/235 (85.53%), Postives = 221/235 (94.04%), Query Frame = 1

Query:   70 RQKTFHVYRWDPDTPAQKPRMQAYTLDLDKTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTKQESRVYPLPHTYVVKDLVPDLTQFYRQYKSIKPYLQRDEAPPEGREYRQSRADRQKLDGLYECILCACCSTSCPSYWWNADQYLGPAVLMQSYRWMADSRDQHGAERRAALDNSMSLYRCHTILNCSRTCPKGLNPARAIAEIKKSLAFA 774
            R KTFH+YRW+PD P  KPRMQ YTLDL+KTGPM+LDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDT +ESR+YPLPHTYVVKDLVPDLT FY+QYKSIKP+LQRD   P+G+E+RQS ADR+KLDGLYECILCACCSTSCPSYWWN+DQYLGPA+L+QSYRW+ADSRD+  AER+ ALDNSMSLYRCHTILNCSRTCPKGLNPA+AIAEIKKSL+FA
Sbjct:   63 RIKTFHIYRWNPDEPTSKPRMQTYTLDLNKTGPMVLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTGKESRIYPLPHTYVVKDLVPDLTHFYKQYKSIKPFLQRDTKSPDGKEFRQSPADRKKLDGLYECILCACCSTSCPSYWWNSDQYLGPAILLQSYRWLADSRDERKAERKEALDNSMSLYRCHTILNCSRTCPKGLNPAKAIAEIKKSLSFA 297

[Close]

BLAST of mRNA_P-canaliculata_contig9759.23854.1 vs. uniprot
Match: E9CYH0_COCPS (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=7 Tax=Coccidioides TaxID=5500 RepID=E9CYH0_COCPS)

HSP 1 Score: 437 bits (1123), Expect = 2.810e-153
Identity = 203/258 (78.68%), Postives = 230/258 (89.15%), Query Frame = 1

Query:    1 RPMATTTTDSATRSTPAAPSPAPRQKTFHVYRWDPDTPAQKPRMQAYTLDLDKTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTKQESRVYPLPHTYVVKDLVPDLTQFYRQYKSIKPYLQRDEAPPEGREYRQSRADRQKLDGLYECILCACCSTSCPSYWWNADQYLGPAVLMQSYRWMADSRDQHGAERRAALDNSMSLYRCHTILNCSRTCPKGLNPARAIAEIKKSLAFA 774
            R  AT  + S   S PA+ SP  + KTFH+YRWDPD P++KPRMQ YT+DL+KTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIP DT +ESR+YPLPHTYVVKDLVPD+T FY+QYKSIKPYLQR+   P+G+E RQS ADR+KLDGLYECILCACCSTSCPSYWWN+++YLGPA+L+QSYRW+ DSRD+  AERRAALDNSMS+YRCHTI+NC+RTCPKGLNP +AIAEIKK LAFA
Sbjct:   25 RTYATVESKSPETSNPAS-SPEAKNKTFHIYRWDPDRPSEKPRMQTYTIDLNKTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPADTAKESRIYPLPHTYVVKDLVPDMTHFYKQYKSIKPYLQRETKSPDGKEIRQSPADRKKLDGLYECILCACCSTSCPSYWWNSEEYLGPAILLQSYRWLVDSRDEKTAERRAALDNSMSVYRCHTIMNCTRTCPKGLNPGKAIAEIKKQLAFA 281

[Close]

BLAST of mRNA_P-canaliculata_contig9759.23854.1 vs. uniprot
Match: A0A150V0F8_9PEZI (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Acidomyces richmondensis BFW TaxID=766039 RepID=A0A150V0F8_9PEZI)

HSP 1 Score: 436 bits (1122), Expect = 2.890e-153
Identity = 208/271 (76.75%), Postives = 233/271 (85.98%), Query Frame = 1

Query:    7 MATTTTDSATRSTPAAPSPAPRQ---------------KTFHVYRWDPDTPAQKPRMQAYTLDLDKTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTKQESRVYPLPHTYVVKDLVPDLTQFYRQYKSIKPYLQRDEAPPEGREYRQSRADRQKLDGLYECILCACCSTSCPSYWWNADQYLGPAVLMQSYRWMADSRDQHGAERRAALDNSMSLYRCHTILNCSRTCPKGLNPARAIAEIKKSLAFA 774
            MATT    +  S+P+ P  +PRQ               KTFH+YRW+PD P  KPRMQ+YTLDL+KTGPMMLDALIRIKNE+DPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDT +ESR+YPLPHTYVVKDLVPDLTQFY+QYKSIKPYLQRD   P+GRE RQS+A+R+KLDGLYECILCACCSTSCPSYWWN+++YLGPAVLMQSYRW+ADSRD+   +R+  L+NSMSLYRCHTILNCSRTCPKGLNPA AIAEIKKSLAF+
Sbjct:    1 MATTVEPPSPASSPSRPPLSPRQTSTVNEPKMDADAKIKTFHIYRWNPDEPTSKPRMQSYTLDLNKTGPMMLDALIRIKNEIDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTTKESRIYPLPHTYVVKDLVPDLTQFYKQYKSIKPYLQRDTPSPDGRENRQSKAERRKLDGLYECILCACCSTSCPSYWWNSEEYLGPAVLMQSYRWIADSRDERTEQRKEELNNSMSLYRCHTILNCSRTCPKGLNPALAIAEIKKSLAFS 271

[Close]

BLAST of mRNA_P-canaliculata_contig9759.23854.1 vs. uniprot
Match: A0A0D2A4H2_9PEZI (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Verruconis gallopava TaxID=253628 RepID=A0A0D2A4H2_9PEZI)

HSP 1 Score: 436 bits (1121), Expect = 4.920e-153
Identity = 203/251 (80.88%), Postives = 230/251 (91.63%), Query Frame = 1

Query:   22 TDSATRSTPAAPSPAPRQKTFHVYRWDPDTPAQKPRMQAYTLDLDKTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTKQESRVYPLPHTYVVKDLVPDLTQFYRQYKSIKPYLQRDEAPPEGREYRQSRADRQKLDGLYECILCACCSTSCPSYWWNADQYLGPAVLMQSYRWMADSRDQHGAERRAALDNSMSLYRCHTILNCSRTCPKGLNPARAIAEIKKSLAFA 774
            T+++T   PA PS   + KTF VYRW+PDTP +KPRMQ YTLDL+KTGPMMLDALIRIKNE+DPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDT +ESR+YPLPHTYVVKDLVPD+TQFY+QY+SIKPYLQRD  PP+GRE RQS A+R+KLDGLYECILCACCSTSCPSYWWN+++YLGPA+L+QSYRW+ADSRD+   +R+AALDNSMSLYRCHTILNCSR CPKGLNPA AIAEIKKS++FA
Sbjct:   28 TEASTTQEPA-PSKDAKMKTFKVYRWNPDTPNEKPRMQTYTLDLNKTGPMMLDALIRIKNELDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTTKESRIYPLPHTYVVKDLVPDMTQFYKQYRSIKPYLQRDTPPPDGRENRQSIAERKKLDGLYECILCACCSTSCPSYWWNSEEYLGPAILLQSYRWLADSRDERKEQRKAALDNSMSLYRCHTILNCSRVCPKGLNPALAIAEIKKSMSFA 277

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig9759.23854.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig9759.23854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
W2RQM1_9EURO	7.510e-157	86.13	Succinate dehydrogenase [ubiquinone] iron-sulfur s...	[more]
B6QEH7_TALMQ	5.230e-155	85.00	Succinate dehydrogenase [ubiquinone] iron-sulfur s...	[more]
A0A5N6KNE5_9ROSI	8.670e-155	86.27	Succinate dehydrogenase [ubiquinone] iron-sulfur s...	[more]
A0A6G1KW06_9PEZI	1.130e-154	78.87	Succinate dehydrogenase [ubiquinone] iron-sulfur s...	[more]
A0A0D2GPU7_9EURO	3.020e-154	86.70	Succinate dehydrogenase [ubiquinone] iron-sulfur s...	[more]
A0A6A5XQZ8_9PLEO	7.710e-154	79.07	Succinate dehydrogenase [ubiquinone] iron-sulfur s...	[more]
H6BLL0_EXODN	8.650e-154	85.53	Succinate dehydrogenase [ubiquinone] iron-sulfur s...	[more]
E9CYH0_COCPS	2.810e-153	78.68	Succinate dehydrogenase [ubiquinone] iron-sulfur s...	[more]
A0A150V0F8_9PEZI	2.890e-153	76.75	Succinate dehydrogenase [ubiquinone] iron-sulfur s...	[more]
A0A0D2A4H2_9PEZI	4.920e-153	80.88	Succinate dehydrogenase [ubiquinone] iron-sulfur s...	[more]

Pages

Properties


Property Name	Value
Taxonomic scope	Fungi
Seed ortholog score	447.6
Seed ortholog evalue	4e-123
Seed eggNOG ortholog	293227.XP_008719405.1
Preferred name	SDH2
KEGG rclass	RC00045
KEGG ko	ko:K00235
KEGG Reaction	R02164
KEGG Pathway	ko00020,ko00190,ko01100,ko01110,ko01120,ko01130,ko01200,ko04714,ko04932,ko05010,ko05012,ko05016,map00020,map00190,map01100,map01110,map01120,map01130,map01200,map04714,map04932,map05010,map05012,map05016
KEGG Module	M00009,M00011,M00148
GOs	GO:0000104,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005749,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006105,GO:0006119,GO:0006121,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008177,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016627,GO:0016635,GO:0016999,GO:0017144,GO:0019637,GO:0019693,GO:0019752,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0034641,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045257,GO:0045273,GO:0045281,GO:0045283,GO:0045333,GO:0046034,GO:0046483,GO:0055086,GO:0055114,GO:0070469,GO:0071704,GO:0072350,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
EggNOG free text desc.	Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q)
EggNOG OGs	20CH2@147545,38CDD@33154,3MWBT@451870,3NVAA@4751,3QNWJ@4890,COG0479@1,KOG3049@2759
EC	1.3.5.1
COG Functional cat.	C
Best tax level	Chaetothyriomycetidae
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000
Hectar predicted targeting category	other localisation
Exons	3
Model size	777
Cds size	771
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig9759.23854.1	prot_P-canaliculata_contig9759.23854.1	Pelvetia canaliculata dioecious	polypeptide	P-canaliculata_contig9759 5003..5869 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622817338.9417422-UTR-P-canaliculata_contig9759:4996..5002	1622817338.9417422-UTR-P-canaliculata_contig9759:4996..5002	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig9759 4997..5002 +
1693495232.75774-UTR-P-canaliculata_contig9759:4996..5002	1693495232.75774-UTR-P-canaliculata_contig9759:4996..5002	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig9759 4997..5002 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622817338.9547837-CDS-P-canaliculata_contig9759:5002..5297	1622817338.9547837-CDS-P-canaliculata_contig9759:5002..5297	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig9759 5003..5297 +
1693495232.7705822-CDS-P-canaliculata_contig9759:5002..5297	1693495232.7705822-CDS-P-canaliculata_contig9759:5002..5297	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig9759 5003..5297 +
1622817338.9677014-CDS-P-canaliculata_contig9759:5347..5499	1622817338.9677014-CDS-P-canaliculata_contig9759:5347..5499	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig9759 5348..5499 +
1693495232.7826903-CDS-P-canaliculata_contig9759:5347..5499	1693495232.7826903-CDS-P-canaliculata_contig9759:5347..5499	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig9759 5348..5499 +
1622817338.9806194-CDS-P-canaliculata_contig9759:5545..5869	1622817338.9806194-CDS-P-canaliculata_contig9759:5545..5869	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig9759 5546..5869 +
1693495232.796856-CDS-P-canaliculata_contig9759:5545..5869	1693495232.796856-CDS-P-canaliculata_contig9759:5545..5869	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig9759 5546..5869 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-canaliculata_contig9759:4997..5869+
coding sequence from alignment at P-canaliculata_contig9759:4997..5869+

protein sequence of mRNA_P-canaliculata_contig9759.23854.1

>prot_P-canaliculata_contig9759.23854.1 ID=prot_P-canaliculata_contig9759.23854.1|Name=mRNA_P-canaliculata_contig9759.23854.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=257bp
MATTTTDSATRSTPAAPSPAPRQKTFHVYRWDPDTPAQKPRMQAYTLDLD
KTGPMMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCR
IPTDTKQESRVYPLPHTYVVKDLVPDLTQFYRQYKSIKPYLQRDEAPPEG
REYRQSRADRQKLDGLYECILCACCSTSCPSYWWNADQYLGPAVLMQSYR
WMADSRDQHGAERRAALDNSMSLYRCHTILNCSRTCPKGLNPARAIAEIK
KSLAFA*

mRNA from alignment at P-canaliculata_contig9759:4997..5869+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-canaliculata_contig9759.23854.1 ID=mRNA_P-canaliculata_contig9759.23854.1|Name=mRNA_P-canaliculata_contig9759.23854.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=873bp|location=Sequence derived from alignment at P-canaliculata_contig9759:4997..5869+ (Pelvetia canaliculata dioecious)
CGCCCCATGGCCACCACCACCACGGACTCGGCCACCCGCAGCACCCCCGC
AGCCCCCTCCCCGGCCCCCCGGCAAAAAACCTTCCACGTCTACCGCTGGG
ACCCCGACACGCCGGCGCAGAAGCCGCGCATGCAGGCATACACGCTCGAC
CTCGACAAGACGGGCCCGATGATGCTGGACGCGCTGATCCGCATCAAGAA
CGAGGTGGACCCCACACTGACGTTCCGGCGGAGCTGTCGCGAGGGCATCT
GCGGGAGCTGCGCGATGAACATCGACGGCGTGAACACGCTGGCGTGCTTG
TGTGCGTCTCCCCGCGCAGCGCCAGGCAGGCATGTCGCTGACGCTGCGCA
GGCCGCATCCCCACCGACACCAAGCAGGAGTCGCGCGTGTACCCGCTGCC
GCACACGTACGTGGTCAAGGACCTGGTGCCGGACCTGACGCAGTTCTACC
GGCAGTACAAGTCGATCAAGCCGTACCTGCAGCGCGACGAGGCGCCGCCA
GAGGTACGTCGCCCGCTCCACGCCTCGCACCCCCTCTCACACCCCGCAGG
GCCGCGAGTACCGGCAGTCGCGCGCCGACCGGCAGAAGCTGGACGGGCTG
TACGAGTGCATCCTGTGCGCGTGCTGCAGCACGTCGTGCCCGTCGTACTG
GTGGAACGCCGACCAGTACCTGGGCCCCGCGGTGCTGATGCAGTCGTACC
GCTGGATGGCCGACTCGCGCGACCAGCACGGCGCCGAGCGCCGCGCCGCC
CTCGACAACAGCATGAGCTTGTACCGCTGCCACACGATCCTCAACTGCTC
GCGCACCTGCCCCAAGGGCCTCAACCCGGCGCGCGCTATTGCGGAGATCA
AGAAGAGTCTGGCGTTTGCGTGA

Coding sequence (CDS) from alignment at P-canaliculata_contig9759:4997..5869+

>mRNA_P-canaliculata_contig9759.23854.1 ID=mRNA_P-canaliculata_contig9759.23854.1|Name=mRNA_P-canaliculata_contig9759.23854.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1542bp|location=Sequence derived from alignment at P-canaliculata_contig9759:4997..5869+ (Pelvetia canaliculata dioecious)
ATGGCCACCACCACCACGGACTCGGCCACCCGCAGCACCCCCGCAGCCCC
CTCCCCGGCCCCCCGGCAAAAAACCTTCCACGTCTACCGCTGGGACCCCG
ACACGCCGGCGCAGAAGCCGCGCATGCAGGCATACACGCTCGACCTCGAC
AAGACGGGCCCGATGATGCTGGACGCGCTGATCCGCATCAAGAACGAGGT
GGACCCCACACTGACGTTCCGGCGGAGCTGTCGCGAGGGCATCTGCGGGA
GCTGCGCGATGAACATCGACGGCGTGAACACGCTGGCGTGCTTGTATGGC
CACCACCACCACGGACTCGGCCACCCGCAGCACCCCCGCAGCCCCCTCCC
CGGCCCCCCGGCAAAAAACCTTCCACGTCTACCGCTGGGACCCCGACACG
CCGGCGCAGAAGCCGCGCATGCAGGCATACACGCTCGACCTCGACAAGAC
GGGCCCGATGATGCTGGACGCGCTGATCCGCATCAAGAACGAGGTGGACC
CCACACTGACGTTCCGGCGGAGCTGTCGCGAGGGCATCTGCGGGAGCTGC
GCGATGAACATCGACGGCGTGAACACGCTGGCGTGCTTGTGCCGCATCCC
CACCGACACCAAGCAGGAGTCGCGCGTGTACCCGCTGCCGCACACGTACG
TGGTCAAGGACCTGGTGCCGGACCTGACGCAGTTCTACCGGCAGTACAAG
TCGATCAAGCCGTACCTGCAGCGCGACGAGGCGCCGCCAGAGGCCGCATC
CCCACCGACACCAAGCAGGAGTCGCGCGTGTACCCGCTGCCGCACACGTA
CGTGGTCAAGGACCTGGTGCCGGACCTGACGCAGTTCTACCGGCAGTACA
AGTCGATCAAGCCGTACCTGCAGCGCGACGAGGCGCCGCCAGAGGGCCGC
GAGTACCGGCAGTCGCGCGCCGACCGGCAGAAGCTGGACGGGCTGTACGA
GTGCATCCTGTGCGCGTGCTGCAGCACGTCGTGCCCGTCGTACTGGTGGA
ACGCCGACCAGTACCTGGGCCCCGCGGTGCTGATGCAGTCGTACCGCTGG
ATGGCCGACTCGCGCGACCAGCACGGCGCCGAGCGCCGCGCCGCCCTCGA
CAACAGCATGAGCTTGTACCGCTGCCACACGATCCTCAACTGCTCGCGCA
CCTGCCCCAAGGGCCTCAACCCGGCGCGCGCTATTGCGGAGATCAAGAAG
AGTCTGGCGTTTGCGTGAGGCCGCGAGTACCGGCAGTCGCGCGCCGACCG
GCAGAAGCTGGACGGGCTGTACGAGTGCATCCTGTGCGCGTGCTGCAGCA
CGTCGTGCCCGTCGTACTGGTGGAACGCCGACCAGTACCTGGGCCCCGCG
GTGCTGATGCAGTCGTACCGCTGGATGGCCGACTCGCGCGACCAGCACGG
CGCCGAGCGCCGCGCCGCCCTCGACAACAGCATGAGCTTGTACCGCTGCC
ACACGATCCTCAACTGCTCGCGCACCTGCCCCAAGGGCCTCAACCCGGCG
CGCGCTATTGCGGAGATCAAGAAGAGTCTGGCGTTTGCGTGA