mRNA_P-canaliculata_contig975.23843.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig975.23843.1
Unique NamemRNA_P-canaliculata_contig975.23843.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig975.23843.1 vs. uniprot
Match: A0A150VIG9_9PEZI (Uncharacterized protein n=1 Tax=Acidomyces richmondensis BFW TaxID=766039 RepID=A0A150VIG9_9PEZI)

HSP 1 Score: 187 bits (474), Expect = 2.360e-57
Identity = 89/139 (64.03%), Postives = 107/139 (76.98%), Query Frame = 2
Query:  167 MQATRRLLQHRQPMIRFLGKRFVPKNIDHSPHVHPAAPDDTLPRSFKEYRNRAVQHGPLNGQQQSQRPPKVP------EVQTTQQPYGSIGGRSAQQLGSVEPRDGEFWDRNDLPARFRRGTWTLTEMEAVESGGASLF 565
            MQAT+RLLQHRQPMIRFLGKR  PK +DHSPH HPA+P + LP SF +YRNRA+QHGPL GQQ SQ+    P       + TT  PYG+IGG S ++LGSV+P+ GEFWDRN+LP+RF R  WT  E+EA+ESGGASL+
Sbjct:    1 MQATKRLLQHRQPMIRFLGKRHTPKQVDHSPHAHPASPSNQLPESFAQYRNRAIQHGPLGGQQ-SQQSTSSPVHTGASAMSTTTSPYGAIGGHSGRELGSVQPQKGEFWDRNELPSRFHRARWTEAEIEAIESGGASLY 138          
BLAST of mRNA_P-canaliculata_contig975.23843.1 vs. uniprot
Match: A0A2D3UNA0_9PEZI (Related to mitochondrial ribosomal protein n=1 Tax=Ramularia collo-cygni TaxID=112498 RepID=A0A2D3UNA0_9PEZI)

HSP 1 Score: 167 bits (424), Expect = 7.440e-50
Identity = 81/134 (60.45%), Postives = 100/134 (74.63%), Query Frame = 2
Query:  167 MQATRRLLQHRQPMIRFLGKRFVPKNIDHSPHVHPAAPDDTLPRSFKEYRNRAVQHGPLNGQQQSQRPPKVPEVQTTQQPYGSIGGRSAQQLGSVEPRDGEFWDRNDLPARFRRGTWTLTEMEAVESGGASLFA 568
            MQATRRLL HRQPMIRFLGKR  P+ IDH+P VHP +P   LP SF  YR +A QHGPL G Q+        +V + QQPYG+IGGRSA++LG ++P  GEF DR++LP RF+R  W+L E+EA+ESGGAS+FA
Sbjct:    1 MQATRRLL-HRQPMIRFLGKRSTPQKIDHAPKVHPESPSSALPESFASYREQATQHGPLKGTQRQSSSSAPQQVSSVQQPYGAIGGRSARELGPIKPGKGEFSDRSELPKRFQRTPWSLAEIEAIESGGASMFA 133          
BLAST of mRNA_P-canaliculata_contig975.23843.1 vs. uniprot
Match: A0A3M7GHK0_HORWE (Uncharacterized protein n=3 Tax=Hortaea werneckii TaxID=91943 RepID=A0A3M7GHK0_HORWE)

HSP 1 Score: 167 bits (424), Expect = 2.170e-49
Identity = 84/141 (59.57%), Postives = 96/141 (68.09%), Query Frame = 2
Query:  143 SRIAPPSTMQATRRLLQHRQPMIRFLGKRFVPKNIDHSPHVHPAAPDDTLPRSFKEYRNRAVQHGPLNGQQQSQRPPKVPEVQTTQQPYGSIGGRSAQQLGSVEPRDGEFWDRNDLPARFRRGTWTLTEMEAVESGGASLF 565
            SR  PPS+   TR L QHRQPMIRFLGKR +PK +DH+P  HPA+P   LP SF  YR RA QHGPL G+QQ QR              G+IGGRSAQQLGSVEP  G+ WDRN LP RF R  WT  ++EA+ESGGAS+F
Sbjct:   26 SRRPPPSSSVFTRALWQHRQPMIRFLGKRSIPKQVDHTPAPHPASPTHELPESFASYRTRAQQHGPLGGKQQGQRAAAPSGSAGATPTVGNIGGRSAQQLGSVEPAQGQVWDRNQLPKRFHRARWTEADIEALESGGASMF 166          
BLAST of mRNA_P-canaliculata_contig975.23843.1 vs. uniprot
Match: A0A3M7B7C3_HORWE (Uncharacterized protein n=7 Tax=Hortaea werneckii TaxID=91943 RepID=A0A3M7B7C3_HORWE)

HSP 1 Score: 165 bits (417), Expect = 8.830e-49
Identity = 82/133 (61.65%), Postives = 92/133 (69.17%), Query Frame = 2
Query:  167 MQATRRLLQHRQPMIRFLGKRFVPKNIDHSPHVHPAAPDDTLPRSFKEYRNRAVQHGPLNGQQQSQRPPKVPEVQTTQQPYGSIGGRSAQQLGSVEPRDGEFWDRNDLPARFRRGTWTLTEMEAVESGGASLF 565
            MQ TR L QHRQPMIRFLGKR VPK +DH+P  HPA+P   LP SF  YR RA QHGPL G+QQ QR              G+IGGRSAQQLGSVEP  G+ WDRN LP RF R  WT  ++EA+ESGGAS+F
Sbjct:    1 MQFTRALWQHRQPMIRFLGKRSVPKQVDHTPAPHPASPTHELPESFASYRTRAQQHGPLGGKQQGQRAAAPSGSAGATPTVGNIGGRSAQQLGSVEPAQGQVWDRNQLPKRFHRARWTEADIEALESGGASMF 133          
BLAST of mRNA_P-canaliculata_contig975.23843.1 vs. uniprot
Match: A0A2G5HML5_CERBT (Uncharacterized protein n=5 Tax=Cercospora TaxID=29002 RepID=A0A2G5HML5_CERBT)

HSP 1 Score: 162 bits (410), Expect = 1.010e-47
Identity = 77/133 (57.89%), Postives = 92/133 (69.17%), Query Frame = 2
Query:  167 MQATRRLLQHRQPMIRFLGKRFVPKNIDHSPHVHPAAPDDTLPRSFKEYRNRAVQHGPLNGQQQSQRPPKVPEVQTTQQPYGSIGGRSAQQLGSVEPRDGEFWDRNDLPARFRRGTWTLTEMEAVESGGASLF 565
            MQATRRL QHRQPMIRFLGKR  PK +DH+P  HP +P   LP SF  YR +A+QHGPL G QQ    P          PYG+IGGRSA++LG ++   GEF DRNDLP RF R  W+  E++A+ESGGAS+F
Sbjct:    1 MQATRRLFQHRQPMIRFLGKRSNPKQVDHTPKPHPESPSHDLPSSFANYRQQAIQHGPLKGGQQKPNAPSSGSAAAPLNPYGAIGGRSAKELGPIKVAQGEFADRNDLPKRFHRTAWSQAEIDAIESGGASMF 133          
BLAST of mRNA_P-canaliculata_contig975.23843.1 vs. uniprot
Match: A0A6A6WCU3_9PEZI (Uncharacterized protein n=1 Tax=Pseudovirgaria hyperparasitica TaxID=470096 RepID=A0A6A6WCU3_9PEZI)

HSP 1 Score: 161 bits (407), Expect = 2.040e-47
Identity = 81/134 (60.45%), Postives = 96/134 (71.64%), Query Frame = 2
Query:  167 MQATRRLLQHRQPMIRFLGKRFVPKNIDHSPHVHPAAPDDTLPRSFKEYRNRAVQHGPLNGQQQSQRPPKVPEVQTTQQPYGS-IGGRSAQQLGSVEPRDGEFWDRNDLPARFRRGTWTLTEMEAVESGGASLF 565
            M ATR LLQHRQPMIRFLGKR +P  +DHSPHVHPA+P  +LP SF EYR +A QHGPL GQQQS           +   YG  IG RS   LGSV P +G+++DRNDLPARF+R  W+  E++A+ESGGASLF
Sbjct:    1 MHATRALLQHRQPMIRFLGKRNIPAKLDHSPHVHPASPSPSLPSSFAEYRQKAQQHGPLGGQQQS-----------SSISYGGYIGSRSGSSLGSVTPSEGQYFDRNDLPARFKRLAWSQAEIDAIESGGASLF 123          
BLAST of mRNA_P-canaliculata_contig975.23843.1 vs. uniprot
Match: M3B3Q5_PSEFD (Uncharacterized protein n=3 Tax=Pseudocercospora TaxID=131324 RepID=M3B3Q5_PSEFD)

HSP 1 Score: 161 bits (408), Expect = 2.100e-47
Identity = 79/134 (58.96%), Postives = 97/134 (72.39%), Query Frame = 2
Query:  167 MQATRRLLQHRQPMIRFLGKRFVPKNIDHSPHVHPAAPDDTLPRSFKEYRNRAVQHGPLNGQQQSQRPPKV-PEVQTTQQPYGSIGGRSAQQLGSVEPRDGEFWDRNDLPARFRRGTWTLTEMEAVESGGASLF 565
            MQATR L QHRQPMIRFLGKR +PK +DHSP  HP +P   LP+SF +YR +A+QHGPL G Q  Q  P           PYGSIGG+SA++LG ++P  GEF DRN+LPARFRR  W++ E+EA+ESGGAS+ 
Sbjct:    1 MQATRMLWQHRQPMIRFLGKRQLPKQVDHSPKPHPESPSHDLPQSFAKYREQAIQHGPLKGGQPRQAAPSGGASGPAPMNPYGSIGGKSAKELGPIKPGKGEFADRNELPARFRRVPWSMAEIEAIESGGASML 134          
BLAST of mRNA_P-canaliculata_contig975.23843.1 vs. uniprot
Match: M2LS68_BAUPA (Uncharacterized protein n=1 Tax=Baudoinia panamericana (strain UAMH 10762) TaxID=717646 RepID=M2LS68_BAUPA)

HSP 1 Score: 160 bits (404), Expect = 5.460e-47
Identity = 77/133 (57.89%), Postives = 90/133 (67.67%), Query Frame = 2
Query:  167 MQATRRLLQHRQPMIRFLGKRFVPKNIDHSPHVHPAAPDDTLPRSFKEYRNRAVQHGPLNGQQQSQRPPKVPEVQTTQQPYGSIGGRSAQQLGSVEPRDGEFWDRNDLPARFRRGTWTLTEMEAVESGGASLF 565
            M+ TR LLQ RQP+I+FLGKR  PK +DH+PH HPA+P   LP SF  YR RA QHGPL   Q             T QPYG+IGGR  + LG VEP+ GE+WDRN+LP RF R  WT  EMEA+ESGGAS+F
Sbjct:    1 MRLTRVLLQKRQPLIKFLGKRHTPKQVDHTPHAHPASPTHELPESFASYRTRAQQHGPLGAAQ-------------TAQPYGAIGGRPGRALGPVEPKKGEYWDRNELPKRFHRTRWTAAEMEALESGGASMF 120          
BLAST of mRNA_P-canaliculata_contig975.23843.1 vs. uniprot
Match: A0A6G1LFN1_9PEZI (Uncharacterized protein n=1 Tax=Teratosphaeria nubilosa TaxID=161662 RepID=A0A6G1LFN1_9PEZI)

HSP 1 Score: 160 bits (405), Expect = 7.210e-47
Identity = 81/141 (57.45%), Postives = 95/141 (67.38%), Query Frame = 2
Query:  167 MQATRRLLQHRQPMIRFLGKRFVPKNIDHSPHVHPAAPDDTLPRSFKEYRNRAVQHGPLNGQQQSQR-------PPKVPEVQTTQQPYGSIGGRSAQQLGSVEPRDGEFWDRNDLPARFRRGTWTLTEMEAVESGGASLFA 568
            MQATR LLQHR PMIRFLGKR VPK IDH+P  HPAAP D LP SF  YR+RA QHGPLN    + R       PP       T  PYG+IGG SA++LG +    GE WDRN+LP RF R  W+  ++EA+ESGGAS++A
Sbjct:    1 MQATRALLQHRTPMIRFLGKRSVPKQIDHTPKPHPAAPSDYLPESFALYRDRATQHGPLNPSSTAPRTQSTASSPPSGSAAAQTSNPYGAIGGHSARELGQIRLGKGEVWDRNELPKRFHRIRWSEADIEALESGGASMYA 141          
BLAST of mRNA_P-canaliculata_contig975.23843.1 vs. uniprot
Match: A0A6A6HAG9_9PEZI (Uncharacterized protein n=1 Tax=Viridothelium virens TaxID=1048519 RepID=A0A6A6HAG9_9PEZI)

HSP 1 Score: 157 bits (398), Expect = 4.290e-46
Identity = 79/134 (58.96%), Postives = 92/134 (68.66%), Query Frame = 2
Query:  167 MQATRRLLQHRQPMIRFLGKRFVPKNIDHSPHVHPAAPDDTLPRSFKEYRNRAVQHGPLNGQQQSQRPPKVPEVQTTQQPYGSIGGRSAQQLGSVEPRDGEFWDRNDLPARFRRGTWTLTEMEAVESGGASLFA 568
            MQATRRLLQHRQPMI+FLGKR  P N+DHSPH HPA+P  +LP SF  YR +A QHGPL               Q+T    G+IGG S   LGS+ P  GE +DR+DLPARFRR  WT  E+EA+ESGGAS+FA
Sbjct:    1 MQATRRLLQHRQPMIKFLGKRTPPANVDHSPHAHPASPTHSLPDSFATYRQKAQQHGPL--------------TQSTNFHSGAIGGHSGHSLGSIRPGKGEVFDRSDLPARFRRTPWTQAEIEAIESGGASMFA 120          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig975.23843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A150VIG9_9PEZI2.360e-5764.03Uncharacterized protein n=1 Tax=Acidomyces richmon... [more]
A0A2D3UNA0_9PEZI7.440e-5060.45Related to mitochondrial ribosomal protein n=1 Tax... [more]
A0A3M7GHK0_HORWE2.170e-4959.57Uncharacterized protein n=3 Tax=Hortaea werneckii ... [more]
A0A3M7B7C3_HORWE8.830e-4961.65Uncharacterized protein n=7 Tax=Hortaea werneckii ... [more]
A0A2G5HML5_CERBT1.010e-4757.89Uncharacterized protein n=5 Tax=Cercospora TaxID=2... [more]
A0A6A6WCU3_9PEZI2.040e-4760.45Uncharacterized protein n=1 Tax=Pseudovirgaria hyp... [more]
M3B3Q5_PSEFD2.100e-4758.96Uncharacterized protein n=3 Tax=Pseudocercospora T... [more]
M2LS68_BAUPA5.460e-4757.89Uncharacterized protein n=1 Tax=Baudoinia panameri... [more]
A0A6G1LFN1_9PEZI7.210e-4757.45Uncharacterized protein n=1 Tax=Teratosphaeria nub... [more]
A0A6A6HAG9_9PEZI4.290e-4658.96Uncharacterized protein n=1 Tax=Viridothelium vire... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig975contigP-canaliculata_contig975:26203..26913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score161.8
Seed ortholog evalue2.3e-37
Seed eggNOG ortholog83344.XP_007924626.1
KEGG koko:K17417
EggNOG free text desc.Pfam:DUF2638
EggNOG OGs2056N@147541,38WP8@33154,3MM2K@451867,3Q0QK@4751,3R7G2@4890,KOG3178@1,KOG3178@2759
COG Functional cat.S
Best tax levelDothideomycetidae
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko03011
Hectar predicted targeting categoryother localisation
Exons2
Model size657
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig975.23843.1prot_P-canaliculata_contig975.23843.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig975 26289..26747 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817338.4025488-UTR-P-canaliculata_contig975:26202..262881622817338.4025488-UTR-P-canaliculata_contig975:26202..26288Pelvetia canaliculata dioeciousUTRP-canaliculata_contig975 26203..26288 -
1693495232.4512815-UTR-P-canaliculata_contig975:26202..262881693495232.4512815-UTR-P-canaliculata_contig975:26202..26288Pelvetia canaliculata dioeciousUTRP-canaliculata_contig975 26203..26288 -
1622817338.4380562-UTR-P-canaliculata_contig975:26747..269131622817338.4380562-UTR-P-canaliculata_contig975:26747..26913Pelvetia canaliculata dioeciousUTRP-canaliculata_contig975 26748..26913 -
1693495232.48502-UTR-P-canaliculata_contig975:26747..269131693495232.48502-UTR-P-canaliculata_contig975:26747..26913Pelvetia canaliculata dioeciousUTRP-canaliculata_contig975 26748..26913 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817338.414236-CDS-P-canaliculata_contig975:26288..266171622817338.414236-CDS-P-canaliculata_contig975:26288..26617Pelvetia canaliculata dioeciousCDSP-canaliculata_contig975 26289..26617 -
1693495232.4661467-CDS-P-canaliculata_contig975:26288..266171693495232.4661467-CDS-P-canaliculata_contig975:26288..26617Pelvetia canaliculata dioeciousCDSP-canaliculata_contig975 26289..26617 -
1622817338.4276257-CDS-P-canaliculata_contig975:26671..267471622817338.4276257-CDS-P-canaliculata_contig975:26671..26747Pelvetia canaliculata dioeciousCDSP-canaliculata_contig975 26672..26747 -
1693495232.475472-CDS-P-canaliculata_contig975:26671..267471693495232.475472-CDS-P-canaliculata_contig975:26671..26747Pelvetia canaliculata dioeciousCDSP-canaliculata_contig975 26672..26747 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig975.23843.1

>prot_P-canaliculata_contig975.23843.1 ID=prot_P-canaliculata_contig975.23843.1|Name=mRNA_P-canaliculata_contig975.23843.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=135bp
MQATRRLLQHRQPMIRFLGKRFVPKNIDHSPHVHPAAPDDTLPRSFKEYR
NRAVQHGPLNGQQQSQRPPKVPEVQTTQQPYGSIGGRSAQQLGSVEPRDG
EFWDRNDLPARFRRGTWTLTEMEAVESGGASLFA*
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mRNA from alignment at P-canaliculata_contig975:26203..26913-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig975.23843.1 ID=mRNA_P-canaliculata_contig975.23843.1|Name=mRNA_P-canaliculata_contig975.23843.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=711bp|location=Sequence derived from alignment at P-canaliculata_contig975:26203..26913- (Pelvetia canaliculata dioecious)
CGACAGCATTATTCTTCGTCAAAGACTCTCCAAACCCTCGTCGCTCTGAA GAATCCTGTCATGTCCACGAGAAGCCGGTGACGCTCGAGCTGTCTCGCTC ACATTTCGAGTCCCTATCCCGACCAAGAATCTCTCCATTGTGTCGCGCAT CGCCCCGCCGTCCACCATGCAGGCGACACGCCGGCTGTTGCAGCACCGAC AGCCCATGATCCGCTTTCTCGGCAAGCGATTCGTCCCGAAGAGTTCGTAC TGCGAAGACTTTCCTCGAGTCCCCGGCCCCACTGACGTTGCCCCAGACAT CGACCACAGCCCCCACGTCCACCCGGCCGCGCCCGACGACACCCTTCCGC GGTCCTTCAAAGAATACCGCAATCGAGCAGTCCAGCACGGCCCGCTCAAC GGTCAACAACAGTCGCAGCGGCCCCCAAAGGTCCCGGAGGTGCAGACGAC ACAGCAGCCGTATGGCAGCATCGGGGGCCGCTCAGCTCAGCAGTTGGGAT CGGTGGAGCCGCGCGACGGGGAGTTTTGGGACCGAAACGATTTGCCGGCA CGCTTCCGGAGAGGAACTTGGACACTGACAGAGATGGAGGCGGTAGAGAG TGGGGGCGCCAGTCTATTTGCTTGAGACAGTGTGACCGGCTGTTTCTCAG ACCTGCCTACCAAGAGGCTCGACTCGCAGCACTTCTCGGTGAGCATGATT CACAATCACAT
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Coding sequence (CDS) from alignment at P-canaliculata_contig975:26203..26913-

>mRNA_P-canaliculata_contig975.23843.1 ID=mRNA_P-canaliculata_contig975.23843.1|Name=mRNA_P-canaliculata_contig975.23843.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at P-canaliculata_contig975:26203..26913- (Pelvetia canaliculata dioecious)
ATGCAGGCGACACGCCGGCTGTTGCAGCACCGACAGCCCATGATCCGCTT
TCTCGGCAAGCGATTCGTCCCGAAGAATGCAGGCGACACGCCGGCTGTTG
CAGCACCGACAGCCCATGATCCGCTTTCTCGGCAAGCGATTCGTCCCGAA
GAACATCGACCACAGCCCCCACGTCCACCCGGCCGCGCCCGACGACACCC
TTCCGCGGTCCTTCAAAGAATACCGCAATCGAGCAGTCCAGCACGGCCCG
CTCAACGGTCAACAACAGTCGCAGCGGCCCCCAAAGGTCCCGGAGGTGCA
GACGACACAGCAGCCGTATGGCAGCATCGGGGGCCGCTCAGCTCAGCAGT
TGGGATCGGTGGAGCCGCGCGACGGGGAGTTTTGGGACCGAAACGATTTG
CCGGCACGCTTCCGGAGAGGAACTTGGACACTGACAGAGATGGAGGCGGT
AGAGAGTGGGGGCGCCAGTCTATTTGCTTGAACATCGACCACAGCCCCCA
CGTCCACCCGGCCGCGCCCGACGACACCCTTCCGCGGTCCTTCAAAGAAT
ACCGCAATCGAGCAGTCCAGCACGGCCCGCTCAACGGTCAACAACAGTCG
CAGCGGCCCCCAAAGGTCCCGGAGGTGCAGACGACACAGCAGCCGTATGG
CAGCATCGGGGGCCGCTCAGCTCAGCAGTTGGGATCGGTGGAGCCGCGCG
ACGGGGAGTTTTGGGACCGAAACGATTTGCCGGCACGCTTCCGGAGAGGA
ACTTGGACACTGACAGAGATGGAGGCGGTAGAGAGTGGGGGCGCCAGTCT
ATTTGCTTGA
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